Wall clock time and date at job start Tue Mar 31 2020 11:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38684 * 119.27503 * 2 1 4 4 C 1.38007 * 119.62221 * 179.97438 * 3 2 1 5 5 C 1.41000 * 118.28797 * 359.97438 * 4 3 2 6 6 C 1.41010 * 120.70817 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99842 * 154.74084 * 6 5 4 8 8 C 1.39950 * 120.00098 * 334.74298 * 6 5 4 9 9 N 1.30863 * 119.99902 * 334.97351 * 8 6 5 10 10 Si 1.86804 * 119.99724 * 154.97467 * 8 6 5 11 11 H 1.48500 * 109.46911 * 269.99361 * 10 8 6 12 12 H 1.48499 * 109.47428 * 29.99993 * 10 8 6 13 13 H 1.48507 * 109.46851 * 150.00284 * 10 8 6 14 14 C 1.41714 * 118.58174 * 0.27192 * 5 4 3 15 15 N 1.38093 * 119.89972 * 179.70400 * 14 5 4 16 16 C 1.39775 * 110.99935 * 114.74904 * 15 14 5 17 17 C 1.54430 * 111.77062 * 189.12983 * 16 15 14 18 18 C 1.50763 * 109.02099 * 282.58221 * 17 16 15 19 19 H 1.08996 * 108.85616 * 332.21237 * 18 17 16 20 20 F 1.39895 * 108.85329 * 213.82515 * 18 17 16 21 21 C 1.54175 * 112.60559 * 93.01956 * 18 17 16 22 22 F 1.39901 * 108.98192 * 79.12868 * 21 18 17 23 23 F 1.39905 * 108.97474 * 197.84446 * 21 18 17 24 24 C 1.53812 * 111.96947 * 318.48486 * 21 18 17 25 25 C 1.47634 * 111.00184 * 243.63432 * 15 14 5 26 26 N 1.31969 * 119.27607 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47045 * 90.00084 * 1 2 3 28 28 H 1.08998 * 109.47419 * 209.99998 * 1 2 3 29 29 H 1.09002 * 109.47016 * 330.00811 * 1 2 3 30 30 H 1.07999 * 120.18930 * 359.94859 * 3 2 1 31 31 H 1.08004 * 120.85902 * 180.02562 * 4 3 2 32 32 H 0.96999 * 119.99963 * 354.23641 * 9 8 6 33 33 H 1.09008 * 109.01613 * 309.70999 * 16 15 14 34 34 H 1.09000 * 109.02473 * 68.52838 * 16 15 14 35 35 H 1.08995 * 109.55056 * 42.44317 * 17 16 15 36 36 H 1.08999 * 109.54837 * 162.63129 * 17 16 15 37 37 H 1.09008 * 109.05018 * 79.60019 * 24 21 18 38 38 H 1.09008 * 109.05006 * 198.56570 * 24 21 18 39 39 H 1.09005 * 109.74790 * 269.99264 * 25 15 14 40 40 H 1.09007 * 109.74457 * 30.71128 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2181 0.0005 5 6 4.2409 -0.0195 0.0016 6 6 5.6501 -0.0705 0.0028 7 1 6.1588 -0.9352 0.4027 8 6 6.3895 0.9994 -0.5143 9 7 5.8563 1.7911 -1.4095 10 14 8.1374 1.2972 0.0735 11 1 8.1165 2.2038 1.2495 12 1 8.7580 0.0036 0.4567 13 1 8.9273 1.9211 -1.0184 14 6 3.4736 -1.2109 -0.0038 15 7 4.1074 -2.4378 -0.0091 16 6 3.8516 -3.1387 1.1729 17 6 4.7259 -4.4065 1.2875 18 6 4.1514 -5.4815 0.4002 19 1 3.0781 -5.3197 0.3005 20 9 4.3643 -6.7262 1.0022 21 6 4.7863 -5.4923 -1.0047 22 9 6.0280 -6.1333 -0.9380 23 9 3.9543 -6.2056 -1.8744 24 6 4.9861 -4.0707 -1.5568 25 6 3.8066 -3.1833 -1.2473 26 7 2.1523 -1.1511 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 1.6364 2.1399 -0.0008 31 1 4.1136 2.1486 0.0010 32 1 4.9814 1.5888 -1.7763 33 1 4.0563 -2.4880 2.0231 34 1 2.8010 -3.4285 1.1939 35 1 5.7435 -4.1777 0.9710 36 1 4.7345 -4.7514 2.3215 37 1 5.8826 -3.6389 -1.1118 38 1 5.1161 -4.1239 -2.6378 39 1 2.9149 -3.7933 -1.1026 40 1 3.6462 -2.4844 -2.0683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163784928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:42 Heat of formation + Delta-G solvation = -132.124004 kcal Electronic energy + Delta-G solvation = -27508.324209 eV Core-core repulsion = 23293.015467 eV Total energy + Delta-G solvation = -4215.308741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -50.45277 -48.75510 -48.15533 -41.33030 -39.19272 -36.38682 -34.79046 -33.24173 -32.50677 -31.49854 -29.35278 -27.32405 -26.18904 -25.63699 -23.75938 -22.46288 -21.89818 -21.41008 -19.84668 -18.96762 -18.66872 -18.19709 -17.60688 -17.10282 -16.79800 -16.31739 -16.14931 -15.97465 -15.59952 -15.21962 -15.00690 -14.81921 -14.70181 -14.52800 -14.44888 -14.32311 -14.18016 -13.73339 -13.43562 -13.24864 -13.12625 -12.99027 -12.94096 -12.67080 -12.52949 -12.39804 -12.26225 -11.96682 -11.92202 -11.52559 -11.41466 -11.01570 -10.33478 -10.19590 -9.49204 -9.22006 -9.08436 -6.38584 0.67000 0.89175 1.55862 1.67662 1.81963 2.19169 2.33700 2.65335 2.69064 2.91387 3.00224 3.10201 3.45467 3.50195 3.67772 3.78173 3.95242 4.14806 4.21643 4.31645 4.33568 4.39222 4.41923 4.54839 4.61021 4.69394 4.84107 4.87661 4.90972 4.92696 5.04360 5.08369 5.11369 5.23171 5.45735 5.70469 5.78254 6.03802 6.13684 6.33779 6.47542 6.85802 6.98024 7.63123 8.02003 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.005649 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.895201 B = 4955.736648 C = 6512.724684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.029 4.029 3 C -0.127 4.127 4 C -0.210 4.210 5 C 0.048 3.952 6 C -0.488 4.488 7 H 0.089 0.911 8 C 0.004 3.996 9 N -0.810 5.810 10 Si 1.113 2.887 11 H -0.267 1.267 12 H -0.256 1.256 13 H -0.276 1.276 14 C 0.156 3.844 15 N -0.474 5.474 16 C 0.088 3.912 17 C -0.133 4.133 18 C 0.065 3.935 19 H 0.114 0.886 20 F -0.205 7.205 21 C 0.270 3.730 22 F -0.198 7.198 23 F -0.202 7.202 24 C -0.144 4.144 25 C 0.086 3.914 26 N -0.488 5.488 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.284 0.716 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 -7.656 2.356 8.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.168 4.168 3 C -0.147 4.147 4 C -0.236 4.236 5 C 0.042 3.958 6 C -0.516 4.516 7 H 0.107 0.893 8 C -0.214 4.214 9 N -0.433 5.433 10 Si 0.931 3.069 11 H -0.192 1.192 12 H -0.180 1.180 13 H -0.202 1.202 14 C -0.077 4.077 15 N -0.195 5.195 16 C -0.041 4.041 17 C -0.171 4.171 18 C 0.028 3.972 19 H 0.132 0.868 20 F -0.185 7.185 21 C 0.234 3.766 22 F -0.179 7.179 23 F -0.183 7.183 24 C -0.182 4.182 25 C -0.041 4.041 26 N -0.200 5.200 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.226 -7.380 2.165 7.694 hybrid contribution -1.749 -0.366 -0.160 1.794 sum -1.975 -7.746 2.005 8.242 Atomic orbital electron populations 1.20300 0.88450 1.02129 1.01562 1.20716 0.96775 0.87677 1.11586 1.21658 0.94357 0.98630 1.00057 1.21484 0.94285 0.97340 1.10490 1.18463 0.94975 0.90948 0.91441 1.20624 0.91310 1.05173 1.34476 0.89253 1.28375 1.09772 0.90993 0.92213 1.70577 1.18600 1.35794 1.18330 0.83032 0.68919 0.78168 0.76817 1.19218 1.18005 1.20153 1.19246 0.86326 0.90000 1.12105 1.56212 1.58812 1.02189 1.02319 1.20811 0.96672 0.94249 0.92328 1.22085 1.01392 0.92405 1.01194 1.22590 1.03266 0.81337 0.89963 0.86848 1.92861 1.96597 1.44544 1.84533 1.22448 0.75036 0.89396 0.89767 1.93007 1.43934 1.84014 1.96919 1.93015 1.72392 1.80994 1.71897 1.22371 1.02482 0.89343 1.04003 1.21521 0.95289 0.95278 0.91997 1.66870 1.10978 1.30951 1.11196 0.92115 0.92360 0.90679 0.85729 0.88141 0.90348 0.91493 0.95503 0.88842 0.86621 0.86920 0.87462 0.93191 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 10.15 71.24 0.72 -1.37 16 2 C -0.03 -1.17 6.79 42.64 0.29 -0.88 16 3 C -0.13 -5.37 9.69 22.32 0.22 -5.16 16 4 C -0.21 -10.00 8.04 22.89 0.18 -9.82 16 5 C 0.05 2.34 5.33 -21.06 -0.11 2.23 16 6 C -0.49 -23.39 8.63 23.36 0.20 -23.18 16 7 H 0.09 4.19 7.68 -2.91 -0.02 4.17 16 8 C 0.00 0.18 4.98 85.25 0.42 0.60 16 9 N -0.81 -40.45 12.34 21.83 0.27 -40.18 16 10 Si 1.11 39.86 30.00 68.60 2.06 41.92 16 11 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 12 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 13 H -0.28 -9.85 7.11 99.48 0.71 -9.14 16 14 C 0.16 6.91 4.93 134.06 0.66 7.57 16 15 N -0.47 -17.62 3.12 -716.29 -2.23 -19.85 16 16 C 0.09 2.85 4.76 88.07 0.42 3.27 16 17 C -0.13 -3.43 5.40 30.35 0.16 -3.26 16 18 C 0.07 1.72 2.89 30.27 0.09 1.81 16 19 H 0.11 2.85 6.58 -2.39 -0.02 2.84 16 20 F -0.20 -5.79 16.63 44.97 0.75 -5.04 16 21 C 0.27 7.54 1.74 31.27 0.05 7.60 16 22 F -0.20 -5.90 16.69 44.97 0.75 -5.15 16 23 F -0.20 -5.91 17.02 44.97 0.77 -5.14 16 24 C -0.14 -4.05 4.85 30.16 0.15 -3.91 16 25 C 0.09 2.84 5.16 85.45 0.44 3.28 16 26 N -0.49 -21.19 9.77 -179.57 -1.75 -22.95 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.10 4.99 6.57 -2.91 -0.02 4.98 16 32 H 0.28 14.83 6.64 -92.71 -0.62 14.21 16 33 H 0.07 2.32 7.97 -2.38 -0.02 2.31 16 34 H 0.03 0.89 7.42 -2.39 -0.02 0.87 16 35 H 0.09 2.48 7.11 -2.39 -0.02 2.46 16 36 H 0.12 2.53 8.05 -2.39 -0.02 2.51 16 37 H 0.11 3.33 7.26 -2.38 -0.02 3.31 16 38 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 39 H 0.05 1.58 6.66 -2.38 -0.02 1.57 16 40 H 0.07 2.48 7.80 -2.38 -0.02 2.46 16 Total: -1.00 -54.33 330.53 5.72 -48.60 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 1.22 Total: 29.01 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.90 Total: -21.22 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -3.72 Total: -82.98 kcal Atomic # 9 Polarization: -17.60 SS G_CDS: 2.26 Total: -15.33 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.06 Total: 41.92 kcal Total: -54.33 5.72 -48.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163784928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.520 kcal (2) G-P(sol) polarization free energy of solvation -54.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds