Wall clock time and date at job start Tue Mar 31 2020 11:43:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.41383 * 126.79742 * 2 1
4 4 C 1.35455 * 103.98283 * 180.02562 * 3 2 1
5 5 C 1.50698 * 126.77501 * 180.26188 * 4 3 2
6 6 C 1.53002 * 109.47117 * 89.71161 * 5 4 3
7 7 H 1.08997 * 109.47194 * 54.99826 * 6 5 4
8 8 C 1.52999 * 109.47081 * 174.99911 * 6 5 4
9 9 N 1.46499 * 109.47129 * 294.99995 * 6 5 4
10 10 C 1.34780 * 120.00144 * 155.00155 * 9 6 5
11 11 O 1.21547 * 119.99881 * 359.97438 * 10 9 6
12 12 C 1.47885 * 119.99870 * 180.02562 * 10 9 6
13 13 C 1.39913 * 120.02740 * 359.72797 * 12 10 9
14 14 C 1.38332 * 120.35837 * 179.72047 * 13 12 10
15 15 C 1.37751 * 120.41225 * 0.55031 * 14 13 12
16 16 C 1.40755 * 120.03834 * 359.72593 * 15 14 13
17 17 C 1.41433 * 120.17645 * 180.02562 * 16 15 14
18 18 H 1.07997 * 120.00361 * 24.43540 * 17 16 15
19 19 C 1.39939 * 119.99886 * 204.43463 * 17 16 15
20 20 N 1.30825 * 120.00060 * 17.88281 * 19 17 16
21 21 Si 1.86797 * 120.00338 * 197.88029 * 19 17 16
22 22 H 1.48500 * 109.47291 * 60.00048 * 21 19 17
23 23 H 1.48503 * 109.47412 * 180.02562 * 21 19 17
24 24 H 1.48507 * 109.47104 * 300.00453 * 21 19 17
25 25 C 1.38995 * 120.02154 * 179.97438 * 12 10 9
26 26 O 1.34044 * 106.44359 * 0.02562 * 4 3 2
27 27 N 1.20918 * 111.56735 * 0.02562 * 26 4 3
28 28 H 1.08993 * 109.47610 * 269.99785 * 1 2 3
29 29 H 1.09005 * 109.47312 * 30.00571 * 1 2 3
30 30 H 1.09008 * 109.46787 * 149.99687 * 1 2 3
31 31 H 1.08001 * 128.01126 * 0.05660 * 3 2 1
32 32 H 1.08997 * 109.47253 * 209.70774 * 5 4 3
33 33 H 1.08997 * 109.47191 * 329.71465 * 5 4 3
34 34 H 1.08997 * 109.47176 * 59.99905 * 8 6 5
35 35 H 1.08999 * 109.46932 * 180.02562 * 8 6 5
36 36 H 1.08994 * 109.47048 * 299.99751 * 8 6 5
37 37 H 0.97000 * 119.99755 * 335.00100 * 9 6 5
38 38 H 1.07998 * 119.82235 * 359.97363 * 13 12 10
39 39 H 1.08002 * 119.79882 * 180.25504 * 14 13 12
40 40 H 1.08000 * 119.98136 * 179.74685 * 15 14 13
41 41 H 0.96998 * 120.00777 * 179.97438 * 20 19 17
42 42 H 1.07999 * 120.20662 * 359.97438 * 25 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1321 0.0000
4 6 3.6025 0.6069 -0.0006
5 6 4.9021 1.3697 0.0047
6 6 5.3362 1.6277 1.4490
7 1 5.3854 0.6816 1.9881
8 6 6.7149 2.2911 1.4563
9 7 4.3658 2.5110 2.1002
10 6 4.2269 2.4878 3.4406
11 8 4.9065 1.7338 4.1091
12 6 3.2468 3.3791 4.0979
13 6 2.4675 4.2507 3.3294
14 6 1.5446 5.0832 3.9366
15 6 1.3900 5.0722 5.3053
16 6 2.1692 4.2063 6.0955
17 6 2.0124 4.1922 7.5010
18 1 1.0813 4.5137 7.9439
19 6 3.0638 3.7615 8.3180
20 7 4.2814 3.7071 7.8427
21 14 2.7287 3.2645 10.0872
22 1 1.7695 2.1311 10.1098
23 1 3.9997 2.8510 10.7344
24 1 2.1506 4.4170 10.8241
25 6 3.1028 3.3553 5.4802
26 8 3.4537 -0.7253 -0.0015
27 7 2.2868 -1.0422 -0.0020
28 1 -0.3634 0.0000 1.0276
29 1 -0.3634 0.8900 -0.5139
30 1 -0.3633 -0.8900 -0.5139
31 1 2.0709 2.1744 0.0008
32 1 5.6680 0.7862 -0.5061
33 1 4.7670 2.3212 -0.5095
34 1 6.6658 3.2371 0.9172
35 1 7.0244 2.4744 2.4853
36 1 7.4369 1.6338 0.9718
37 1 3.8232 3.1125 1.5667
38 1 2.5842 4.2706 2.2559
39 1 0.9449 5.7495 3.3342
40 1 0.6702 5.7280 5.7725
41 1 5.0103 3.4089 8.4090
42 1 3.7048 2.6867 6.0778
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001188659704.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:43:55
Heat of formation + Delta-G solvation = 27.632910 kcal
Electronic energy + Delta-G solvation = -25615.817466 eV
Core-core repulsion = 21949.293045 eV
Total energy + Delta-G solvation = -3666.524421 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 2.23 seconds
Orbital eigenvalues (eV)
-44.90835 -39.43500 -37.28080 -36.04255 -34.75225 -33.78502 -32.64895 -31.11372
-29.62202 -29.37560 -28.72125 -27.13308 -25.34415 -23.36342 -22.97428 -21.30636
-20.87595 -20.01474 -19.61690 -17.84556 -17.55857 -17.23978 -16.20216 -15.93577
-15.14271 -14.98250 -14.68061 -14.25309 -14.06089 -13.74309 -13.46660 -13.33191
-13.11009 -13.07380 -12.86709 -12.73082 -12.57940 -12.51320 -12.12931 -11.75852
-11.66043 -11.22628 -11.16029 -11.09544 -11.03616 -10.75050 -10.52335 -10.04782
-9.99622 -9.72303 -9.36609 -9.22543 -9.03008 -8.73493 -7.65525 -7.54517
-6.82117 -4.43554 1.44674 2.19106 2.22924 2.80367 3.03687 3.06499
3.08049 3.15340 3.60257 3.84748 3.90773 4.17603 4.32447 4.61393
4.66360 4.89358 4.98720 5.13417 5.31845 5.35391 5.40992 5.47376
5.51033 5.59118 5.62041 5.70085 5.73491 5.78838 6.01058 6.08586
6.11804 6.23676 6.27591 6.69589 6.83642 6.96565 6.99574 7.19079
7.35769 7.67357 7.72997 7.90155 8.06161 8.16867 8.27015 8.48296
8.78117 8.81336 8.93371 10.12512
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.014524 B = 0.003623 C = 0.003386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1927.379241 B = 7726.522924 C = 8266.818504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.018 3.982
3 C -0.223 4.223
4 C -0.024 4.024
5 C -0.047 4.047
6 C 0.145 3.855
7 H 0.091 0.909
8 C -0.162 4.162
9 N -0.732 5.732
10 C 0.566 3.434
11 O -0.544 6.544
12 C -0.127 4.127
13 C -0.218 4.218
14 C -0.097 4.097
15 C -0.213 4.213
16 C 0.100 3.900
17 C -0.460 4.460
18 H 0.081 0.919
19 C 0.074 3.926
20 N -0.782 5.782
21 Si 0.910 3.090
22 H -0.263 1.263
23 H -0.277 1.277
24 H -0.265 1.265
25 C -0.093 4.093
26 O 0.097 5.903
27 N -0.370 5.370
28 H 0.082 0.918
29 H 0.081 0.919
30 H 0.073 0.927
31 H 0.170 0.830
32 H 0.103 0.897
33 H 0.102 0.898
34 H 0.058 0.942
35 H 0.069 0.931
36 H 0.064 0.936
37 H 0.397 0.603
38 H 0.088 0.912
39 H 0.092 0.908
40 H 0.095 0.905
41 H 0.285 0.715
42 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.163 -2.278 -15.340 15.509
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.141 4.141
3 C -0.245 4.245
4 C -0.088 4.088
5 C -0.086 4.086
6 C 0.040 3.960
7 H 0.109 0.891
8 C -0.220 4.220
9 N -0.386 5.386
10 C 0.357 3.643
11 O -0.422 6.422
12 C -0.130 4.130
13 C -0.238 4.238
14 C -0.115 4.115
15 C -0.233 4.233
16 C 0.097 3.903
17 C -0.489 4.489
18 H 0.099 0.901
19 C -0.145 4.145
20 N -0.406 5.406
21 Si 0.734 3.266
22 H -0.187 1.187
23 H -0.202 1.202
24 H -0.189 1.189
25 C -0.113 4.113
26 O 0.032 5.968
27 N -0.075 5.075
28 H 0.101 0.899
29 H 0.100 0.900
30 H 0.092 0.908
31 H 0.187 0.813
32 H 0.121 0.879
33 H 0.120 0.880
34 H 0.077 0.923
35 H 0.088 0.912
36 H 0.083 0.917
37 H 0.232 0.768
38 H 0.106 0.894
39 H 0.110 0.890
40 H 0.113 0.887
41 H 0.096 0.904
42 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 0.375 -4.211 -14.783 15.376
hybrid contribution -0.443 1.069 0.535 1.275
sum -0.067 -3.143 -14.248 14.590
Atomic orbital electron populations
1.20169 0.86033 1.03452 1.03686 1.23584 0.99062 0.88868 1.02536
1.22386 0.91156 1.01115 1.09811 1.24342 0.98229 0.83850 1.02375
1.20548 0.90748 0.99124 0.98145 1.20827 0.88948 0.95482 0.90771
0.89108 1.22173 0.95622 1.00721 1.03520 1.46012 1.41958 1.43054
1.07607 1.18832 0.82315 0.82123 0.81028 1.90698 1.46735 1.40793
1.63964 1.19461 0.99075 0.99620 0.94887 1.20288 1.03223 1.03893
0.96433 1.20420 0.97948 0.98449 0.94729 1.21093 1.06052 1.02917
0.93233 1.17591 0.90318 0.88969 0.93423 1.19569 0.99945 1.38504
0.90906 0.90105 1.25959 0.94313 0.92891 1.01378 1.69775 1.00072
1.32344 1.38458 0.86332 0.78858 0.80093 0.81298 1.18709 1.20183
1.18937 1.21643 0.99628 0.98804 0.91216 1.84791 1.21677 1.22724
1.67655 1.73811 0.89304 1.24174 1.20246 0.89918 0.90021 0.90800
0.81292 0.87889 0.87967 0.92277 0.91225 0.91709 0.76771 0.89420
0.88970 0.88662 0.90356 0.84890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.76 10.47 36.01 0.38 -0.38 16
2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16
3 C -0.22 -2.65 10.98 -39.38 -0.43 -3.08 16
4 C -0.02 -0.29 6.48 -35.30 -0.23 -0.52 16
5 C -0.05 -0.42 5.32 -27.88 -0.15 -0.57 16
6 C 0.15 1.82 2.56 -67.93 -0.17 1.65 16
7 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16
8 C -0.16 -1.82 9.48 37.16 0.35 -1.46 16
9 N -0.73 -11.19 4.68 -54.74 -0.26 -11.45 16
10 C 0.57 12.00 7.74 -12.31 -0.10 11.90 16
11 O -0.54 -13.40 16.00 5.32 0.09 -13.32 16
12 C -0.13 -2.94 5.87 -105.04 -0.62 -3.56 16
13 C -0.22 -4.41 9.55 -38.92 -0.37 -4.79 16
14 C -0.10 -2.01 10.01 -39.72 -0.40 -2.41 16
15 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16
16 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16
17 C -0.46 -12.04 9.05 -37.73 -0.34 -12.38 16
18 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16
19 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16
20 N -0.78 -20.64 10.96 55.55 0.61 -20.03 16
21 Si 0.91 18.77 29.59 -169.99 -5.03 13.73 16
22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16
23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16
24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16
25 C -0.09 -2.46 8.24 -38.44 -0.32 -2.77 16
26 O 0.10 1.37 11.20 17.17 0.19 1.57 16
27 N -0.37 -5.57 12.07 33.42 0.40 -5.17 16
28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16
31 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16
32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
37 H 0.40 5.15 6.62 -40.82 -0.27 4.88 16
38 H 0.09 1.42 6.38 -52.49 -0.33 1.09 16
39 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16
40 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16
41 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16
42 H 0.13 3.83 5.74 -52.49 -0.30 3.53 16
LS Contribution 361.22 15.07 5.44 5.44
Total: -1.00 -31.52 361.22 -8.11 -39.64
By element:
Atomic # 1 Polarization: 15.38 SS G_CDS: -5.50 Total: 9.89 kcal
Atomic # 6 Polarization: -16.25 SS G_CDS: -4.06 Total: -20.31 kcal
Atomic # 7 Polarization: -37.40 SS G_CDS: 0.76 Total: -36.64 kcal
Atomic # 8 Polarization: -12.03 SS G_CDS: 0.28 Total: -11.75 kcal
Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.73 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -31.52 -8.11 -39.64 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188659704.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.271 kcal
(2) G-P(sol) polarization free energy of solvation -31.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.23 seconds