Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34875 * 125.89827 * 2 1 4 4 C 1.40920 * 107.46362 * 180.28999 * 3 2 1 5 5 C 1.34875 * 107.45770 * 359.73640 * 4 3 2 6 6 C 1.50696 * 125.90043 * 179.97438 * 5 4 3 7 7 N 1.36537 * 125.90089 * 179.83996 * 2 1 3 8 8 C 1.40351 * 125.66198 * 359.96435 * 7 2 1 9 9 C 1.39092 * 119.91587 * 244.69712 * 8 7 2 10 10 C 1.38007 * 120.33873 * 180.25939 * 9 8 7 11 11 C 1.38687 * 120.16162 * 359.48096 * 10 9 8 12 12 O 1.35706 * 120.08905 * 180.23649 * 11 10 9 13 13 C 1.40189 * 119.82559 * 0.48957 * 11 10 9 14 14 C 1.47433 * 120.16529 * 179.74141 * 13 11 10 15 15 O 1.21624 * 119.99901 * 54.08748 * 14 13 11 16 16 N 1.34774 * 120.00235 * 234.07924 * 14 13 11 17 17 C 1.46502 * 120.00180 * 185.75905 * 16 14 13 18 18 C 1.36901 * 119.99896 * 5.76268 * 16 14 13 19 19 H 1.07999 * 120.00168 * 354.75201 * 18 16 14 20 20 C 1.39030 * 119.99983 * 174.75696 * 18 16 14 21 21 N 1.31375 * 119.99895 * 5.05187 * 20 18 16 22 22 Si 1.86800 * 119.99824 * 185.05861 * 20 18 16 23 23 H 1.48498 * 109.47199 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47253 * 119.99936 * 22 20 18 25 25 H 1.48504 * 109.47127 * 239.99759 * 22 20 18 26 26 C 1.38340 * 119.91432 * 64.67287 * 8 7 2 27 27 H 1.08998 * 109.46958 * 270.15890 * 1 2 3 28 28 H 1.08995 * 109.47084 * 30.16337 * 1 2 3 29 29 H 1.09000 * 109.46936 * 150.15928 * 1 2 3 30 30 H 1.08009 * 126.26710 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.27517 * 179.73569 * 4 3 2 32 32 H 1.09003 * 109.47193 * 270.03802 * 6 5 4 33 33 H 1.09006 * 109.47571 * 30.03749 * 6 5 4 34 34 H 1.09007 * 109.47474 * 150.03574 * 6 5 4 35 35 H 1.07997 * 119.83196 * 359.97370 * 9 8 7 36 36 H 1.07996 * 119.91854 * 179.74655 * 10 9 8 37 37 H 0.96702 * 114.00188 * 270.25716 * 12 11 10 38 38 H 1.09003 * 109.47094 * 4.82101 * 17 16 14 39 39 H 1.08995 * 109.47166 * 124.81933 * 17 16 14 40 40 H 1.09001 * 109.47066 * 244.82383 * 17 16 14 41 41 H 0.97003 * 119.99854 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.08288 * 359.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0926 0.0000 4 6 3.6347 0.6470 -0.0068 5 6 3.6117 -0.7016 -0.0048 6 6 4.8172 -1.6059 -0.0108 7 7 2.3076 -1.1060 0.0031 8 6 1.8638 -2.4375 0.0075 9 6 2.1337 -3.2551 1.0999 10 6 1.7061 -4.5671 1.1112 11 6 0.9936 -5.0771 0.0361 12 8 0.5696 -6.3661 0.0508 13 6 0.7172 -4.2589 -1.0682 14 6 -0.0346 -4.7950 -2.2176 15 8 -1.1185 -5.3189 -2.0443 16 7 0.4790 -4.7042 -3.4604 17 6 -0.3200 -5.1211 -4.6154 18 6 1.7473 -4.2225 -3.6433 19 1 2.3048 -3.8364 -2.8028 20 6 2.3177 -4.2303 -4.9112 21 7 1.6060 -4.6067 -5.9493 22 14 4.0961 -3.7057 -5.1385 23 1 4.6734 -3.3301 -3.8229 24 1 4.8737 -4.8304 -5.7179 25 1 4.1547 -2.5392 -6.0556 26 6 1.1584 -2.9331 -1.0744 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5163 29 1 -0.3633 -0.8914 -0.5114 30 1 1.9671 2.1208 0.0004 31 1 4.5162 1.2709 -0.0126 32 1 5.1021 -1.8248 -1.0399 33 1 5.6449 -1.1116 0.4980 34 1 4.5767 -2.5355 0.5053 35 1 2.6849 -2.8625 1.9416 36 1 1.9230 -5.1971 1.9611 37 1 1.2042 -6.9932 -0.3222 38 1 -1.3226 -5.3923 -4.2849 39 1 -0.3825 -4.2999 -5.3294 40 1 0.1508 -5.9814 -5.0913 41 1 2.0039 -4.6118 -6.8340 42 1 0.9488 -2.2968 -1.9215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186840531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = -1.600867 kcal Electronic energy + Delta-G solvation = -26745.910574 eV Core-core repulsion = 23078.118481 eV Total energy + Delta-G solvation = -3667.792093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.67314 -41.22163 -39.54353 -37.79733 -36.82586 -33.68947 -33.55124 -33.39518 -32.39057 -30.04502 -29.16407 -28.46368 -26.75771 -25.06619 -24.39627 -23.84272 -21.61619 -21.19407 -20.53147 -19.69727 -18.68368 -18.09496 -17.47606 -17.29387 -16.55151 -16.26140 -16.12533 -15.80197 -15.32207 -15.18443 -14.88652 -14.73015 -14.54754 -14.15992 -14.03346 -13.72827 -13.67547 -13.57915 -13.43516 -13.27556 -13.09513 -12.84302 -12.78488 -12.72740 -12.64235 -12.40773 -12.32855 -12.12174 -11.71403 -11.16955 -10.61290 -10.12360 -10.07805 -9.98058 -9.32609 -8.74434 -8.33244 -5.98729 -0.20395 0.02860 1.24026 1.32276 1.38917 1.51278 1.77464 1.95139 2.07329 2.17092 2.41468 2.84218 3.06013 3.17753 3.74326 3.80515 3.83895 4.12177 4.14231 4.26795 4.32974 4.47495 4.50812 4.61768 4.66118 4.69532 4.76068 4.80861 4.89136 4.93865 5.04864 5.07877 5.09832 5.14468 5.24227 5.31884 5.33710 5.35613 5.46108 5.51807 5.63034 6.16227 6.30663 6.31407 6.56269 6.73678 6.97912 7.42229 7.82253 8.60568 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006298 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.689682 B = 4445.000136 C = 5629.300322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.002 4.002 3 C -0.201 4.201 4 C -0.204 4.204 5 C 0.005 3.995 6 C -0.085 4.085 7 N -0.404 5.404 8 C 0.095 3.905 9 C -0.078 4.078 10 C -0.121 4.121 11 C 0.139 3.861 12 O -0.496 6.496 13 C -0.119 4.119 14 C 0.473 3.527 15 O -0.632 6.632 16 N -0.442 5.442 17 C 0.136 3.864 18 C -0.346 4.346 19 H 0.109 0.891 20 C -0.005 4.005 21 N -0.896 5.896 22 Si 0.987 3.013 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.278 1.278 26 C -0.062 4.062 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.406 0.594 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.272 0.728 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 6.491 12.584 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.225 4.225 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.143 4.143 7 N -0.079 5.079 8 C 0.006 3.994 9 C -0.097 4.097 10 C -0.139 4.139 11 C 0.093 3.907 12 O -0.309 6.309 13 C -0.123 4.123 14 C 0.263 3.737 15 O -0.522 6.522 16 N -0.158 5.158 17 C -0.007 4.007 18 C -0.473 4.473 19 H 0.127 0.873 20 C -0.207 4.207 21 N -0.535 5.535 22 Si 0.810 3.190 23 H -0.180 1.180 24 H -0.197 1.197 25 H -0.203 1.203 26 C -0.082 4.082 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.171 0.829 31 H 0.174 0.826 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.180 0.820 36 H 0.195 0.805 37 H 0.265 0.735 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.125 6.123 12.630 15.741 hybrid contribution 0.646 -0.122 -1.315 1.470 sum 7.771 6.001 11.315 14.981 Atomic orbital electron populations 1.20361 0.87679 1.03011 1.03140 1.20837 0.94263 0.85615 1.10345 1.20945 0.92847 0.97869 1.10855 1.20962 0.97966 0.92748 1.11131 1.20938 0.84346 0.95412 1.09622 1.20419 0.93228 0.97978 1.02646 1.41499 1.06127 1.02713 1.57545 1.17561 1.02173 0.84285 0.95406 1.21280 0.99109 0.92845 0.96486 1.21459 0.97531 0.96035 0.98917 1.18723 0.94279 0.85495 0.92196 1.84738 1.47428 1.14350 1.84375 1.20161 1.01523 0.95183 0.95435 1.18132 0.86818 0.85265 0.83476 1.90617 1.24569 1.51576 1.85391 1.43918 1.14218 1.52817 1.04836 1.21391 0.91854 1.00635 0.86802 1.20168 0.90057 1.40779 0.96342 0.87320 1.26183 1.03842 0.96154 0.94541 1.70310 1.37263 1.45924 0.99980 0.84945 0.76956 0.78001 0.79129 1.18018 1.19720 1.20348 1.20952 0.96621 0.93894 0.96759 0.90017 0.88673 0.93795 0.82855 0.82614 0.92085 0.87732 0.91265 0.82036 0.80512 0.73482 0.94971 0.91784 0.92885 0.91740 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.22 10.08 71.24 0.72 -1.51 16 2 C 0.00 -0.06 6.80 41.05 0.28 0.22 16 3 C -0.20 -5.39 10.76 22.15 0.24 -5.15 16 4 C -0.20 -5.31 10.76 22.15 0.24 -5.07 16 5 C 0.01 0.15 6.81 41.05 0.28 0.43 16 6 C -0.09 -1.90 10.08 71.23 0.72 -1.18 16 7 N -0.40 -12.43 2.79 -320.32 -0.89 -13.32 16 8 C 0.10 3.05 5.02 38.01 0.19 3.24 16 9 C -0.08 -1.99 8.75 22.42 0.20 -1.80 16 10 C -0.12 -3.10 9.97 22.32 0.22 -2.88 16 11 C 0.14 4.88 6.70 22.85 0.15 5.03 16 12 O -0.50 -17.19 12.69 -86.92 -1.10 -18.29 16 13 C -0.12 -5.04 4.80 -20.02 -0.10 -5.13 16 14 C 0.47 24.32 6.76 86.67 0.59 24.91 16 15 O -0.63 -36.16 16.11 -0.76 -0.01 -36.17 16 16 N -0.44 -23.26 3.02 -662.63 -2.00 -25.26 16 17 C 0.14 7.09 8.85 127.77 1.13 8.23 16 18 C -0.35 -17.57 8.79 84.09 0.74 -16.83 16 19 H 0.11 5.28 5.32 -2.91 -0.02 5.27 16 20 C -0.01 -0.26 5.46 84.95 0.46 0.20 16 21 N -0.90 -46.27 9.44 21.68 0.20 -46.07 16 22 Si 0.99 39.13 29.56 68.60 2.03 41.16 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 26 C -0.06 -2.42 6.32 22.65 0.14 -2.28 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.35 6.82 -2.39 -0.02 1.33 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.07 1.45 6.84 -2.38 -0.02 1.43 16 35 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.18 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.41 10.53 9.06 -74.06 -0.67 9.86 16 38 H 0.03 1.65 6.95 -2.39 -0.02 1.64 16 39 H 0.06 3.41 6.90 -2.39 -0.02 3.39 16 40 H 0.05 2.81 7.18 -2.39 -0.02 2.79 16 41 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 42 H 0.11 4.87 7.73 -2.91 -0.02 4.85 16 Total: -1.00 -68.54 351.57 4.81 -63.72 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.39 Total: 33.78 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 6.20 Total: 0.45 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.69 Total: -84.65 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.12 Total: -54.47 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -68.54 4.81 -63.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186840531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.124 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds