Wall clock time and date at job start Tue Mar 31 2020 11:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38339 * 120.74867 * 2 1 4 4 C 1.39097 * 119.09721 * 179.97438 * 3 2 1 5 5 N 1.39003 * 119.70551 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99819 * 359.72303 * 5 4 3 7 7 H 1.09004 * 109.41774 * 325.27774 * 6 5 4 8 8 C 1.52951 * 109.41524 * 85.13772 * 6 5 4 9 9 C 1.53242 * 109.40159 * 183.77418 * 8 6 5 10 10 C 1.51269 * 108.48359 * 305.26158 * 9 8 6 11 11 C 1.37870 * 120.85160 * 231.36388 * 10 9 8 12 12 N 1.31520 * 119.99804 * 180.02562 * 11 10 9 13 13 Si 1.86800 * 120.00315 * 0.02918 * 11 10 9 14 14 H 1.48498 * 109.47370 * 59.99247 * 13 11 10 15 15 H 1.48490 * 109.47371 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46622 * 299.99830 * 13 11 10 17 17 C 1.51273 * 118.29469 * 51.39010 * 10 9 8 18 18 C 1.52963 * 109.41419 * 205.42052 * 6 5 4 19 19 N 1.32427 * 120.58685 * 0.25860 * 4 3 2 20 20 C 1.31932 * 121.62640 * 359.47143 * 19 4 3 21 21 C 1.38067 * 120.85319 * 0.52761 * 20 19 4 22 22 C 1.50701 * 120.33596 * 179.71752 * 21 20 19 23 23 F 1.39899 * 109.47201 * 0.02822 * 22 21 20 24 24 F 1.39910 * 109.47119 * 120.02492 * 22 21 20 25 25 F 1.39899 * 109.47369 * 240.01973 * 22 21 20 26 26 H 1.09001 * 109.47159 * 89.99827 * 1 2 3 27 27 H 1.08999 * 109.47317 * 210.00087 * 1 2 3 28 28 H 1.09002 * 109.46696 * 329.99685 * 1 2 3 29 29 H 1.08003 * 120.45109 * 359.95613 * 3 2 1 30 30 H 0.97001 * 120.00330 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.48442 * 303.68306 * 8 6 5 32 32 H 1.09000 * 109.48236 * 63.72176 * 8 6 5 33 33 H 1.08999 * 109.61934 * 185.58284 * 9 8 6 34 34 H 1.09003 * 109.84413 * 65.08041 * 9 8 6 35 35 H 0.97001 * 119.99386 * 180.02562 * 12 11 10 36 36 H 1.08997 * 109.62203 * 188.93310 * 17 10 9 37 37 H 1.09001 * 109.78626 * 68.46388 * 17 10 9 38 38 H 1.08996 * 109.47839 * 296.27527 * 18 6 5 39 39 H 1.09000 * 109.47990 * 56.31601 * 18 6 5 40 40 H 1.07997 * 119.57674 * 180.25090 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2144 1.1889 0.0000 4 6 3.6048 1.1488 0.0005 5 7 4.3281 2.3358 0.0000 6 6 3.6258 3.6215 -0.0073 7 1 2.7132 3.5326 -0.5967 8 6 3.2683 4.0137 1.4273 9 6 2.4519 5.3104 1.4121 10 6 3.2351 6.3614 0.6568 11 6 3.4633 7.6046 1.2074 12 7 4.1460 8.5060 0.5357 13 14 2.8029 8.0089 2.9073 14 1 3.3790 7.0660 3.8994 15 1 3.1817 9.3986 3.2680 16 1 1.3232 7.8831 2.9062 17 6 3.7610 6.0134 -0.7182 18 6 4.5284 4.6904 -0.6259 19 7 4.2455 -0.0101 -0.0041 20 6 3.5971 -1.1591 0.0010 21 6 2.2168 -1.1933 0.0005 22 6 1.4881 -2.5124 0.0000 23 9 2.4171 -3.5584 0.0007 24 9 0.6844 -2.6016 1.1418 25 9 0.6860 -2.6016 -1.1428 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6940 2.1353 -0.0007 30 1 5.2978 2.3129 0.0000 31 1 2.6786 3.2194 1.8851 32 1 4.1825 4.1650 2.0013 33 1 2.2798 5.6465 2.4345 34 1 1.4959 5.1400 0.9170 35 1 4.3068 9.3805 0.9232 36 1 4.4300 6.8013 -1.0644 37 1 2.9297 5.9067 -1.4151 38 1 5.4120 4.8253 -0.0022 39 1 4.8324 4.3760 -1.6243 40 1 4.1531 -2.0850 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:25 Heat of formation + Delta-G solvation = -133.911573 kcal Electronic energy + Delta-G solvation = -26342.601908 eV Core-core repulsion = 22127.215652 eV Total energy + Delta-G solvation = -4215.386256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.23375 -47.76216 -47.65237 -40.48985 -37.77837 -34.95162 -33.85256 -32.03663 -30.56015 -29.77829 -28.06163 -27.41220 -25.33372 -23.15393 -22.36974 -21.53126 -21.23661 -19.64814 -18.61353 -18.53351 -18.20012 -17.16035 -16.60041 -16.13687 -14.92909 -14.87618 -14.65478 -14.56417 -14.36936 -14.33089 -14.14344 -13.89136 -13.83968 -13.74061 -13.45049 -13.15308 -12.91687 -12.79314 -12.51975 -12.39455 -12.19028 -11.80147 -11.57133 -11.24788 -11.05320 -10.79430 -10.43415 -10.32715 -10.08895 -9.78426 -9.59898 -9.55626 -9.12414 -8.85685 -8.59414 -7.71922 -6.22404 -4.14819 1.02320 1.20684 2.64969 3.18967 3.23678 3.28839 3.29107 3.64505 3.78237 3.99876 4.28217 4.41448 4.46784 4.54684 4.89341 5.05202 5.13956 5.27169 5.39711 5.41067 5.61860 5.63830 5.73445 5.83958 5.91105 6.05549 6.27713 6.34997 6.39932 6.53203 6.66148 6.67249 6.83843 6.89283 7.17003 7.23371 7.50426 7.55044 7.61521 7.73363 8.11499 8.23170 8.82767 9.41794 10.87057 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.003082 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.735962 B = 9083.376800 C = 9529.091508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.049 3.951 3 C -0.243 4.243 4 C 0.438 3.562 5 N -0.702 5.702 6 C 0.157 3.843 7 H 0.075 0.925 8 C -0.120 4.120 9 C -0.008 4.008 10 C -0.495 4.495 11 C 0.079 3.921 12 N -0.887 5.887 13 Si 0.891 3.109 14 H -0.274 1.274 15 H -0.291 1.291 16 H -0.274 1.274 17 C 0.014 3.986 18 C -0.114 4.114 19 N -0.554 5.554 20 C 0.209 3.791 21 C -0.325 4.325 22 C 0.524 3.476 23 F -0.181 7.181 24 F -0.180 7.180 25 F -0.181 7.181 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.404 0.596 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.062 0.938 37 H 0.006 0.994 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 -18.027 -1.308 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 C -0.268 4.268 4 C 0.200 3.800 5 N -0.327 5.327 6 C 0.053 3.947 7 H 0.093 0.907 8 C -0.159 4.159 9 C -0.046 4.046 10 C -0.514 4.514 11 C -0.125 4.125 12 N -0.524 5.524 13 Si 0.719 3.281 14 H -0.200 1.200 15 H -0.218 1.218 16 H -0.199 1.199 17 C -0.024 4.024 18 C -0.153 4.153 19 N -0.272 5.272 20 C 0.047 3.953 21 C -0.333 4.333 22 C 0.470 3.530 23 F -0.163 7.163 24 F -0.162 7.162 25 F -0.162 7.162 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.164 0.836 30 H 0.239 0.761 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.593 -17.561 -1.317 17.973 hybrid contribution -0.830 0.030 1.010 1.308 sum -4.423 -17.531 -0.307 18.083 Atomic orbital electron populations 1.21112 0.89895 1.04414 1.03728 1.19688 0.96443 0.90983 0.88724 1.21382 0.93026 0.99116 1.13321 1.18672 0.88617 0.86568 0.86099 1.45407 1.09223 1.02545 1.75547 1.21256 0.95742 0.79839 0.97821 0.90654 1.22044 1.00629 0.98415 0.94802 1.19598 0.95415 0.92972 0.96646 1.19984 1.33530 0.96528 1.01340 1.24838 0.94422 0.95723 0.97483 1.69814 1.38986 1.05597 1.38017 0.86655 0.79721 0.77109 0.84604 1.19969 1.21757 1.19920 1.19332 0.95515 0.91784 0.95729 1.21943 0.98767 0.96937 0.97633 1.67400 1.39716 0.97005 1.23044 1.22198 0.89440 0.95854 0.87763 1.20370 0.96227 0.91999 1.24659 1.18007 0.76867 0.84706 0.73462 1.93134 1.65846 1.61015 1.96280 1.93164 1.74902 1.96608 1.51507 1.93194 1.75003 1.96727 1.51275 0.89576 0.90499 0.89914 0.83614 0.76081 0.94482 0.92423 0.95414 0.96183 0.92354 0.91924 0.97513 0.92416 0.94308 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.11 36.01 0.33 -1.03 16 2 C 0.05 0.62 5.88 -104.36 -0.61 0.00 16 3 C -0.24 -3.40 8.52 -39.23 -0.33 -3.74 16 4 C 0.44 6.59 7.63 -155.01 -1.18 5.41 16 5 N -0.70 -10.66 5.24 -53.98 -0.28 -10.94 16 6 C 0.16 2.66 2.04 -67.98 -0.14 2.52 16 7 H 0.08 1.27 6.44 -51.93 -0.33 0.94 16 8 C -0.12 -2.21 5.42 -26.63 -0.14 -2.36 16 9 C -0.01 -0.17 5.60 -27.48 -0.15 -0.33 16 10 C -0.49 -12.09 5.51 -98.92 -0.55 -12.64 16 11 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 12 N -0.89 -24.37 12.73 55.43 0.71 -23.66 16 13 Si 0.89 20.34 26.80 -169.99 -4.56 15.78 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 18 C -0.11 -2.15 5.40 -26.63 -0.14 -2.30 16 19 N -0.55 -8.11 10.39 -12.44 -0.13 -8.24 16 20 C 0.21 2.64 10.59 -17.57 -0.19 2.45 16 21 C -0.32 -4.03 5.38 -104.46 -0.56 -4.59 16 22 C 0.52 5.96 2.82 36.01 0.10 6.06 16 23 F -0.18 -1.98 15.99 2.25 0.04 -1.94 16 24 F -0.18 -2.08 15.44 2.25 0.03 -2.05 16 25 F -0.18 -2.07 16.54 2.25 0.04 -2.03 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.75 5.70 -51.93 -0.30 0.46 16 28 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.15 2.01 6.13 -52.48 -0.32 1.68 16 30 H 0.40 5.80 8.72 -40.82 -0.36 5.44 16 31 H 0.04 0.63 7.72 -51.93 -0.40 0.23 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.03 0.59 5.17 -51.93 -0.27 0.33 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 37 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.16 1.64 7.15 -52.49 -0.38 1.26 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -26.23 329.14 -7.84 -34.07 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.81 Total: 2.47 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -3.84 Total: -8.43 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.29 Total: -42.84 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.02 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.56 Total: 15.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.23 -7.84 -34.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.842 kcal (2) G-P(sol) polarization free energy of solvation -26.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds