Wall clock time and date at job start Tue Mar 31 2020 11:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38339 * 120.74867 * 2 1 4 4 C 1.39097 * 119.09721 * 179.97438 * 3 2 1 5 5 N 1.39003 * 119.70551 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99819 * 359.72303 * 5 4 3 7 7 H 1.09004 * 109.41774 * 325.27774 * 6 5 4 8 8 C 1.52951 * 109.41524 * 85.13772 * 6 5 4 9 9 C 1.53242 * 109.40159 * 183.77418 * 8 6 5 10 10 C 1.51269 * 108.48359 * 305.26158 * 9 8 6 11 11 C 1.37870 * 120.85160 * 231.36388 * 10 9 8 12 12 N 1.31520 * 119.99804 * 180.02562 * 11 10 9 13 13 Si 1.86800 * 120.00315 * 0.02918 * 11 10 9 14 14 H 1.48498 * 109.47370 * 59.99247 * 13 11 10 15 15 H 1.48490 * 109.47371 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46622 * 299.99830 * 13 11 10 17 17 C 1.51273 * 118.29469 * 51.39010 * 10 9 8 18 18 C 1.52963 * 109.41419 * 205.42052 * 6 5 4 19 19 N 1.32427 * 120.58685 * 0.25860 * 4 3 2 20 20 C 1.31932 * 121.62640 * 359.47143 * 19 4 3 21 21 C 1.38067 * 120.85319 * 0.52761 * 20 19 4 22 22 C 1.50701 * 120.33596 * 179.71752 * 21 20 19 23 23 F 1.39899 * 109.47201 * 0.02822 * 22 21 20 24 24 F 1.39910 * 109.47119 * 120.02492 * 22 21 20 25 25 F 1.39899 * 109.47369 * 240.01973 * 22 21 20 26 26 H 1.09001 * 109.47159 * 89.99827 * 1 2 3 27 27 H 1.08999 * 109.47317 * 210.00087 * 1 2 3 28 28 H 1.09002 * 109.46696 * 329.99685 * 1 2 3 29 29 H 1.08003 * 120.45109 * 359.95613 * 3 2 1 30 30 H 0.97001 * 120.00330 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.48442 * 303.68306 * 8 6 5 32 32 H 1.09000 * 109.48236 * 63.72176 * 8 6 5 33 33 H 1.08999 * 109.61934 * 185.58284 * 9 8 6 34 34 H 1.09003 * 109.84413 * 65.08041 * 9 8 6 35 35 H 0.97001 * 119.99386 * 180.02562 * 12 11 10 36 36 H 1.08997 * 109.62203 * 188.93310 * 17 10 9 37 37 H 1.09001 * 109.78626 * 68.46388 * 17 10 9 38 38 H 1.08996 * 109.47839 * 296.27527 * 18 6 5 39 39 H 1.09000 * 109.47990 * 56.31601 * 18 6 5 40 40 H 1.07997 * 119.57674 * 180.25090 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2144 1.1889 0.0000 4 6 3.6048 1.1488 0.0005 5 7 4.3281 2.3358 0.0000 6 6 3.6258 3.6215 -0.0073 7 1 2.7132 3.5326 -0.5967 8 6 3.2683 4.0137 1.4273 9 6 2.4519 5.3104 1.4121 10 6 3.2351 6.3614 0.6568 11 6 3.4633 7.6046 1.2074 12 7 4.1460 8.5060 0.5357 13 14 2.8029 8.0089 2.9073 14 1 3.3790 7.0660 3.8994 15 1 3.1817 9.3986 3.2680 16 1 1.3232 7.8831 2.9062 17 6 3.7610 6.0134 -0.7182 18 6 4.5284 4.6904 -0.6259 19 7 4.2455 -0.0101 -0.0041 20 6 3.5971 -1.1591 0.0010 21 6 2.2168 -1.1933 0.0005 22 6 1.4881 -2.5124 0.0000 23 9 2.4171 -3.5584 0.0007 24 9 0.6844 -2.6016 1.1418 25 9 0.6860 -2.6016 -1.1428 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6940 2.1353 -0.0007 30 1 5.2978 2.3129 0.0000 31 1 2.6786 3.2194 1.8851 32 1 4.1825 4.1650 2.0013 33 1 2.2798 5.6465 2.4345 34 1 1.4959 5.1400 0.9170 35 1 4.3068 9.3805 0.9232 36 1 4.4300 6.8013 -1.0644 37 1 2.9297 5.9067 -1.4151 38 1 5.4120 4.8253 -0.0022 39 1 4.8324 4.3760 -1.6243 40 1 4.1531 -2.0850 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:24 Heat of formation + Delta-G solvation = -146.646281 kcal Electronic energy + Delta-G solvation = -26343.154126 eV Core-core repulsion = 22127.215652 eV Total energy + Delta-G solvation = -4215.938474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -51.12768 -48.64572 -48.55078 -41.54901 -39.20702 -36.28769 -35.01479 -33.64917 -31.87064 -31.30783 -29.08128 -28.84564 -26.42160 -24.29740 -23.82629 -23.09809 -22.40631 -21.17422 -19.57239 -19.42757 -19.14598 -18.40955 -17.79826 -17.63825 -16.43980 -16.03862 -15.84386 -15.81113 -15.40118 -15.30040 -15.05831 -14.95939 -14.78897 -14.72884 -14.72484 -14.51789 -14.25857 -14.00105 -13.87487 -13.71164 -13.40284 -13.26814 -12.81137 -12.73837 -12.54851 -12.48292 -11.99900 -11.90904 -11.66841 -11.27078 -10.89197 -10.64200 -10.59072 -10.56169 -10.52849 -8.87384 -8.17797 -6.11627 -0.00379 0.20594 1.39753 1.41874 1.48615 1.71986 2.06388 2.40258 2.60832 2.84265 3.08824 3.11775 3.49935 3.50872 3.63966 3.85378 3.98331 4.11705 4.19177 4.39539 4.43311 4.66381 4.68364 4.69656 4.75208 4.87588 4.92769 4.94581 5.05171 5.09950 5.17416 5.22088 5.26163 5.45133 5.57783 5.63545 5.75214 5.82473 5.96214 6.32577 6.52848 6.95469 7.02626 7.46871 8.93025 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.003082 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.735962 B = 9083.376800 C = 9529.091508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.050 3.950 3 C -0.254 4.254 4 C 0.425 3.575 5 N -0.703 5.703 6 C 0.173 3.827 7 H 0.082 0.918 8 C -0.112 4.112 9 C -0.012 4.012 10 C -0.499 4.499 11 C 0.024 3.976 12 N -0.930 5.930 13 Si 0.939 3.061 14 H -0.268 1.268 15 H -0.297 1.297 16 H -0.265 1.265 17 C 0.010 3.990 18 C -0.103 4.103 19 N -0.568 5.568 20 C 0.205 3.795 21 C -0.325 4.325 22 C 0.531 3.469 23 F -0.177 7.177 24 F -0.180 7.180 25 F -0.180 7.180 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.407 0.593 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.028 0.972 37 H 0.008 0.992 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 -20.459 -0.867 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 C -0.279 4.279 4 C 0.188 3.812 5 N -0.330 5.330 6 C 0.069 3.931 7 H 0.100 0.900 8 C -0.151 4.151 9 C -0.050 4.050 10 C -0.519 4.519 11 C -0.174 4.174 12 N -0.570 5.570 13 Si 0.766 3.234 14 H -0.193 1.193 15 H -0.224 1.224 16 H -0.190 1.190 17 C -0.028 4.028 18 C -0.142 4.142 19 N -0.286 5.286 20 C 0.044 3.956 21 C -0.332 4.332 22 C 0.476 3.524 23 F -0.159 7.159 24 F -0.161 7.161 25 F -0.161 7.161 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.166 0.834 30 H 0.243 0.757 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.818 -20.044 -0.870 20.633 hybrid contribution -0.495 0.653 0.805 1.149 sum -5.313 -19.390 -0.065 20.105 Atomic orbital electron populations 1.21189 0.88126 1.05115 1.04690 1.19991 0.97759 0.90562 0.87460 1.21455 0.92688 0.99751 1.13985 1.18784 0.89047 0.86514 0.86811 1.45076 1.09224 1.02026 1.76640 1.20872 0.95462 0.80121 0.96668 0.90041 1.21907 0.99844 0.97477 0.95857 1.19635 0.95883 0.93364 0.96085 1.20636 1.32387 0.96915 1.01935 1.25556 0.95264 0.96107 1.00477 1.69954 1.41492 1.05986 1.39594 0.85864 0.79604 0.76535 0.81395 1.19318 1.22435 1.18965 1.19284 0.95275 0.93008 0.95188 1.21711 0.98134 0.95586 0.98766 1.67392 1.40319 0.97382 1.23544 1.22601 0.89891 0.96064 0.87001 1.20538 0.96346 0.92548 1.23805 1.17818 0.76800 0.84341 0.73459 1.93146 1.65710 1.60757 1.96258 1.93169 1.74875 1.96587 1.51512 1.93200 1.74955 1.96701 1.51237 0.88365 0.90117 0.88918 0.83438 0.75741 0.92525 0.93638 0.95631 0.94966 0.92843 0.95295 0.97404 0.93405 0.92579 0.79701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.11 71.24 0.65 -1.67 16 2 C 0.05 1.12 5.88 -19.69 -0.12 1.00 16 3 C -0.25 -6.48 8.52 22.50 0.19 -6.29 16 4 C 0.43 11.91 7.63 133.05 1.02 12.93 16 5 N -0.70 -20.11 5.24 -324.69 -1.70 -21.81 16 6 C 0.17 5.57 2.04 44.96 0.09 5.66 16 7 H 0.08 2.57 6.44 -2.38 -0.02 2.55 16 8 C -0.11 -3.92 5.42 30.66 0.17 -3.75 16 9 C -0.01 -0.47 5.60 30.11 0.17 -0.30 16 10 C -0.50 -24.41 5.51 -16.17 -0.09 -24.50 16 11 C 0.02 1.29 5.46 84.65 0.46 1.75 16 12 N -0.93 -52.79 12.73 21.45 0.27 -52.52 16 13 Si 0.94 41.84 26.80 68.60 1.84 43.68 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 17 C 0.01 0.48 5.97 30.11 0.18 0.66 16 18 C -0.10 -3.83 5.40 30.66 0.17 -3.66 16 19 N -0.57 -15.48 10.39 -193.27 -2.01 -17.49 16 20 C 0.20 4.68 10.59 84.64 0.90 5.57 16 21 C -0.33 -7.20 5.38 -19.76 -0.11 -7.31 16 22 C 0.53 10.62 2.82 71.24 0.20 10.82 16 23 F -0.18 -3.39 15.99 44.97 0.72 -2.67 16 24 F -0.18 -3.67 15.44 44.97 0.69 -2.98 16 25 F -0.18 -3.62 16.54 44.97 0.74 -2.88 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.34 5.70 -2.39 -0.01 1.32 16 28 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 29 H 0.15 3.67 6.13 -2.91 -0.02 3.65 16 30 H 0.41 11.11 8.72 -92.71 -0.81 10.30 16 31 H 0.06 1.78 7.72 -2.38 -0.02 1.76 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.03 1.05 5.17 -2.39 -0.01 1.03 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.03 1.50 7.07 -2.39 -0.02 1.49 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.19 3.22 7.15 -2.91 -0.02 3.20 16 Total: -1.00 -55.99 329.14 4.72 -51.26 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.29 Total: 14.49 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 3.88 Total: -9.08 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -3.44 Total: -91.82 kcal Atomic # 9 Polarization: -10.69 SS G_CDS: 2.16 Total: -8.53 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.84 Total: 43.68 kcal Total: -55.99 4.72 -51.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.382 kcal (2) G-P(sol) polarization free energy of solvation -55.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds