Wall clock time and date at job start Tue Mar 31 2020 11:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38675 * 119.27894 * 2 1 4 4 C 1.38006 * 119.63051 * 179.97438 * 3 2 1 5 5 C 1.41008 * 118.28061 * 359.75052 * 4 3 2 6 6 C 1.41017 * 120.70864 * 180.24683 * 5 4 3 7 7 H 1.08001 * 120.00018 * 154.91144 * 6 5 4 8 8 C 1.39952 * 119.99803 * 334.91801 * 6 5 4 9 9 N 1.30871 * 119.99741 * 343.58523 * 8 6 5 10 10 Si 1.86797 * 119.99794 * 163.59315 * 8 6 5 11 11 H 1.48499 * 109.47190 * 59.99593 * 10 8 6 12 12 H 1.48501 * 109.46995 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47060 * 299.99331 * 10 8 6 14 14 C 1.41708 * 118.58628 * 0.48825 * 5 4 3 15 15 N 1.38089 * 119.90450 * 179.77726 * 14 5 4 16 16 C 1.46503 * 119.99667 * 179.72246 * 15 14 5 17 17 H 1.08998 * 109.47604 * 324.99954 * 16 15 14 18 18 C 1.52999 * 109.46814 * 204.99753 * 16 15 14 19 19 C 1.53782 * 113.61302 * 180.02562 * 18 16 15 20 20 C 1.53780 * 87.08301 * 220.02203 * 19 18 16 21 21 C 1.53783 * 87.17352 * 25.39080 * 20 19 18 22 22 C 1.53004 * 109.47008 * 85.00745 * 16 15 14 23 23 F 1.39900 * 109.47271 * 180.02562 * 22 16 15 24 24 F 1.39902 * 109.46617 * 299.99465 * 22 16 15 25 25 F 1.39901 * 109.47242 * 59.99201 * 22 16 15 26 26 N 1.31976 * 119.27431 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.46843 * 270.02147 * 1 2 3 28 28 H 1.08995 * 109.46861 * 30.02518 * 1 2 3 29 29 H 1.09007 * 109.46766 * 150.02298 * 1 2 3 30 30 H 1.08004 * 120.18331 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.86453 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99119 * 179.97438 * 9 8 6 33 33 H 0.96993 * 120.00245 * 359.72522 * 15 14 5 34 34 H 1.08991 * 112.91352 * 311.25690 * 18 16 15 35 35 H 1.09007 * 113.61391 * 105.47677 * 19 18 16 36 36 H 1.09001 * 113.69705 * 334.58418 * 19 18 16 37 37 H 1.09005 * 113.61157 * 139.98425 * 20 19 18 38 38 H 1.09002 * 113.61532 * 270.80003 * 20 19 18 39 39 H 1.08997 * 113.61205 * 89.15563 * 21 20 19 40 40 H 1.08994 * 113.61276 * 220.06038 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2181 0.0005 5 6 4.2410 -0.0196 0.0065 6 6 5.6502 -0.0707 0.0125 7 1 6.1575 -0.9357 0.4134 8 6 6.3914 0.9997 -0.5009 9 7 5.8120 1.8893 -1.2663 10 14 8.2075 1.1585 -0.0937 11 1 8.9306 -0.0442 -0.5792 12 1 8.7592 2.3680 -0.7556 13 1 8.3765 1.2778 1.3768 14 6 3.4737 -1.2110 0.0010 15 7 4.1074 -2.4379 0.0020 16 6 3.3162 -3.6709 0.0024 17 1 2.4113 -3.5218 0.5915 18 6 4.1409 -4.8058 0.6130 19 6 3.3976 -6.1512 0.6600 20 6 4.0240 -6.3593 2.0489 21 6 4.1175 -4.8278 2.1522 22 6 2.9356 -4.0332 -1.4345 23 9 2.1795 -5.2103 -1.4341 24 9 2.1815 -2.9955 -1.9928 25 9 4.0971 -4.2246 -2.1905 26 7 2.1524 -1.1512 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6365 2.1398 0.0004 31 1 4.1136 2.1485 0.0010 32 1 6.3258 2.6313 -1.6217 33 1 5.0763 -2.4834 0.0023 34 1 5.1437 -4.8758 0.1916 35 1 3.7426 -6.8670 -0.0863 36 1 2.3123 -6.0516 0.6809 37 1 3.3420 -6.8050 2.7731 38 1 4.9943 -6.8551 2.0204 39 1 3.2296 -4.3642 2.5820 40 1 5.0428 -4.4768 2.6090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158401261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:03 Heat of formation + Delta-G solvation = -110.915734 kcal Electronic energy + Delta-G solvation = -27571.956034 eV Core-core repulsion = 23357.566953 eV Total energy + Delta-G solvation = -4214.389081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.45378 -47.03747 -46.81896 -39.22111 -38.39921 -34.92101 -34.15730 -31.14943 -30.34505 -28.46776 -27.29843 -25.61490 -24.91869 -23.98085 -22.02372 -20.94697 -20.49372 -19.46224 -17.94725 -17.72906 -17.29010 -17.07821 -16.21846 -15.87881 -15.19767 -14.82691 -14.18036 -13.97166 -13.85796 -13.71888 -13.43612 -13.37360 -13.26453 -13.03563 -13.00693 -12.60778 -12.52888 -12.31265 -12.08358 -11.88509 -11.74234 -11.61266 -11.44924 -11.38357 -11.13978 -10.87729 -10.62011 -10.52738 -10.35833 -10.23440 -9.84185 -9.30285 -9.09169 -8.16273 -7.91964 -6.89244 -6.64256 -4.29372 2.66649 2.98716 3.03038 3.04764 3.17368 3.43454 3.87437 3.88777 4.27889 4.46121 4.62281 4.69536 4.77360 4.84355 5.00211 5.06754 5.39391 5.53771 5.62147 5.73137 5.75123 5.80406 5.91037 5.94892 6.02856 6.12630 6.21185 6.40383 6.42587 6.48487 6.57023 6.72170 6.85768 7.06745 7.15325 7.53483 7.71571 7.93346 8.15017 8.32092 8.55502 8.72405 8.87377 9.68201 10.15009 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.005793 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.822410 B = 4831.889158 C = 5984.790976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.027 3.973 3 C -0.178 4.178 4 C -0.121 4.121 5 C 0.039 3.961 6 C -0.457 4.457 7 H 0.075 0.925 8 C 0.076 3.924 9 N -0.795 5.795 10 Si 0.907 3.093 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.291 3.709 15 N -0.711 5.711 16 C 0.147 3.853 17 H 0.118 0.882 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.143 4.143 21 C -0.122 4.122 22 C 0.427 3.573 23 F -0.196 7.196 24 F -0.169 7.169 25 F -0.192 7.192 26 N -0.515 5.515 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.281 0.719 33 H 0.411 0.589 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 -10.225 3.911 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.148 4.148 5 C 0.033 3.967 6 C -0.488 4.488 7 H 0.093 0.907 8 C -0.141 4.141 9 N -0.421 5.421 10 Si 0.732 3.268 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.189 1.189 14 C 0.055 3.945 15 N -0.349 5.349 16 C 0.035 3.965 17 H 0.136 0.864 18 C -0.144 4.144 19 C -0.169 4.169 20 C -0.180 4.180 21 C -0.160 4.160 22 C 0.370 3.630 23 F -0.177 7.177 24 F -0.150 7.150 25 F -0.173 7.173 26 N -0.232 5.232 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.731 -10.787 3.738 11.738 hybrid contribution 1.680 0.989 -0.422 1.995 sum -1.051 -9.797 3.316 10.396 Atomic orbital electron populations 1.20287 0.91718 1.00905 1.00269 1.19926 0.94304 0.87844 1.08781 1.21261 0.95334 0.96740 1.06700 1.21365 0.92136 0.98171 1.03111 1.17855 0.93823 0.89892 0.95156 1.19111 0.90722 1.02985 1.36001 0.90698 1.25815 1.00847 0.94845 0.92619 1.69803 1.38640 1.11127 1.22518 0.86376 0.82024 0.78593 0.79802 1.19058 1.20358 1.18905 1.18293 0.88100 0.85011 1.03086 1.43545 1.07468 1.00028 1.83863 1.21688 0.98713 0.87224 0.88836 0.86396 1.22909 1.00111 0.93762 0.97601 1.23006 1.00636 0.95881 0.97420 1.22831 1.01063 0.96645 0.97468 1.22867 1.02925 0.95960 0.94213 1.21992 0.74480 0.73947 0.92610 1.93092 1.77483 1.50081 1.97078 1.93239 1.76529 1.58012 1.87252 1.93112 1.49707 1.95079 1.79437 1.66262 1.08117 1.30061 1.18741 0.93247 0.92880 0.92675 0.88637 0.85597 0.90787 0.75107 0.88060 0.91158 0.89236 0.91369 0.90283 0.89654 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.15 36.01 0.37 -0.98 16 2 C 0.03 0.60 6.79 -82.37 -0.56 0.05 16 3 C -0.18 -4.14 9.69 -39.51 -0.38 -4.52 16 4 C -0.12 -3.08 8.79 -38.62 -0.34 -3.42 16 5 C 0.04 1.01 5.60 -106.47 -0.60 0.41 16 6 C -0.46 -11.31 8.52 -37.89 -0.32 -11.63 16 7 H 0.07 1.72 6.70 -52.49 -0.35 1.37 16 8 C 0.08 1.84 5.19 -17.32 -0.09 1.75 16 9 N -0.80 -20.02 10.95 55.55 0.61 -19.41 16 10 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 11 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 14 C 0.29 6.87 7.05 -155.02 -1.09 5.77 16 15 N -0.71 -14.08 5.04 -53.48 -0.27 -14.35 16 16 C 0.15 2.46 1.97 -67.93 -0.13 2.32 16 17 H 0.12 2.07 7.34 -51.93 -0.38 1.69 16 18 C -0.12 -1.64 3.06 -89.71 -0.27 -1.91 16 19 C -0.13 -1.49 5.87 -25.92 -0.15 -1.64 16 20 C -0.14 -1.41 8.08 -25.92 -0.21 -1.62 16 21 C -0.12 -1.43 7.65 -25.82 -0.20 -1.63 16 22 C 0.43 7.69 2.81 37.16 0.10 7.80 16 23 F -0.20 -3.15 14.65 2.25 0.03 -3.11 16 24 F -0.17 -3.63 15.57 2.25 0.04 -3.59 16 25 F -0.19 -3.54 16.95 2.25 0.04 -3.50 16 26 N -0.52 -12.01 7.89 -8.11 -0.06 -12.07 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 31 H 0.13 3.27 6.26 -52.49 -0.33 2.95 16 32 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 33 H 0.41 7.88 6.81 -40.82 -0.28 7.60 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.03 7.33 -51.93 -0.38 0.65 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.05 7.97 -51.93 -0.41 0.63 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -27.28 337.00 -8.52 -35.80 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.07 Total: 11.41 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.88 Total: -9.26 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.28 Total: -45.83 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 0.11 Total: -10.21 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.28 -8.52 -35.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158401261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.113 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds