Wall clock time and date at job start Tue Mar 31 2020 11:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38680 * 119.27451 * 2 1 4 4 C 1.38008 * 119.62692 * 180.02562 * 3 2 1 5 5 C 1.41005 * 118.28146 * 359.75412 * 4 3 2 6 6 C 1.41016 * 120.70798 * 180.24465 * 5 4 3 7 7 H 1.08001 * 120.00208 * 155.36837 * 6 5 4 8 8 C 1.39953 * 120.00102 * 335.36453 * 6 5 4 9 9 N 1.30870 * 119.99442 * 343.77935 * 8 6 5 10 10 Si 1.86793 * 120.00053 * 163.77900 * 8 6 5 11 11 H 1.48501 * 109.47588 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46905 * 120.00303 * 10 8 6 13 13 H 1.48501 * 109.47392 * 239.99942 * 10 8 6 14 14 C 1.41711 * 118.58751 * 0.48298 * 5 4 3 15 15 N 1.38084 * 119.90441 * 179.77924 * 14 5 4 16 16 C 1.39778 * 111.00137 * 114.40358 * 15 14 5 17 17 C 1.54426 * 111.77050 * 189.12670 * 16 15 14 18 18 C 1.50760 * 109.02578 * 282.58411 * 17 16 15 19 19 H 1.09003 * 108.85379 * 213.82316 * 18 17 16 20 20 F 1.39896 * 108.85386 * 332.20999 * 18 17 16 21 21 C 1.54170 * 112.60699 * 93.02065 * 18 17 16 22 22 F 1.39900 * 108.98215 * 79.13193 * 21 18 17 23 23 F 1.39900 * 108.98091 * 197.93066 * 21 18 17 24 24 C 1.53819 * 111.96847 * 318.48584 * 21 18 17 25 25 C 1.47640 * 110.99850 * 243.29036 * 15 14 5 26 26 N 1.31968 * 119.27884 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47254 * 269.98074 * 1 2 3 28 28 H 1.09003 * 109.47311 * 29.98055 * 1 2 3 29 29 H 1.09000 * 109.46611 * 149.97619 * 1 2 3 30 30 H 1.07998 * 120.18616 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.86285 * 180.02562 * 4 3 2 32 32 H 0.97006 * 119.99626 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.01602 * 309.71147 * 16 15 14 34 34 H 1.09000 * 109.02191 * 68.53168 * 16 15 14 35 35 H 1.08996 * 109.54936 * 42.44754 * 17 16 15 36 36 H 1.09002 * 109.54842 * 162.72381 * 17 16 15 37 37 H 1.09001 * 109.05196 * 79.60154 * 24 21 18 38 38 H 1.09002 * 109.04908 * 198.56220 * 24 21 18 39 39 H 1.09000 * 109.74456 * 269.98885 * 25 15 14 40 40 H 1.08998 * 109.74837 * 30.71098 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2182 -0.0005 5 6 4.2409 -0.0194 0.0043 6 6 5.6501 -0.0704 0.0091 7 1 6.1577 -0.9388 0.4024 8 6 6.3910 1.0042 -0.4958 9 7 5.8104 1.9020 -1.2504 10 14 8.2085 1.1569 -0.0926 11 1 8.6211 0.0218 0.7715 12 1 8.9981 1.1337 -1.3501 13 1 8.4516 2.4365 0.6208 14 6 3.4737 -1.2109 -0.0011 15 7 4.1074 -2.4377 -0.0012 16 6 3.8538 -3.1327 1.1848 17 6 4.7283 -4.3999 1.3043 18 6 4.1523 -5.4793 0.4235 19 1 4.3191 -6.4468 0.8972 20 9 2.7745 -5.2723 0.2970 21 6 4.7847 -5.4974 -0.9824 22 9 6.0265 -6.1380 -0.9146 23 9 3.9504 -6.2134 -1.8475 24 6 4.9835 -4.0785 -1.5422 25 6 3.8045 -3.1896 -1.2352 26 7 2.1524 -1.1511 -0.0005 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3632 -0.8898 -0.5142 30 1 1.6364 2.1399 0.0004 31 1 4.1135 2.1487 -0.0001 32 1 6.3238 2.6471 -1.6000 33 1 4.0600 -2.4776 2.0313 34 1 2.8033 -3.4223 1.2091 35 1 5.7453 -4.1726 0.9848 36 1 4.7374 -4.7404 2.3397 37 1 5.8808 -3.6444 -1.1010 38 1 5.1116 -4.1372 -2.6231 39 1 2.9131 -3.7988 -1.0857 40 1 3.6426 -2.4949 -2.0594 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163784926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:39 Heat of formation + Delta-G solvation = -109.093652 kcal Electronic energy + Delta-G solvation = -27753.335755 eV Core-core repulsion = 23539.025684 eV Total energy + Delta-G solvation = -4214.310070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.15336 -47.84401 -46.81793 -39.38201 -37.22390 -34.26191 -33.20988 -31.90434 -30.91936 -29.83735 -27.78619 -26.13314 -24.79283 -23.95433 -21.87673 -20.62522 -20.14488 -19.92011 -17.73851 -17.42274 -17.32574 -17.02113 -16.06722 -15.62864 -15.38159 -15.16910 -14.66855 -14.46982 -13.96587 -13.80246 -13.54516 -13.28600 -13.14382 -13.10227 -12.83314 -12.63526 -12.33945 -12.18380 -12.03914 -11.68661 -11.60218 -11.48076 -11.31147 -11.09536 -11.02990 -10.94324 -10.81593 -10.59052 -10.47976 -10.06618 -9.82923 -9.37580 -8.40160 -8.15959 -7.47992 -7.42675 -6.86655 -4.43728 2.52855 2.85288 3.01360 3.06491 3.14377 3.40383 3.83306 4.02090 4.23244 4.32549 4.51992 4.64855 4.68036 4.91249 5.04377 5.44164 5.50310 5.65332 5.67667 5.76115 5.80638 5.86850 5.97266 6.07895 6.22802 6.28243 6.34044 6.39408 6.49842 6.51581 6.57042 6.85936 6.92833 7.07970 7.12602 7.55999 7.68638 7.97199 8.00556 8.26980 8.55870 8.66241 8.89552 9.57443 10.02203 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.006127 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.738670 B = 4569.035570 C = 6282.941754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.009 4.009 3 C -0.144 4.144 4 C -0.136 4.136 5 C 0.091 3.909 6 C -0.415 4.415 7 H 0.092 0.908 8 C 0.069 3.931 9 N -0.789 5.789 10 Si 0.910 3.090 11 H -0.257 1.257 12 H -0.274 1.274 13 H -0.273 1.273 14 C 0.157 3.843 15 N -0.466 5.466 16 C 0.076 3.924 17 C -0.148 4.148 18 C 0.068 3.932 19 H 0.096 0.904 20 F -0.185 7.185 21 C 0.265 3.735 22 F -0.196 7.196 23 F -0.196 7.196 24 C -0.153 4.153 25 C 0.069 3.931 26 N -0.484 5.484 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.282 0.718 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 -7.932 2.331 8.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.149 4.149 3 C -0.164 4.164 4 C -0.162 4.162 5 C 0.085 3.915 6 C -0.444 4.444 7 H 0.110 0.890 8 C -0.149 4.149 9 N -0.414 5.414 10 Si 0.735 3.265 11 H -0.181 1.181 12 H -0.200 1.200 13 H -0.198 1.198 14 C -0.074 4.074 15 N -0.187 5.187 16 C -0.053 4.053 17 C -0.186 4.186 18 C 0.030 3.970 19 H 0.114 0.886 20 F -0.165 7.165 21 C 0.228 3.772 22 F -0.177 7.177 23 F -0.177 7.177 24 C -0.191 4.191 25 C -0.058 4.058 26 N -0.195 5.195 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.305 -8.464 2.166 8.742 hybrid contribution 0.530 0.634 -0.080 0.830 sum 0.834 -7.829 2.086 8.145 Atomic orbital electron populations 1.20270 0.91886 1.00700 1.00195 1.19993 0.94450 0.88242 1.12253 1.21432 0.95380 0.96916 1.02709 1.21659 0.92336 0.98794 1.03429 1.18109 0.94153 0.89820 0.89406 1.19560 0.90842 1.01547 1.32459 0.88986 1.26078 1.01472 0.94604 0.92755 1.69831 1.38715 1.10472 1.22356 0.86213 0.81581 0.79417 0.79335 1.18095 1.19955 1.19781 1.19078 0.86235 0.89131 1.12981 1.56250 1.58829 1.02657 1.00995 1.20837 0.97717 0.93232 0.93552 1.22185 1.02275 0.94727 0.99435 1.22244 0.77756 1.02828 0.94134 0.88586 1.92832 1.30929 1.96226 1.96550 1.22426 0.74969 0.89823 0.89969 1.93001 1.43853 1.84030 1.96839 1.93015 1.72222 1.80594 1.71873 1.22516 1.03899 0.90001 1.02724 1.21720 0.94906 0.95800 0.93370 1.66744 1.11134 1.30298 1.11332 0.93429 0.93048 0.92857 0.88503 0.85420 0.90705 0.90783 0.93753 0.88504 0.89337 0.86834 0.89294 0.92156 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.95 16 2 C -0.01 -0.20 6.79 -82.37 -0.56 -0.76 16 3 C -0.14 -3.25 9.69 -39.50 -0.38 -3.63 16 4 C -0.14 -3.33 8.79 -38.62 -0.34 -3.67 16 5 C 0.09 2.27 5.60 -106.47 -0.60 1.68 16 6 C -0.41 -10.04 8.71 -37.89 -0.33 -10.37 16 7 H 0.09 2.17 7.60 -52.49 -0.40 1.77 16 8 C 0.07 1.61 5.20 -17.32 -0.09 1.52 16 9 N -0.79 -18.98 10.91 55.55 0.61 -18.37 16 10 Si 0.91 17.48 29.59 -169.99 -5.03 12.45 16 11 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 14 C 0.16 3.66 4.93 -155.03 -0.76 2.90 16 15 N -0.47 -9.32 3.11 -177.76 -0.55 -9.87 16 16 C 0.08 1.35 4.71 -6.75 -0.03 1.32 16 17 C -0.15 -2.01 5.61 -27.11 -0.15 -2.17 16 18 C 0.07 0.93 3.46 -27.24 -0.09 0.83 16 19 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 20 F -0.18 -3.01 12.56 2.25 0.03 -2.99 16 21 C 0.26 3.88 1.82 -25.69 -0.05 3.83 16 22 F -0.20 -2.80 17.02 2.25 0.04 -2.77 16 23 F -0.20 -3.11 16.68 2.25 0.04 -3.07 16 24 C -0.15 -2.38 4.85 -27.40 -0.13 -2.51 16 25 C 0.07 1.28 5.15 -4.51 -0.02 1.25 16 26 N -0.48 -11.35 9.78 -8.11 -0.08 -11.43 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.13 3.19 6.22 -52.49 -0.33 2.87 16 32 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 33 H 0.07 1.37 7.97 -51.93 -0.41 0.96 16 34 H 0.04 0.86 6.41 -51.93 -0.33 0.52 16 35 H 0.10 1.31 7.11 -51.93 -0.37 0.94 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.11 1.78 7.26 -51.93 -0.38 1.41 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.16 5.57 -51.93 -0.29 0.87 16 40 H 0.08 1.68 7.79 -51.93 -0.40 1.27 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -26.47 327.52 -8.20 -34.66 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.00 Total: 7.17 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.18 Total: -10.74 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.03 Total: -39.67 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 0.10 Total: -8.82 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.47 -8.20 -34.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163784926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.430 kcal (2) G-P(sol) polarization free energy of solvation -26.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds