Wall clock time and date at job start Tue Mar 31 2020 11:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38684 * 119.27503 * 2 1 4 4 C 1.38007 * 119.62221 * 179.97438 * 3 2 1 5 5 C 1.41000 * 118.28797 * 359.97438 * 4 3 2 6 6 C 1.41010 * 120.70817 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99842 * 154.74084 * 6 5 4 8 8 C 1.39950 * 120.00098 * 334.74298 * 6 5 4 9 9 N 1.30863 * 119.99902 * 334.97351 * 8 6 5 10 10 Si 1.86804 * 119.99724 * 154.97467 * 8 6 5 11 11 H 1.48500 * 109.46911 * 269.99361 * 10 8 6 12 12 H 1.48499 * 109.47428 * 29.99993 * 10 8 6 13 13 H 1.48507 * 109.46851 * 150.00284 * 10 8 6 14 14 C 1.41714 * 118.58174 * 0.27192 * 5 4 3 15 15 N 1.38093 * 119.89972 * 179.70400 * 14 5 4 16 16 C 1.39775 * 110.99935 * 114.74904 * 15 14 5 17 17 C 1.54430 * 111.77062 * 189.12983 * 16 15 14 18 18 C 1.50763 * 109.02099 * 282.58221 * 17 16 15 19 19 H 1.08996 * 108.85616 * 332.21237 * 18 17 16 20 20 F 1.39895 * 108.85329 * 213.82515 * 18 17 16 21 21 C 1.54175 * 112.60559 * 93.01956 * 18 17 16 22 22 F 1.39901 * 108.98192 * 79.12868 * 21 18 17 23 23 F 1.39905 * 108.97474 * 197.84446 * 21 18 17 24 24 C 1.53812 * 111.96947 * 318.48486 * 21 18 17 25 25 C 1.47634 * 111.00184 * 243.63432 * 15 14 5 26 26 N 1.31969 * 119.27607 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47045 * 90.00084 * 1 2 3 28 28 H 1.08998 * 109.47419 * 209.99998 * 1 2 3 29 29 H 1.09002 * 109.47016 * 330.00811 * 1 2 3 30 30 H 1.07999 * 120.18930 * 359.94859 * 3 2 1 31 31 H 1.08004 * 120.85902 * 180.02562 * 4 3 2 32 32 H 0.96999 * 119.99963 * 354.23641 * 9 8 6 33 33 H 1.09008 * 109.01613 * 309.70999 * 16 15 14 34 34 H 1.09000 * 109.02473 * 68.52838 * 16 15 14 35 35 H 1.08995 * 109.55056 * 42.44317 * 17 16 15 36 36 H 1.08999 * 109.54837 * 162.63129 * 17 16 15 37 37 H 1.09008 * 109.05018 * 79.60019 * 24 21 18 38 38 H 1.09008 * 109.05006 * 198.56570 * 24 21 18 39 39 H 1.09005 * 109.74790 * 269.99264 * 25 15 14 40 40 H 1.09007 * 109.74457 * 30.71128 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2181 0.0005 5 6 4.2409 -0.0195 0.0016 6 6 5.6501 -0.0705 0.0028 7 1 6.1588 -0.9352 0.4027 8 6 6.3895 0.9994 -0.5143 9 7 5.8563 1.7911 -1.4095 10 14 8.1374 1.2972 0.0735 11 1 8.1165 2.2038 1.2495 12 1 8.7580 0.0036 0.4567 13 1 8.9273 1.9211 -1.0184 14 6 3.4736 -1.2109 -0.0038 15 7 4.1074 -2.4378 -0.0091 16 6 3.8516 -3.1387 1.1729 17 6 4.7259 -4.4065 1.2875 18 6 4.1514 -5.4815 0.4002 19 1 3.0781 -5.3197 0.3005 20 9 4.3643 -6.7262 1.0022 21 6 4.7863 -5.4923 -1.0047 22 9 6.0280 -6.1333 -0.9380 23 9 3.9543 -6.2056 -1.8744 24 6 4.9861 -4.0707 -1.5568 25 6 3.8066 -3.1833 -1.2473 26 7 2.1523 -1.1511 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 1.6364 2.1399 -0.0008 31 1 4.1136 2.1486 0.0010 32 1 4.9814 1.5888 -1.7763 33 1 4.0563 -2.4880 2.0231 34 1 2.8010 -3.4285 1.1939 35 1 5.7435 -4.1777 0.9710 36 1 4.7345 -4.7514 2.3215 37 1 5.8826 -3.6389 -1.1118 38 1 5.1161 -4.1239 -2.6378 39 1 2.9149 -3.7933 -1.1026 40 1 3.6462 -2.4844 -2.0683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163784928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:44 Heat of formation + Delta-G solvation = -121.392921 kcal Electronic energy + Delta-G solvation = -27507.858874 eV Core-core repulsion = 23293.015467 eV Total energy + Delta-G solvation = -4214.843406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.23362 -47.56093 -46.92484 -39.76197 -37.66438 -34.66701 -33.39986 -31.97092 -30.81941 -29.93751 -27.73059 -25.98476 -24.89098 -24.00625 -22.23475 -20.79431 -20.49564 -20.10154 -18.12170 -17.71646 -17.42923 -16.89730 -16.17289 -15.76611 -15.22367 -14.94620 -14.62626 -14.57221 -14.09442 -13.99735 -13.76909 -13.32125 -13.30883 -13.24122 -13.07926 -12.79406 -12.60252 -12.47468 -11.96542 -11.81246 -11.74860 -11.63807 -11.47303 -11.22659 -11.06650 -10.98151 -10.89315 -10.63072 -10.52380 -10.22820 -9.81691 -9.31842 -8.63944 -8.46553 -7.76326 -7.66205 -7.33211 -4.59514 2.38844 2.64370 3.07605 3.16804 3.25723 3.37592 3.87246 3.91299 4.16241 4.23293 4.37663 4.42567 4.68873 4.85356 4.99272 5.20476 5.34618 5.48552 5.56390 5.60546 5.66434 5.70184 5.82739 5.89916 6.06535 6.12792 6.13480 6.24867 6.27189 6.31449 6.36435 6.60300 6.72045 6.83895 7.20482 7.40914 7.57491 7.77075 7.79946 7.90501 8.15224 8.60712 8.67527 9.36277 9.82583 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.005649 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.895201 B = 4955.736648 C = 6512.724684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.025 4.025 3 C -0.121 4.121 4 C -0.192 4.192 5 C 0.075 3.925 6 C -0.467 4.467 7 H 0.092 0.908 8 C 0.034 3.966 9 N -0.786 5.786 10 Si 1.067 2.933 11 H -0.274 1.274 12 H -0.272 1.272 13 H -0.276 1.276 14 C 0.153 3.847 15 N -0.467 5.467 16 C 0.085 3.915 17 C -0.146 4.146 18 C 0.063 3.937 19 H 0.106 0.894 20 F -0.201 7.201 21 C 0.268 3.732 22 F -0.194 7.194 23 F -0.199 7.199 24 C -0.153 4.153 25 C 0.079 3.921 26 N -0.476 5.476 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.300 0.700 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -6.714 1.767 7.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.164 4.164 3 C -0.141 4.141 4 C -0.218 4.218 5 C 0.068 3.932 6 C -0.494 4.494 7 H 0.110 0.890 8 C -0.189 4.189 9 N -0.408 5.408 10 Si 0.890 3.110 11 H -0.200 1.200 12 H -0.197 1.197 13 H -0.201 1.201 14 C -0.080 4.080 15 N -0.188 5.188 16 C -0.045 4.045 17 C -0.184 4.184 18 C 0.026 3.974 19 H 0.124 0.876 20 F -0.182 7.182 21 C 0.231 3.769 22 F -0.175 7.175 23 F -0.180 7.180 24 C -0.191 4.191 25 C -0.048 4.048 26 N -0.187 5.187 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.114 -6.418 1.573 6.609 hybrid contribution -1.677 -0.618 0.024 1.787 sum -1.563 -7.036 1.597 7.383 Atomic orbital electron populations 1.20246 0.91646 1.00689 1.00308 1.19919 0.94520 0.88034 1.13899 1.21363 0.94931 0.97172 1.00614 1.21462 0.93258 0.97826 1.09293 1.18120 0.94265 0.90046 0.90772 1.20575 0.91147 1.04583 1.33144 0.89016 1.27196 1.06971 0.91604 0.93145 1.70467 1.19006 1.34681 1.16680 0.83594 0.72775 0.77475 0.77161 1.19952 1.19714 1.20110 1.18953 0.86156 0.89015 1.13860 1.56183 1.58964 1.02679 1.00962 1.20857 0.96220 0.93607 0.93798 1.22194 1.02304 0.94006 0.99905 1.22595 1.02848 0.81536 0.90457 0.87649 1.92864 1.96549 1.44289 1.84504 1.22444 0.75231 0.89745 0.89463 1.93013 1.43601 1.83971 1.96888 1.93018 1.72340 1.80939 1.71716 1.22504 1.03809 0.89777 1.03055 1.21608 0.94035 0.95639 0.93490 1.66693 1.11058 1.30499 1.10483 0.93400 0.92868 0.93013 0.88247 0.86711 0.88657 0.90200 0.95219 0.88753 0.88778 0.86547 0.88889 0.93829 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.15 36.01 0.37 -0.84 16 2 C -0.02 -0.52 6.79 -82.37 -0.56 -1.08 16 3 C -0.12 -2.58 9.69 -39.50 -0.38 -2.96 16 4 C -0.19 -4.49 8.04 -38.62 -0.31 -4.80 16 5 C 0.07 1.77 5.33 -106.47 -0.57 1.21 16 6 C -0.47 -10.96 8.63 -37.89 -0.33 -11.29 16 7 H 0.09 2.12 7.68 -52.49 -0.40 1.72 16 8 C 0.03 0.77 4.98 -17.32 -0.09 0.69 16 9 N -0.79 -19.05 12.34 55.55 0.69 -18.36 16 10 Si 1.07 19.80 30.00 -169.99 -5.10 14.70 16 11 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 12 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 13 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 14 C 0.15 3.37 4.93 -155.02 -0.76 2.61 16 15 N -0.47 -8.75 3.12 -177.76 -0.55 -9.31 16 16 C 0.08 1.40 4.76 -6.75 -0.03 1.37 16 17 C -0.15 -2.02 5.40 -27.10 -0.15 -2.17 16 18 C 0.06 0.89 2.89 -27.24 -0.08 0.81 16 19 H 0.11 1.44 6.58 -51.93 -0.34 1.10 16 20 F -0.20 -3.09 16.63 2.25 0.04 -3.05 16 21 C 0.27 3.98 1.74 -25.69 -0.04 3.94 16 22 F -0.19 -3.07 16.69 2.25 0.04 -3.03 16 23 F -0.20 -3.10 17.02 2.25 0.04 -3.06 16 24 C -0.15 -2.25 4.85 -27.41 -0.13 -2.38 16 25 C 0.08 1.34 5.16 -4.52 -0.02 1.31 16 26 N -0.48 -10.48 9.77 -8.11 -0.08 -10.56 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.11 2.74 6.57 -52.48 -0.34 2.40 16 32 H 0.30 7.48 6.64 -40.82 -0.27 7.21 16 33 H 0.08 1.40 7.97 -51.92 -0.41 0.99 16 34 H 0.03 0.51 7.42 -51.93 -0.39 0.12 16 35 H 0.09 1.34 7.11 -51.93 -0.37 0.97 16 36 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 37 H 0.12 1.78 7.26 -51.92 -0.38 1.40 16 38 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 39 H 0.04 0.72 6.66 -51.93 -0.35 0.37 16 40 H 0.09 1.59 7.80 -51.93 -0.40 1.19 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -25.34 330.53 -8.02 -33.36 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.98 Total: 7.91 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.09 Total: -13.58 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.05 Total: -38.23 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 0.11 Total: -9.14 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.10 Total: 14.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.34 -8.02 -33.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163784928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.034 kcal (2) G-P(sol) polarization free energy of solvation -25.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds