Wall clock time and date at job start Tue Mar 31 2020 11:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38675 * 119.27894 * 2 1 4 4 C 1.38006 * 119.63051 * 179.97438 * 3 2 1 5 5 C 1.41008 * 118.28061 * 359.75052 * 4 3 2 6 6 C 1.41017 * 120.70864 * 180.24683 * 5 4 3 7 7 H 1.08001 * 120.00018 * 154.91144 * 6 5 4 8 8 C 1.39952 * 119.99803 * 334.91801 * 6 5 4 9 9 N 1.30871 * 119.99741 * 343.58523 * 8 6 5 10 10 Si 1.86797 * 119.99794 * 163.59315 * 8 6 5 11 11 H 1.48499 * 109.47190 * 59.99593 * 10 8 6 12 12 H 1.48501 * 109.46995 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47060 * 299.99331 * 10 8 6 14 14 C 1.41708 * 118.58628 * 0.48825 * 5 4 3 15 15 N 1.38089 * 119.90450 * 179.77726 * 14 5 4 16 16 C 1.46503 * 119.99667 * 179.72246 * 15 14 5 17 17 H 1.08998 * 109.47604 * 324.99954 * 16 15 14 18 18 C 1.52999 * 109.46814 * 204.99753 * 16 15 14 19 19 C 1.53782 * 113.61302 * 180.02562 * 18 16 15 20 20 C 1.53780 * 87.08301 * 220.02203 * 19 18 16 21 21 C 1.53783 * 87.17352 * 25.39080 * 20 19 18 22 22 C 1.53004 * 109.47008 * 85.00745 * 16 15 14 23 23 F 1.39900 * 109.47271 * 180.02562 * 22 16 15 24 24 F 1.39902 * 109.46617 * 299.99465 * 22 16 15 25 25 F 1.39901 * 109.47242 * 59.99201 * 22 16 15 26 26 N 1.31976 * 119.27431 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.46843 * 270.02147 * 1 2 3 28 28 H 1.08995 * 109.46861 * 30.02518 * 1 2 3 29 29 H 1.09007 * 109.46766 * 150.02298 * 1 2 3 30 30 H 1.08004 * 120.18331 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.86453 * 180.02562 * 4 3 2 32 32 H 0.97000 * 119.99119 * 179.97438 * 9 8 6 33 33 H 0.96993 * 120.00245 * 359.72522 * 15 14 5 34 34 H 1.08991 * 112.91352 * 311.25690 * 18 16 15 35 35 H 1.09007 * 113.61391 * 105.47677 * 19 18 16 36 36 H 1.09001 * 113.69705 * 334.58418 * 19 18 16 37 37 H 1.09005 * 113.61157 * 139.98425 * 20 19 18 38 38 H 1.09002 * 113.61532 * 270.80003 * 20 19 18 39 39 H 1.08997 * 113.61205 * 89.15563 * 21 20 19 40 40 H 1.08994 * 113.61276 * 220.06038 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2181 0.0005 5 6 4.2410 -0.0196 0.0065 6 6 5.6502 -0.0707 0.0125 7 1 6.1575 -0.9357 0.4134 8 6 6.3914 0.9997 -0.5009 9 7 5.8120 1.8893 -1.2663 10 14 8.2075 1.1585 -0.0937 11 1 8.9306 -0.0442 -0.5792 12 1 8.7592 2.3680 -0.7556 13 1 8.3765 1.2778 1.3768 14 6 3.4737 -1.2110 0.0010 15 7 4.1074 -2.4379 0.0020 16 6 3.3162 -3.6709 0.0024 17 1 2.4113 -3.5218 0.5915 18 6 4.1409 -4.8058 0.6130 19 6 3.3976 -6.1512 0.6600 20 6 4.0240 -6.3593 2.0489 21 6 4.1175 -4.8278 2.1522 22 6 2.9356 -4.0332 -1.4345 23 9 2.1795 -5.2103 -1.4341 24 9 2.1815 -2.9955 -1.9928 25 9 4.0971 -4.2246 -2.1905 26 7 2.1524 -1.1512 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5135 30 1 1.6365 2.1398 0.0004 31 1 4.1136 2.1485 0.0010 32 1 6.3258 2.6313 -1.6217 33 1 5.0763 -2.4834 0.0023 34 1 5.1437 -4.8758 0.1916 35 1 3.7426 -6.8670 -0.0863 36 1 2.3123 -6.0516 0.6809 37 1 3.3420 -6.8050 2.7731 38 1 4.9943 -6.8551 2.0204 39 1 3.2296 -4.3642 2.5820 40 1 5.0428 -4.4768 2.6090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158401261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:03 Heat of formation + Delta-G solvation = -123.367825 kcal Electronic energy + Delta-G solvation = -27572.495997 eV Core-core repulsion = 23357.566953 eV Total energy + Delta-G solvation = -4214.929045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = -0.86 seconds Orbital eigenvalues (eV) -50.93537 -48.46974 -48.39048 -40.65350 -39.77206 -36.45188 -35.94606 -32.83018 -32.06083 -30.00479 -28.99325 -26.59132 -26.08590 -25.68111 -23.52920 -22.66151 -22.11893 -20.49660 -19.40995 -19.20113 -19.12215 -18.52289 -17.82742 -17.32297 -16.77788 -16.04294 -15.64598 -15.56517 -15.35709 -15.16723 -15.01879 -14.86562 -14.70326 -14.58810 -14.49276 -14.27671 -13.90469 -13.74116 -13.39078 -13.25868 -13.20439 -13.06978 -12.91021 -12.84615 -12.53605 -12.48056 -12.19207 -11.71269 -11.53748 -11.30619 -11.19609 -11.08334 -10.71755 -9.99641 -9.75623 -8.68605 -8.41186 -6.15718 0.89613 1.17409 1.40374 1.49985 1.54454 1.95825 2.21609 2.37210 2.80291 2.93894 3.15711 3.45060 3.69418 3.76560 3.78801 3.87682 3.99834 4.17081 4.22966 4.38771 4.51677 4.73025 4.83285 4.87854 4.88986 4.93785 4.99924 5.05921 5.11557 5.14834 5.16012 5.25168 5.28784 5.41554 5.58037 5.73901 5.88234 6.11845 6.32888 6.66512 6.73440 6.88593 7.05992 7.87582 8.37681 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.005793 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.822410 B = 4831.889158 C = 5984.790976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.020 3.980 3 C -0.191 4.191 4 C -0.144 4.144 5 C 0.005 3.995 6 C -0.481 4.481 7 H 0.084 0.916 8 C 0.034 3.966 9 N -0.832 5.832 10 Si 0.979 3.021 11 H -0.258 1.258 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.289 3.711 15 N -0.706 5.706 16 C 0.152 3.848 17 H 0.111 0.889 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.124 4.124 22 C 0.425 3.575 23 F -0.182 7.182 24 F -0.192 7.192 25 F -0.194 7.194 26 N -0.523 5.523 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.285 0.715 33 H 0.412 0.588 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -11.831 4.771 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 C -0.213 4.213 4 C -0.171 4.171 5 C -0.002 4.002 6 C -0.511 4.511 7 H 0.102 0.898 8 C -0.180 4.180 9 N -0.458 5.458 10 Si 0.800 3.200 11 H -0.182 1.182 12 H -0.200 1.200 13 H -0.185 1.185 14 C 0.052 3.948 15 N -0.344 5.344 16 C 0.042 3.958 17 H 0.129 0.871 18 C -0.147 4.147 19 C -0.167 4.167 20 C -0.163 4.163 21 C -0.161 4.161 22 C 0.369 3.631 23 F -0.163 7.163 24 F -0.174 7.174 25 F -0.176 7.176 26 N -0.241 5.241 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.543 -12.428 4.600 13.494 hybrid contribution 1.496 1.442 -0.718 2.198 sum -1.047 -10.986 3.882 11.699 Atomic orbital electron populations 1.20333 0.88383 1.01980 1.01907 1.20723 0.96637 0.87431 1.06723 1.21504 0.94766 0.98156 1.06893 1.21387 0.93239 0.97803 1.04670 1.18212 0.94763 0.90738 0.96480 1.19388 0.90891 1.04045 1.36823 0.89793 1.26662 1.05206 0.94160 0.91941 1.69882 1.40475 1.11874 1.23605 0.85291 0.76445 0.78725 0.79520 1.18247 1.19979 1.18490 1.18533 0.88370 0.85962 1.01927 1.43582 1.07715 1.00023 1.83102 1.21864 0.98782 0.87155 0.88024 0.87126 1.23040 0.99989 0.93250 0.98438 1.23023 1.00404 0.94542 0.98779 1.22777 1.01973 0.95069 0.96516 1.22881 1.02709 0.97730 0.92777 1.22153 0.74245 0.73886 0.92841 1.93115 1.77125 1.49065 1.97030 1.93192 1.77171 1.59293 1.87713 1.93103 1.49836 1.95069 1.79612 1.66440 1.07887 1.30368 1.19360 0.91199 0.90901 0.92484 0.86526 0.87222 0.90421 0.74967 0.87593 0.90455 0.89489 0.89901 0.88842 0.90427 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.35 10.15 71.24 0.72 -1.63 16 2 C 0.02 0.90 6.79 42.64 0.29 1.18 16 3 C -0.19 -8.96 9.69 22.32 0.22 -8.74 16 4 C -0.14 -7.57 8.79 22.89 0.20 -7.37 16 5 C 0.00 0.25 5.60 -21.06 -0.12 0.13 16 6 C -0.48 -24.29 8.52 23.37 0.20 -24.09 16 7 H 0.08 3.91 6.70 -2.91 -0.02 3.89 16 8 C 0.03 1.68 5.19 85.25 0.44 2.12 16 9 N -0.83 -43.08 10.95 21.83 0.24 -42.84 16 10 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 11 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 12 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 13 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 14 C 0.29 13.84 7.05 134.05 0.95 14.78 16 15 N -0.71 -28.08 5.04 -323.13 -1.63 -29.71 16 16 C 0.15 5.00 1.97 44.99 0.09 5.09 16 17 H 0.11 3.84 7.34 -2.39 -0.02 3.82 16 18 C -0.13 -3.16 3.06 -10.21 -0.03 -3.20 16 19 C -0.13 -2.62 5.87 31.12 0.18 -2.44 16 20 C -0.13 -2.10 8.08 31.12 0.25 -1.85 16 21 C -0.12 -2.66 7.65 31.18 0.24 -2.42 16 22 C 0.43 15.09 2.81 71.98 0.20 15.29 16 23 F -0.18 -5.61 14.65 44.97 0.66 -4.95 16 24 F -0.19 -8.26 15.57 44.97 0.70 -7.56 16 25 F -0.19 -7.06 16.95 44.97 0.76 -6.30 16 26 N -0.52 -24.42 7.89 -179.57 -1.42 -25.83 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 29 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 31 H 0.11 5.99 6.26 -2.91 -0.02 5.97 16 32 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 33 H 0.41 15.89 6.81 -92.71 -0.63 15.25 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.09 1.82 7.33 -2.39 -0.02 1.80 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.80 7.97 -2.39 -0.02 1.78 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -59.61 337.00 5.63 -53.98 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.45 Total: 37.21 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.83 Total: -13.13 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -2.80 Total: -98.39 kcal Atomic # 9 Polarization: -20.92 SS G_CDS: 2.12 Total: -18.80 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -59.61 5.63 -53.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158401261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.388 kcal (2) G-P(sol) polarization free energy of solvation -59.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.86 seconds