Wall clock time and date at job start Tue Mar 31 2020 11:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31491 * 119.81302 * 2 1 4 4 C 1.32740 * 121.72637 * 180.02562 * 3 2 1 5 5 N 1.38374 * 119.42760 * 179.97438 * 4 3 2 6 6 C 1.47995 * 111.00056 * 128.72034 * 5 4 3 7 7 C 1.50446 * 112.83076 * 191.34484 * 6 5 4 8 8 C 1.54309 * 108.49389 * 93.72909 * 7 6 5 9 9 C 1.45879 * 112.18540 * 281.46537 * 8 7 6 10 10 H 1.09000 * 108.93787 * 300.42652 * 9 8 7 11 11 F 1.39903 * 108.93720 * 181.81850 * 9 8 7 12 12 C 1.54303 * 112.18750 * 61.12135 * 9 8 7 13 13 F 1.39900 * 109.63281 * 41.16431 * 12 9 8 14 14 F 1.39897 * 109.63319 * 161.55569 * 12 9 8 15 15 C 1.48000 * 111.00052 * 359.97438 * 5 4 3 16 16 C 1.39707 * 121.14495 * 0.25974 * 4 3 2 17 17 C 1.36567 * 119.48754 * 359.48600 * 16 4 3 18 18 C 1.40755 * 119.82074 * 180.02562 * 2 1 3 19 19 C 1.41211 * 120.56325 * 359.94882 * 18 2 1 20 20 H 1.07995 * 120.00139 * 24.88793 * 19 18 2 21 21 C 1.39871 * 119.99649 * 204.88511 * 19 18 2 22 22 N 1.30899 * 119.99811 * 14.70370 * 21 19 18 23 23 Si 1.86801 * 120.00035 * 194.70250 * 21 19 18 24 24 H 1.48494 * 109.47113 * 59.99847 * 23 21 19 25 25 H 1.48493 * 109.47154 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46811 * 300.00100 * 23 21 19 27 27 H 1.09002 * 109.47053 * 90.00101 * 1 2 3 28 28 H 1.08998 * 109.46602 * 209.99642 * 1 2 3 29 29 H 1.08998 * 109.47044 * 329.99239 * 1 2 3 30 30 H 1.08996 * 108.81491 * 312.21089 * 6 5 4 31 31 H 1.09007 * 108.80723 * 70.59271 * 6 5 4 32 32 H 1.09004 * 109.62773 * 334.02751 * 7 6 5 33 33 H 1.08997 * 109.63315 * 213.43699 * 7 6 5 34 34 H 1.09007 * 108.93481 * 160.77101 * 8 7 6 35 35 H 1.09000 * 108.93527 * 42.16812 * 8 7 6 36 36 H 1.09005 * 108.81605 * 323.97532 * 15 5 4 37 37 H 1.09001 * 108.73073 * 205.63889 * 15 5 4 38 38 H 1.07997 * 120.25408 * 179.72332 * 16 4 3 39 39 H 1.08002 * 120.79283 * 180.22980 * 17 16 4 40 40 H 0.97006 * 119.99915 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1266 2.4124 -0.0010 6 6 5.1386 2.4838 1.0766 7 6 5.6649 3.8767 1.2917 8 6 4.8356 4.5464 2.4075 9 6 3.5445 5.0228 1.9237 10 1 3.7108 5.7486 1.1277 11 9 2.8696 5.6519 2.9753 12 6 2.6667 3.8760 1.3802 13 9 2.7787 2.7609 2.2175 14 9 1.3317 4.2909 1.3263 15 6 3.1463 3.5211 -0.0015 16 6 4.2495 0.0143 -0.0065 17 6 3.6199 -1.1976 -0.0012 18 6 2.2070 -1.2212 -0.0005 19 6 1.5091 -2.4488 0.0000 20 1 0.5044 -2.4990 -0.3928 21 6 2.1193 -3.5998 0.5093 22 7 3.2015 -3.4987 1.2386 23 14 1.3897 -5.2812 0.1486 24 1 1.3672 -5.5065 -1.3190 25 1 2.2169 -6.3294 0.7982 26 1 0.0046 -5.3441 0.6803 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.6893 2.1306 2.0047 31 1 5.9724 1.8305 0.8195 32 1 5.5697 4.4505 0.3699 33 1 6.7119 3.8303 1.5912 34 1 5.3972 5.3909 2.8071 35 1 4.6695 3.8241 3.2067 36 1 2.2882 3.2315 -0.6083 37 1 3.6116 4.3996 -0.4486 38 1 5.3282 0.0672 -0.0113 39 1 4.1883 -2.1159 -0.0020 40 1 3.6245 -4.2969 1.5921 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164065452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:57 Heat of formation + Delta-G solvation = -118.529399 kcal Electronic energy + Delta-G solvation = -27861.637785 eV Core-core repulsion = 23646.918550 eV Total energy + Delta-G solvation = -4214.719235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -50.36996 -48.71008 -48.14405 -40.96667 -38.96627 -36.18569 -34.98128 -33.33066 -32.30130 -31.90372 -28.75797 -28.16365 -26.11732 -25.71283 -23.22777 -22.30398 -21.95516 -21.33666 -19.19152 -19.05390 -18.35786 -18.34530 -17.68810 -17.32159 -16.59277 -16.56135 -16.28592 -15.60974 -15.33637 -15.15959 -15.03163 -14.86544 -14.66285 -14.47974 -14.18903 -13.90873 -13.85187 -13.70484 -13.59203 -13.33885 -13.03262 -12.91795 -12.83476 -12.73752 -12.52793 -12.30971 -12.24584 -12.12860 -11.72748 -11.62741 -11.48832 -11.18571 -10.31531 -10.03463 -9.90915 -8.86210 -8.58784 -6.27967 0.76830 1.06446 1.39388 1.49611 1.52902 2.19631 2.31469 2.53257 2.84455 3.01099 3.13363 3.29380 3.53711 3.67297 3.77849 3.85092 4.03465 4.12650 4.35943 4.42503 4.44973 4.52260 4.62820 4.70818 4.73400 4.81467 4.87947 4.94795 4.95404 5.00101 5.12193 5.14554 5.23161 5.30596 5.48072 5.53804 5.77081 5.92822 6.17997 6.30693 6.60231 6.82713 6.90117 7.72501 8.30182 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.004204 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.771998 B = 6658.826697 C = 7183.664593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.001 4.001 3 N -0.498 5.498 4 C 0.176 3.824 5 N -0.456 5.456 6 C 0.040 3.960 7 C -0.104 4.104 8 C -0.160 4.160 9 C 0.070 3.930 10 H 0.150 0.850 11 F -0.215 7.215 12 C 0.240 3.760 13 F -0.206 7.206 14 F -0.205 7.205 15 C 0.025 3.975 16 C -0.160 4.160 17 C -0.133 4.133 18 C 0.025 3.975 19 C -0.474 4.474 20 H 0.086 0.914 21 C 0.033 3.967 22 N -0.828 5.828 23 Si 0.984 3.016 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.259 1.259 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 12.722 -0.447 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.141 4.141 3 N -0.211 5.211 4 C -0.055 4.055 5 N -0.175 5.175 6 C -0.085 4.085 7 C -0.141 4.141 8 C -0.197 4.197 9 C 0.034 3.966 10 H 0.168 0.832 11 F -0.195 7.195 12 C 0.202 3.798 13 F -0.187 7.187 14 F -0.186 7.186 15 C -0.104 4.104 16 C -0.182 4.182 17 C -0.159 4.159 18 C 0.020 3.980 19 C -0.504 4.504 20 H 0.104 0.896 21 C -0.181 4.181 22 N -0.454 5.454 23 Si 0.805 3.195 24 H -0.183 1.183 25 H -0.194 1.194 26 H -0.184 1.184 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.971 13.419 -0.651 14.702 hybrid contribution -0.636 -2.063 0.988 2.374 sum 5.335 11.356 0.337 12.551 Atomic orbital electron populations 1.20197 0.89509 1.01105 1.01164 1.21283 0.96352 0.87676 1.08816 1.66748 1.08771 1.30694 1.14926 1.19164 0.88319 0.89913 1.08130 1.59271 1.14372 0.99123 1.44710 1.22364 0.94192 1.00397 0.91550 1.21411 1.00726 0.93009 0.98946 1.21278 0.93963 1.03899 1.00580 1.21878 0.91452 0.93396 0.89883 0.83216 1.92864 1.82532 1.83622 1.60529 1.22666 0.79517 0.84008 0.93650 1.92969 1.95573 1.55876 1.74296 1.92980 1.38001 1.90484 1.97131 1.22842 0.98190 0.96898 0.92487 1.21030 0.99535 0.92117 1.05507 1.21379 0.94952 0.96938 1.02674 1.18612 0.93031 0.94022 0.92295 1.19703 1.01919 0.92705 1.36037 0.89605 1.26787 0.94610 1.04991 0.91748 1.69860 1.18397 1.33130 1.24043 0.85208 0.79152 0.75442 0.79711 1.18340 1.19421 1.18369 0.91884 0.91654 0.93092 0.95231 0.89640 0.87882 0.86451 0.85809 0.92068 0.88867 0.84200 0.85991 0.86400 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.73 9.58 71.24 0.68 -2.05 16 2 C 0.00 -0.03 6.86 43.23 0.30 0.27 16 3 N -0.50 -24.17 7.53 -179.36 -1.35 -25.52 16 4 C 0.18 7.87 5.54 133.31 0.74 8.60 16 5 N -0.46 -15.56 4.70 -705.34 -3.31 -18.87 16 6 C 0.04 1.14 4.36 85.27 0.37 1.51 16 7 C -0.10 -1.73 5.63 30.21 0.17 -1.56 16 8 C -0.16 -2.97 4.86 28.85 0.14 -2.83 16 9 C 0.07 1.58 3.12 28.85 0.09 1.67 16 10 H 0.15 2.07 7.52 -2.39 -0.02 2.05 16 11 F -0.21 -5.95 16.68 44.97 0.75 -5.20 16 12 C 0.24 7.74 1.87 30.23 0.06 7.79 16 13 F -0.21 -8.50 12.01 44.97 0.54 -7.96 16 14 F -0.20 -7.50 16.70 44.97 0.75 -6.75 16 15 C 0.02 0.75 4.55 85.28 0.39 1.14 16 16 C -0.16 -7.42 9.18 22.23 0.20 -7.21 16 17 C -0.13 -6.96 8.73 22.64 0.20 -6.76 16 18 C 0.02 1.35 5.59 -21.18 -0.12 1.23 16 19 C -0.47 -24.78 8.16 23.40 0.19 -24.58 16 20 H 0.09 4.26 6.83 -2.91 -0.02 4.24 16 21 C 0.03 1.63 5.22 85.23 0.45 2.08 16 22 N -0.83 -42.42 10.83 21.82 0.24 -42.19 16 23 Si 0.98 37.27 29.58 68.60 2.03 39.30 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 26 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 2.85 6.75 -2.39 -0.02 2.83 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.03 1.02 5.32 -2.39 -0.01 1.01 16 31 H 0.09 2.30 7.09 -2.38 -0.02 2.29 16 32 H 0.10 1.34 7.07 -2.38 -0.02 1.32 16 33 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.06 1.48 6.94 -2.39 -0.02 1.46 16 36 H 0.09 3.39 6.71 -2.38 -0.02 3.37 16 37 H 0.14 2.79 6.58 -2.39 -0.02 2.78 16 38 H 0.12 4.93 7.05 -2.91 -0.02 4.91 16 39 H 0.12 6.33 6.17 -2.91 -0.02 6.31 16 40 H 0.29 13.42 8.30 -92.70 -0.77 12.65 16 Total: -1.00 -66.55 317.49 4.58 -61.97 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 1.09 Total: 25.92 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.85 Total: -20.70 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -4.43 Total: -86.58 kcal Atomic # 9 Polarization: -21.94 SS G_CDS: 2.04 Total: -19.90 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.30 kcal Total: -66.55 4.58 -61.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164065452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.564 kcal (2) G-P(sol) polarization free energy of solvation -66.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds