Wall clock time and date at job start Tue Mar 31 2020 11:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31491 * 119.81302 * 2 1 4 4 C 1.32740 * 121.72637 * 180.02562 * 3 2 1 5 5 N 1.38374 * 119.42760 * 179.97438 * 4 3 2 6 6 C 1.47995 * 111.00056 * 128.72034 * 5 4 3 7 7 C 1.50446 * 112.83076 * 191.34484 * 6 5 4 8 8 C 1.54309 * 108.49389 * 93.72909 * 7 6 5 9 9 C 1.45879 * 112.18540 * 281.46537 * 8 7 6 10 10 H 1.09000 * 108.93787 * 300.42652 * 9 8 7 11 11 F 1.39903 * 108.93720 * 181.81850 * 9 8 7 12 12 C 1.54303 * 112.18750 * 61.12135 * 9 8 7 13 13 F 1.39900 * 109.63281 * 41.16431 * 12 9 8 14 14 F 1.39897 * 109.63319 * 161.55569 * 12 9 8 15 15 C 1.48000 * 111.00052 * 359.97438 * 5 4 3 16 16 C 1.39707 * 121.14495 * 0.25974 * 4 3 2 17 17 C 1.36567 * 119.48754 * 359.48600 * 16 4 3 18 18 C 1.40755 * 119.82074 * 180.02562 * 2 1 3 19 19 C 1.41211 * 120.56325 * 359.94882 * 18 2 1 20 20 H 1.07995 * 120.00139 * 24.88793 * 19 18 2 21 21 C 1.39871 * 119.99649 * 204.88511 * 19 18 2 22 22 N 1.30899 * 119.99811 * 14.70370 * 21 19 18 23 23 Si 1.86801 * 120.00035 * 194.70250 * 21 19 18 24 24 H 1.48494 * 109.47113 * 59.99847 * 23 21 19 25 25 H 1.48493 * 109.47154 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46811 * 300.00100 * 23 21 19 27 27 H 1.09002 * 109.47053 * 90.00101 * 1 2 3 28 28 H 1.08998 * 109.46602 * 209.99642 * 1 2 3 29 29 H 1.08998 * 109.47044 * 329.99239 * 1 2 3 30 30 H 1.08996 * 108.81491 * 312.21089 * 6 5 4 31 31 H 1.09007 * 108.80723 * 70.59271 * 6 5 4 32 32 H 1.09004 * 109.62773 * 334.02751 * 7 6 5 33 33 H 1.08997 * 109.63315 * 213.43699 * 7 6 5 34 34 H 1.09007 * 108.93481 * 160.77101 * 8 7 6 35 35 H 1.09000 * 108.93527 * 42.16812 * 8 7 6 36 36 H 1.09005 * 108.81605 * 323.97532 * 15 5 4 37 37 H 1.09001 * 108.73073 * 205.63889 * 15 5 4 38 38 H 1.07997 * 120.25408 * 179.72332 * 16 4 3 39 39 H 1.08002 * 120.79283 * 180.22980 * 17 16 4 40 40 H 0.97006 * 119.99915 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1266 2.4124 -0.0010 6 6 5.1386 2.4838 1.0766 7 6 5.6649 3.8767 1.2917 8 6 4.8356 4.5464 2.4075 9 6 3.5445 5.0228 1.9237 10 1 3.7108 5.7486 1.1277 11 9 2.8696 5.6519 2.9753 12 6 2.6667 3.8760 1.3802 13 9 2.7787 2.7609 2.2175 14 9 1.3317 4.2909 1.3263 15 6 3.1463 3.5211 -0.0015 16 6 4.2495 0.0143 -0.0065 17 6 3.6199 -1.1976 -0.0012 18 6 2.2070 -1.2212 -0.0005 19 6 1.5091 -2.4488 0.0000 20 1 0.5044 -2.4990 -0.3928 21 6 2.1193 -3.5998 0.5093 22 7 3.2015 -3.4987 1.2386 23 14 1.3897 -5.2812 0.1486 24 1 1.3672 -5.5065 -1.3190 25 1 2.2169 -6.3294 0.7982 26 1 0.0046 -5.3441 0.6803 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.6893 2.1306 2.0047 31 1 5.9724 1.8305 0.8195 32 1 5.5697 4.4505 0.3699 33 1 6.7119 3.8303 1.5912 34 1 5.3972 5.3909 2.8071 35 1 4.6695 3.8241 3.2067 36 1 2.2882 3.2315 -0.6083 37 1 3.6116 4.3996 -0.4486 38 1 5.3282 0.0672 -0.0113 39 1 4.1883 -2.1159 -0.0020 40 1 3.6245 -4.2969 1.5921 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164065452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:00 Heat of formation + Delta-G solvation = -102.784649 kcal Electronic energy + Delta-G solvation = -27860.955041 eV Core-core repulsion = 23646.918550 eV Total energy + Delta-G solvation = -4214.036491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -49.05411 -47.54522 -46.72874 -39.34391 -37.53826 -34.66941 -33.42210 -31.74259 -30.93098 -30.16130 -27.01271 -26.77189 -24.89232 -24.07536 -21.63602 -20.89829 -20.56731 -19.89240 -17.77296 -17.37015 -17.14411 -17.02460 -16.19595 -15.72197 -15.32781 -15.15481 -14.83086 -14.26331 -13.91782 -13.68948 -13.67383 -13.40473 -13.07740 -13.01566 -12.81089 -12.55008 -12.45464 -12.09309 -12.02990 -11.73796 -11.54855 -11.44737 -11.40711 -11.29436 -11.16696 -10.88716 -10.85931 -10.69553 -10.59047 -10.34960 -9.83408 -9.43011 -8.66839 -8.22788 -8.07318 -7.09494 -6.80644 -4.39696 2.55824 2.92987 3.01117 3.03468 3.11628 3.44278 3.84210 3.99151 4.15134 4.27678 4.33637 4.58379 4.64320 4.70683 4.94543 5.16126 5.34248 5.44015 5.52219 5.59596 5.64888 5.69944 5.82352 5.91625 6.04392 6.13581 6.26865 6.32785 6.44578 6.61479 6.68065 6.75396 6.95046 7.01568 7.24918 7.31010 7.37689 7.78370 7.97138 8.08658 8.44376 8.68431 8.75065 9.56815 10.07151 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.004204 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.771998 B = 6658.826697 C = 7183.664593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.024 3.976 3 N -0.488 5.488 4 C 0.166 3.834 5 N -0.457 5.457 6 C 0.041 3.959 7 C -0.115 4.115 8 C -0.162 4.162 9 C 0.065 3.935 10 H 0.106 0.894 11 F -0.202 7.202 12 C 0.258 3.742 13 F -0.178 7.178 14 F -0.189 7.189 15 C 0.024 3.976 16 C -0.151 4.151 17 C -0.116 4.116 18 C 0.058 3.942 19 C -0.444 4.444 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.795 5.795 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.264 1.264 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 10.942 0.035 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 N -0.200 5.200 4 C -0.064 4.064 5 N -0.176 5.176 6 C -0.085 4.085 7 C -0.153 4.153 8 C -0.200 4.200 9 C 0.028 3.972 10 H 0.123 0.877 11 F -0.182 7.182 12 C 0.219 3.781 13 F -0.159 7.159 14 F -0.170 7.170 15 C -0.105 4.105 16 C -0.173 4.173 17 C -0.142 4.142 18 C 0.053 3.947 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.145 4.145 22 N -0.420 5.420 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.189 1.189 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.148 0.852 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.601 11.617 -0.174 12.496 hybrid contribution -0.281 -1.664 0.838 1.884 sum 4.320 9.953 0.664 10.870 Atomic orbital electron populations 1.20249 0.91193 1.01189 1.00231 1.20799 0.94813 0.87547 1.08662 1.66601 1.07961 1.31154 1.14310 1.18684 0.88592 0.88076 1.11018 1.59305 1.14229 1.00518 1.43562 1.22241 0.95406 0.96834 0.94048 1.21387 0.99549 0.96255 0.98090 1.21249 0.94448 1.03216 1.01068 1.21645 0.92247 0.94260 0.89056 0.87660 1.92886 1.82068 1.83596 1.59683 1.22033 0.79498 0.83176 0.93385 1.93020 1.95454 1.53971 1.73413 1.93020 1.36545 1.90410 1.97058 1.22728 0.98974 0.95938 0.92885 1.20783 0.98254 0.92457 1.05797 1.21349 0.94849 0.96429 1.01552 1.18276 0.92376 0.93067 0.90981 1.19483 1.01396 0.91905 1.34571 0.89847 1.25959 0.94382 1.01606 0.92582 1.69802 1.17115 1.31857 1.23244 0.86288 0.79905 0.80266 0.79888 1.18746 1.20302 1.18861 0.93415 0.91423 0.93360 0.92284 0.90059 0.90152 0.89589 0.89382 0.89576 0.86144 0.89226 0.88269 0.85199 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 9.58 36.01 0.34 -1.17 16 2 C 0.02 0.59 6.86 -81.79 -0.56 0.02 16 3 N -0.49 -11.57 7.53 -8.04 -0.06 -11.64 16 4 C 0.17 3.69 5.54 -155.12 -0.86 2.83 16 5 N -0.46 -8.16 4.70 -174.29 -0.82 -8.98 16 6 C 0.04 0.61 4.36 -4.50 -0.02 0.59 16 7 C -0.11 -1.22 5.63 -27.32 -0.15 -1.38 16 8 C -0.16 -1.81 4.86 -29.42 -0.14 -1.95 16 9 C 0.07 0.84 3.12 -29.42 -0.09 0.75 16 10 H 0.11 1.03 7.52 -51.93 -0.39 0.64 16 11 F -0.20 -3.02 16.68 2.25 0.04 -2.99 16 12 C 0.26 4.32 1.87 -27.30 -0.05 4.27 16 13 F -0.18 -3.62 12.01 2.25 0.03 -3.59 16 14 F -0.19 -3.49 16.70 2.25 0.04 -3.46 16 15 C 0.02 0.39 4.55 -4.47 -0.02 0.37 16 16 C -0.15 -3.43 9.18 -39.64 -0.36 -3.80 16 17 C -0.12 -2.91 8.73 -39.02 -0.34 -3.25 16 18 C 0.06 1.49 5.59 -106.65 -0.60 0.90 16 19 C -0.44 -11.19 8.16 -37.84 -0.31 -11.50 16 20 H 0.08 2.00 6.83 -52.49 -0.36 1.64 16 21 C 0.07 1.74 5.22 -17.34 -0.09 1.65 16 22 N -0.79 -19.73 10.83 55.54 0.60 -19.13 16 23 Si 0.91 17.97 29.58 -169.99 -5.03 12.94 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.42 6.75 -51.93 -0.35 1.07 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.03 5.32 -51.93 -0.28 0.76 16 31 H 0.08 1.18 7.09 -51.93 -0.37 0.81 16 32 H 0.08 0.78 7.07 -51.93 -0.37 0.41 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.11 6.94 -51.93 -0.36 0.75 16 36 H 0.12 2.23 6.71 -51.93 -0.35 1.88 16 37 H 0.09 1.10 6.58 -51.93 -0.34 0.76 16 38 H 0.10 2.01 7.05 -52.49 -0.37 1.64 16 39 H 0.13 3.32 6.17 -52.49 -0.32 3.00 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -28.63 317.49 -8.35 -36.99 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.68 Total: 6.72 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.25 Total: -11.66 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.28 Total: -39.74 kcal Atomic # 9 Polarization: -10.13 SS G_CDS: 0.10 Total: -10.03 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.63 -8.35 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164065452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.798 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds