Wall clock time and date at job start Tue Mar 31 2020 11:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46505 * 110.88811 * 2 1 4 4 C 1.34773 * 120.00095 * 62.43067 * 3 2 1 5 5 O 1.21663 * 119.99849 * 359.97438 * 4 3 2 6 6 C 1.46974 * 120.00178 * 179.72568 * 4 3 2 7 7 C 1.35806 * 125.13136 * 180.27249 * 6 4 3 8 8 C 1.46247 * 106.08099 * 179.97438 * 7 6 4 9 9 C 1.39700 * 134.19728 * 179.97438 * 8 7 6 10 10 C 1.36613 * 119.71389 * 180.02562 * 9 8 7 11 11 C 1.38837 * 120.44613 * 359.95885 * 10 9 8 12 12 C 1.37790 * 120.74234 * 0.03847 * 11 10 9 13 13 C 1.39030 * 119.85545 * 359.97438 * 12 11 10 14 14 O 1.34714 * 133.24085 * 180.31623 * 13 12 11 15 15 C 1.55158 * 111.03652 * 236.09603 * 2 1 3 16 16 C 1.54324 * 102.94499 * 206.41051 * 15 2 1 17 17 N 1.47019 * 107.26926 * 22.19073 * 16 15 2 18 18 C 1.36938 * 125.64758 * 181.02266 * 17 16 15 19 19 H 1.07998 * 119.99968 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00424 * 0.04697 * 18 17 16 21 21 N 1.31626 * 119.99313 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00669 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 89.99560 * 22 20 18 24 24 H 1.48496 * 109.47394 * 209.99964 * 22 20 18 25 25 H 1.48507 * 109.47037 * 329.99919 * 22 20 18 26 26 C 1.47418 * 108.70592 * 1.06250 * 17 16 15 27 27 H 1.09005 * 109.47369 * 60.69430 * 1 2 3 28 28 H 1.08997 * 109.47513 * 180.70137 * 1 2 3 29 29 H 1.09006 * 109.47134 * 300.70238 * 1 2 3 30 30 H 0.97000 * 119.99792 * 242.42632 * 3 2 1 31 31 H 1.08004 * 126.95907 * 359.97438 * 7 6 4 32 32 H 1.08003 * 120.14122 * 359.97438 * 9 8 7 33 33 H 1.08010 * 119.78069 * 179.97438 * 10 9 8 34 34 H 1.08002 * 119.62925 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.07544 * 180.02562 * 12 11 10 36 36 H 1.09000 * 110.71782 * 324.77214 * 15 2 1 37 37 H 1.09001 * 110.72149 * 88.04833 * 15 2 1 38 38 H 1.08999 * 109.88386 * 262.77913 * 16 15 2 39 39 H 1.08994 * 109.88349 * 141.60919 * 16 15 2 40 40 H 0.97003 * 119.99449 * 180.02562 * 21 20 18 41 41 H 1.08998 * 110.37048 * 217.03499 * 26 17 16 42 42 H 1.09002 * 110.46494 * 94.75566 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0522 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1150 1.7966 1.9684 6 6 2.3169 3.5622 1.0375 7 6 2.1201 4.4737 2.0247 8 6 2.8237 5.6848 1.6040 9 6 3.0019 6.9520 2.1645 10 6 3.7369 7.8904 1.4970 11 6 4.3078 7.5925 0.2670 12 6 4.1439 6.3487 -0.3029 13 6 3.3999 5.3774 0.3574 14 8 3.0774 4.1031 0.0627 15 6 2.0869 -0.8078 -1.2019 16 6 3.4682 -1.2733 -0.6953 17 7 3.4274 -1.2420 0.7740 18 6 4.4642 -1.5651 1.6083 19 1 4.3331 -1.5102 2.6788 20 6 5.6838 -1.9627 1.0780 21 7 5.8435 -2.0297 -0.2269 22 14 7.0983 -2.4027 2.2158 23 1 7.0455 -3.8523 2.5336 24 1 8.3869 -2.0890 1.5479 25 1 6.9870 -1.6165 3.4708 26 6 2.0853 -0.8063 1.2006 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3634 0.5247 0.8837 30 1 2.5885 1.6832 -0.7446 31 1 1.5578 4.3328 2.9361 32 1 2.5599 7.1890 3.1210 33 1 3.8751 8.8706 1.9291 34 1 4.8867 8.3442 -0.2491 35 1 4.5932 6.1285 -1.2600 36 1 1.4480 -1.6634 -1.4207 37 1 2.1929 -0.1699 -2.0794 38 1 4.2432 -0.5986 -1.0589 39 1 3.6664 -2.2884 -1.0391 40 1 6.6957 -2.3080 -0.5975 41 1 2.1553 -0.1715 2.0838 42 1 1.4511 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046819670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:30 Heat of formation + Delta-G solvation = 5.598227 kcal Electronic energy + Delta-G solvation = -26018.471812 eV Core-core repulsion = 22350.991895 eV Total energy + Delta-G solvation = -3667.479917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -43.57023 -41.25243 -39.05172 -38.71336 -35.79968 -33.87342 -33.79324 -31.96351 -31.37229 -30.62023 -30.15890 -27.55035 -25.89923 -25.11102 -23.72252 -22.80391 -22.28971 -21.73352 -20.63345 -19.50260 -18.74940 -18.46265 -17.50666 -17.28454 -16.93176 -16.66599 -16.16530 -15.98421 -15.56250 -15.35941 -15.09191 -14.88828 -14.32908 -14.19720 -14.05703 -13.88632 -13.59135 -13.46444 -13.27379 -13.14791 -12.87712 -12.84766 -12.79211 -12.21342 -12.08492 -12.04327 -11.94826 -11.75060 -11.65478 -11.30347 -11.08267 -10.73387 -10.18982 -9.68915 -9.31390 -8.89216 -7.88268 -5.22178 -0.49483 0.33318 0.78492 1.37104 1.41249 1.42998 1.51607 1.97778 2.11613 2.46009 2.70889 3.28692 3.31660 3.53547 3.58748 3.68605 3.90578 3.99939 4.00300 4.14192 4.15379 4.30516 4.46245 4.55620 4.60312 4.65731 4.70970 4.80128 4.84499 4.90425 5.00446 5.03579 5.07912 5.25263 5.31223 5.35831 5.40026 5.45855 5.48535 5.58801 5.64747 5.73436 6.00048 6.17490 6.40396 6.95868 7.09094 7.74801 8.38798 9.21663 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.004046 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.498483 B = 6918.596628 C = 8103.070423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.162 3.838 3 N -0.686 5.686 4 C 0.599 3.401 5 O -0.541 6.541 6 C -0.045 4.045 7 C -0.114 4.114 8 C -0.165 4.165 9 C -0.067 4.067 10 C -0.134 4.134 11 C -0.072 4.072 12 C -0.127 4.127 13 C 0.041 3.959 14 O -0.198 6.198 15 C -0.128 4.128 16 C 0.184 3.816 17 N -0.622 5.622 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.059 4.059 21 N -0.946 5.946 22 Si 0.974 3.026 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.127 3.873 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.409 0.591 31 H 0.179 0.821 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.013 0.987 39 H 0.012 0.988 40 H 0.247 0.753 41 H 0.033 0.967 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 20.339 -2.161 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 N -0.334 5.334 4 C 0.385 3.615 5 O -0.421 6.421 6 C -0.094 4.094 7 C -0.135 4.135 8 C -0.166 4.166 9 C -0.085 4.085 10 C -0.152 4.152 11 C -0.090 4.090 12 C -0.145 4.145 13 C -0.007 4.007 14 O -0.100 6.100 15 C -0.166 4.166 16 C 0.059 3.941 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.802 3.198 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.001 3.999 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.196 0.804 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.165 0.835 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.276 19.799 -1.782 21.534 hybrid contribution 1.320 -0.702 0.362 1.538 sum -6.956 19.097 -1.420 20.375 Atomic orbital electron populations 1.21936 0.91160 1.03684 1.03058 1.21553 0.94619 0.79851 0.96406 1.45761 1.53089 1.12489 1.22100 1.16787 0.79857 0.82140 0.82729 1.90802 1.40712 1.74842 1.35762 1.21956 1.00964 0.95238 0.91267 1.22976 1.00291 0.90689 0.99529 1.20178 1.03443 0.96585 0.96391 1.20755 0.97537 0.89646 1.00579 1.21289 0.97688 1.00846 0.95356 1.21526 0.97360 0.94833 0.95280 1.20426 1.00596 0.91452 1.02033 1.20376 1.00480 0.83445 0.96376 1.83986 1.58083 1.24922 1.43021 1.23121 0.96926 1.00108 0.96434 1.20948 0.92864 0.97485 0.82758 1.44692 1.08606 1.78897 1.02619 1.19342 0.90750 1.37865 0.89354 0.91248 1.25539 0.99952 1.02233 0.97533 1.70156 1.24288 1.54480 1.10516 0.85149 0.78706 0.78023 0.77895 1.20930 1.21608 1.20173 1.22024 0.86373 0.95301 0.96216 0.90361 0.89913 0.92247 0.75544 0.80393 0.83032 0.81498 0.80894 0.83452 0.88251 0.88659 0.96838 0.96991 0.94317 0.94910 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.62 71.98 0.62 -3.34 16 2 C 0.16 5.73 0.82 4.99 0.00 5.73 16 3 N -0.69 -24.12 5.17 -420.28 -2.17 -26.29 16 4 C 0.60 22.08 7.18 86.53 0.62 22.70 16 5 O -0.54 -21.97 13.59 -4.23 -0.06 -22.03 16 6 C -0.04 -1.50 7.07 24.00 0.17 -1.33 16 7 C -0.11 -3.35 10.80 23.79 0.26 -3.09 16 8 C -0.17 -4.28 6.38 -20.23 -0.13 -4.40 16 9 C -0.07 -1.22 10.06 22.24 0.22 -0.99 16 10 C -0.13 -1.77 9.98 22.03 0.22 -1.55 16 11 C -0.07 -0.99 10.01 22.31 0.22 -0.76 16 12 C -0.13 -2.55 10.07 22.35 0.23 -2.32 16 13 C 0.04 1.13 7.41 23.07 0.17 1.30 16 14 O -0.20 -6.40 10.28 -13.00 -0.13 -6.53 16 15 C -0.13 -4.41 5.99 31.78 0.19 -4.22 16 16 C 0.18 9.04 5.36 86.73 0.47 9.50 16 17 N -0.62 -33.35 3.39 -692.01 -2.35 -35.69 16 18 C -0.24 -14.48 10.28 84.03 0.86 -13.62 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 21 N -0.95 -57.46 10.31 21.65 0.22 -57.23 16 22 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C 0.13 5.72 6.11 86.86 0.53 6.25 16 27 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 29 H 0.06 1.86 6.45 -2.38 -0.02 1.85 16 30 H 0.41 13.46 8.20 -92.71 -0.76 12.70 16 31 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 34 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.10 3.01 8.04 -2.39 -0.02 2.99 16 37 H 0.09 2.76 8.05 -2.39 -0.02 2.74 16 38 H 0.01 0.73 7.38 -2.39 -0.02 0.72 16 39 H 0.01 0.65 7.51 -2.39 -0.02 0.63 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.03 1.62 6.31 -2.39 -0.02 1.60 16 42 H 0.03 1.47 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -75.35 347.92 2.95 -72.40 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.29 Total: 18.96 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.12 Total: 6.84 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -4.30 Total: -119.22 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.19 Total: -28.56 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -75.35 2.95 -72.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046819670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.002 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds