Wall clock time and date at job start Tue Mar 31 2020 11:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34875 * 125.89827 * 2 1 4 4 C 1.40920 * 107.46362 * 180.28999 * 3 2 1 5 5 C 1.34875 * 107.45770 * 359.73640 * 4 3 2 6 6 C 1.50696 * 125.90043 * 179.97438 * 5 4 3 7 7 N 1.36537 * 125.90089 * 179.83996 * 2 1 3 8 8 C 1.40351 * 125.66198 * 359.96435 * 7 2 1 9 9 C 1.39092 * 119.91587 * 244.69712 * 8 7 2 10 10 C 1.38007 * 120.33873 * 180.25939 * 9 8 7 11 11 C 1.38687 * 120.16162 * 359.48096 * 10 9 8 12 12 O 1.35706 * 120.08905 * 180.23649 * 11 10 9 13 13 C 1.40189 * 119.82559 * 0.48957 * 11 10 9 14 14 C 1.47433 * 120.16529 * 179.74141 * 13 11 10 15 15 O 1.21624 * 119.99901 * 54.08748 * 14 13 11 16 16 N 1.34774 * 120.00235 * 234.07924 * 14 13 11 17 17 C 1.46502 * 120.00180 * 185.75905 * 16 14 13 18 18 C 1.36901 * 119.99896 * 5.76268 * 16 14 13 19 19 H 1.07999 * 120.00168 * 354.75201 * 18 16 14 20 20 C 1.39030 * 119.99983 * 174.75696 * 18 16 14 21 21 N 1.31375 * 119.99895 * 5.05187 * 20 18 16 22 22 Si 1.86800 * 119.99824 * 185.05861 * 20 18 16 23 23 H 1.48498 * 109.47199 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47253 * 119.99936 * 22 20 18 25 25 H 1.48504 * 109.47127 * 239.99759 * 22 20 18 26 26 C 1.38340 * 119.91432 * 64.67287 * 8 7 2 27 27 H 1.08998 * 109.46958 * 270.15890 * 1 2 3 28 28 H 1.08995 * 109.47084 * 30.16337 * 1 2 3 29 29 H 1.09000 * 109.46936 * 150.15928 * 1 2 3 30 30 H 1.08009 * 126.26710 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.27517 * 179.73569 * 4 3 2 32 32 H 1.09003 * 109.47193 * 270.03802 * 6 5 4 33 33 H 1.09006 * 109.47571 * 30.03749 * 6 5 4 34 34 H 1.09007 * 109.47474 * 150.03574 * 6 5 4 35 35 H 1.07997 * 119.83196 * 359.97370 * 9 8 7 36 36 H 1.07996 * 119.91854 * 179.74655 * 10 9 8 37 37 H 0.96702 * 114.00188 * 270.25716 * 12 11 10 38 38 H 1.09003 * 109.47094 * 4.82101 * 17 16 14 39 39 H 1.08995 * 109.47166 * 124.81933 * 17 16 14 40 40 H 1.09001 * 109.47066 * 244.82383 * 17 16 14 41 41 H 0.97003 * 119.99854 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.08288 * 359.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0926 0.0000 4 6 3.6347 0.6470 -0.0068 5 6 3.6117 -0.7016 -0.0048 6 6 4.8172 -1.6059 -0.0108 7 7 2.3076 -1.1060 0.0031 8 6 1.8638 -2.4375 0.0075 9 6 2.1337 -3.2551 1.0999 10 6 1.7061 -4.5671 1.1112 11 6 0.9936 -5.0771 0.0361 12 8 0.5696 -6.3661 0.0508 13 6 0.7172 -4.2589 -1.0682 14 6 -0.0346 -4.7950 -2.2176 15 8 -1.1185 -5.3189 -2.0443 16 7 0.4790 -4.7042 -3.4604 17 6 -0.3200 -5.1211 -4.6154 18 6 1.7473 -4.2225 -3.6433 19 1 2.3048 -3.8364 -2.8028 20 6 2.3177 -4.2303 -4.9112 21 7 1.6060 -4.6067 -5.9493 22 14 4.0961 -3.7057 -5.1385 23 1 4.6734 -3.3301 -3.8229 24 1 4.8737 -4.8304 -5.7179 25 1 4.1547 -2.5392 -6.0556 26 6 1.1584 -2.9331 -1.0744 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5163 29 1 -0.3633 -0.8914 -0.5114 30 1 1.9671 2.1208 0.0004 31 1 4.5162 1.2709 -0.0126 32 1 5.1021 -1.8248 -1.0399 33 1 5.6449 -1.1116 0.4980 34 1 4.5767 -2.5355 0.5053 35 1 2.6849 -2.8625 1.9416 36 1 1.9230 -5.1971 1.9611 37 1 1.2042 -6.9932 -0.3222 38 1 -1.3226 -5.3923 -4.2849 39 1 -0.3825 -4.2999 -5.3294 40 1 0.1508 -5.9814 -5.0913 41 1 2.0039 -4.6118 -6.8340 42 1 0.9488 -2.2968 -1.9215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186840531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:21 Heat of formation + Delta-G solvation = 16.040952 kcal Electronic energy + Delta-G solvation = -26745.145567 eV Core-core repulsion = 23078.118481 eV Total energy + Delta-G solvation = -3667.027086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.51406 -39.68610 -37.83629 -36.46130 -34.86823 -32.53595 -32.25837 -31.67057 -30.92042 -29.02881 -27.87000 -26.55395 -24.91715 -24.01654 -22.90224 -22.52330 -20.17273 -19.94980 -18.90613 -18.28054 -17.17092 -16.42588 -16.13884 -15.83698 -15.17632 -14.49516 -14.46102 -14.32137 -13.87714 -13.76365 -13.59927 -13.48537 -13.09030 -13.05236 -12.87463 -12.42563 -12.32267 -12.26657 -11.97342 -11.74310 -11.64178 -11.56087 -11.42884 -11.29178 -11.09842 -10.87761 -10.53251 -10.46252 -10.29073 -9.25805 -8.92980 -8.76252 -8.51095 -8.10539 -8.03521 -7.63918 -6.44507 -4.02672 1.13444 1.37072 2.38512 2.97583 3.04592 3.09996 3.12972 3.16026 3.45873 3.88100 3.99936 4.46814 4.58941 4.88622 4.93831 5.07628 5.14586 5.16752 5.35712 5.47251 5.56169 5.62706 5.68928 5.69914 5.73690 5.82206 5.90324 6.05373 6.07582 6.12942 6.25794 6.37761 6.49673 6.52696 6.57596 6.75672 6.84672 7.15235 7.23241 7.24798 7.34676 7.42814 7.58748 7.71952 7.94790 8.23818 8.89897 9.34575 9.75061 10.47291 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006298 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.689682 B = 4445.000136 C = 5629.300322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.023 3.977 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.022 3.978 6 C -0.087 4.087 7 N -0.392 5.392 8 C 0.092 3.908 9 C -0.098 4.098 10 C -0.142 4.142 11 C 0.145 3.855 12 O -0.482 6.482 13 C -0.084 4.084 14 C 0.477 3.523 15 O -0.594 6.594 16 N -0.429 5.429 17 C 0.122 3.878 18 C -0.333 4.333 19 H 0.103 0.897 20 C 0.037 3.963 21 N -0.868 5.868 22 Si 0.923 3.077 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.056 4.056 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.390 0.610 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.269 0.731 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 5.467 10.179 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.222 4.222 4 C -0.223 4.223 5 C -0.087 4.087 6 C -0.144 4.144 7 N -0.066 5.066 8 C 0.003 3.997 9 C -0.117 4.117 10 C -0.161 4.161 11 C 0.099 3.901 12 O -0.292 6.292 13 C -0.089 4.089 14 C 0.265 3.735 15 O -0.481 6.481 16 N -0.145 5.145 17 C -0.021 4.021 18 C -0.461 4.461 19 H 0.121 0.879 20 C -0.168 4.168 21 N -0.507 5.507 22 Si 0.749 3.251 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.076 4.076 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.246 0.754 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.490 5.095 10.222 12.272 hybrid contribution 1.496 0.147 -0.614 1.624 sum 5.986 5.242 9.608 12.475 Atomic orbital electron populations 1.20340 0.88352 1.03388 1.02398 1.20431 0.93437 0.85270 1.09502 1.20593 0.92703 0.97144 1.11807 1.20589 0.97229 0.92637 1.11842 1.20407 0.84188 0.94504 1.09625 1.20336 0.93317 0.97861 1.02887 1.41352 1.05470 1.02993 1.56793 1.17512 1.02964 0.83515 0.95690 1.20900 1.00619 0.93427 0.96768 1.21133 0.99850 0.95771 0.99372 1.18503 0.93932 0.85565 0.92125 1.84790 1.46068 1.14053 1.84269 1.20373 0.99039 0.93891 0.95578 1.17500 0.87070 0.86231 0.82689 1.90674 1.22869 1.49985 1.84582 1.43716 1.13771 1.52493 1.04522 1.21626 0.92133 1.01509 0.86797 1.19919 0.90211 1.40182 0.95747 0.87941 1.25325 1.00083 0.96336 0.95038 1.70222 1.35694 1.45200 0.99568 0.85905 0.81745 0.78483 0.78983 1.19071 1.20304 1.20302 1.21260 0.95259 0.94711 0.96354 0.91352 0.90297 0.91447 0.84802 0.84831 0.91009 0.90501 0.91702 0.85393 0.84649 0.75376 0.94499 0.90793 0.91967 0.92000 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 10.08 36.01 0.36 -0.81 16 2 C 0.02 0.36 6.80 -81.69 -0.56 -0.20 16 3 C -0.20 -2.87 10.76 -39.76 -0.43 -3.30 16 4 C -0.20 -2.86 10.76 -39.76 -0.43 -3.29 16 5 C 0.02 0.34 6.81 -81.69 -0.56 -0.22 16 6 C -0.09 -1.10 10.08 36.00 0.36 -0.74 16 7 N -0.39 -6.37 2.79 -52.60 -0.15 -6.52 16 8 C 0.09 1.55 5.02 -83.60 -0.42 1.13 16 9 C -0.10 -1.42 8.75 -39.35 -0.34 -1.76 16 10 C -0.14 -2.08 9.97 -39.50 -0.39 -2.47 16 11 C 0.15 2.63 6.70 -38.68 -0.26 2.37 16 12 O -0.48 -8.54 12.69 -22.32 -0.28 -8.82 16 13 C -0.08 -1.76 4.80 -104.86 -0.50 -2.26 16 14 C 0.48 11.77 6.76 -12.52 -0.08 11.69 16 15 O -0.59 -16.28 16.11 1.76 0.03 -16.26 16 16 N -0.43 -10.81 3.02 -123.42 -0.37 -11.19 16 17 C 0.12 3.02 8.85 59.85 0.53 3.55 16 18 C -0.33 -8.24 8.79 -14.99 -0.13 -8.37 16 19 H 0.10 2.45 5.32 -52.49 -0.28 2.17 16 20 C 0.04 0.91 5.46 -17.45 -0.10 0.81 16 21 N -0.87 -21.91 9.44 55.50 0.52 -21.39 16 22 Si 0.92 19.19 29.56 -169.99 -5.02 14.16 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.06 -1.07 6.32 -38.99 -0.25 -1.32 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.00 6.82 -51.93 -0.35 0.65 16 30 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.80 6.84 -51.93 -0.36 0.44 16 35 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.39 5.20 9.06 45.56 0.41 5.62 16 38 H 0.04 0.89 6.95 -51.93 -0.36 0.53 16 39 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 40 H 0.06 1.57 7.18 -51.93 -0.37 1.20 16 41 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 42 H 0.14 2.86 7.73 -52.49 -0.41 2.46 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -30.76 351.57 -7.76 -38.52 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -4.59 Total: 11.40 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.19 Total: -5.21 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.00 Total: -39.09 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.25 Total: -25.08 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.76 -7.76 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186840531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.561 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds