Wall clock time and date at job start Tue Mar 31 2020 11:43:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.41383 * 126.79742 * 2 1
4 4 C 1.35455 * 103.98283 * 180.02562 * 3 2 1
5 5 C 1.50698 * 126.77501 * 180.26188 * 4 3 2
6 6 C 1.53002 * 109.47117 * 89.71161 * 5 4 3
7 7 H 1.08997 * 109.47194 * 54.99826 * 6 5 4
8 8 C 1.52999 * 109.47081 * 174.99911 * 6 5 4
9 9 N 1.46499 * 109.47129 * 294.99995 * 6 5 4
10 10 C 1.34780 * 120.00144 * 155.00155 * 9 6 5
11 11 O 1.21547 * 119.99881 * 359.97438 * 10 9 6
12 12 C 1.47885 * 119.99870 * 180.02562 * 10 9 6
13 13 C 1.39913 * 120.02740 * 359.72797 * 12 10 9
14 14 C 1.38332 * 120.35837 * 179.72047 * 13 12 10
15 15 C 1.37751 * 120.41225 * 0.55031 * 14 13 12
16 16 C 1.40755 * 120.03834 * 359.72593 * 15 14 13
17 17 C 1.41433 * 120.17645 * 180.02562 * 16 15 14
18 18 H 1.07997 * 120.00361 * 24.43540 * 17 16 15
19 19 C 1.39939 * 119.99886 * 204.43463 * 17 16 15
20 20 N 1.30825 * 120.00060 * 17.88281 * 19 17 16
21 21 Si 1.86797 * 120.00338 * 197.88029 * 19 17 16
22 22 H 1.48500 * 109.47291 * 60.00048 * 21 19 17
23 23 H 1.48503 * 109.47412 * 180.02562 * 21 19 17
24 24 H 1.48507 * 109.47104 * 300.00453 * 21 19 17
25 25 C 1.38995 * 120.02154 * 179.97438 * 12 10 9
26 26 O 1.34044 * 106.44359 * 0.02562 * 4 3 2
27 27 N 1.20918 * 111.56735 * 0.02562 * 26 4 3
28 28 H 1.08993 * 109.47610 * 269.99785 * 1 2 3
29 29 H 1.09005 * 109.47312 * 30.00571 * 1 2 3
30 30 H 1.09008 * 109.46787 * 149.99687 * 1 2 3
31 31 H 1.08001 * 128.01126 * 0.05660 * 3 2 1
32 32 H 1.08997 * 109.47253 * 209.70774 * 5 4 3
33 33 H 1.08997 * 109.47191 * 329.71465 * 5 4 3
34 34 H 1.08997 * 109.47176 * 59.99905 * 8 6 5
35 35 H 1.08999 * 109.46932 * 180.02562 * 8 6 5
36 36 H 1.08994 * 109.47048 * 299.99751 * 8 6 5
37 37 H 0.97000 * 119.99755 * 335.00100 * 9 6 5
38 38 H 1.07998 * 119.82235 * 359.97363 * 13 12 10
39 39 H 1.08002 * 119.79882 * 180.25504 * 14 13 12
40 40 H 1.08000 * 119.98136 * 179.74685 * 15 14 13
41 41 H 0.96998 * 120.00777 * 179.97438 * 20 19 17
42 42 H 1.07999 * 120.20662 * 359.97438 * 25 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1321 0.0000
4 6 3.6025 0.6069 -0.0006
5 6 4.9021 1.3697 0.0047
6 6 5.3362 1.6277 1.4490
7 1 5.3854 0.6816 1.9881
8 6 6.7149 2.2911 1.4563
9 7 4.3658 2.5110 2.1002
10 6 4.2269 2.4878 3.4406
11 8 4.9065 1.7338 4.1091
12 6 3.2468 3.3791 4.0979
13 6 2.4675 4.2507 3.3294
14 6 1.5446 5.0832 3.9366
15 6 1.3900 5.0722 5.3053
16 6 2.1692 4.2063 6.0955
17 6 2.0124 4.1922 7.5010
18 1 1.0813 4.5137 7.9439
19 6 3.0638 3.7615 8.3180
20 7 4.2814 3.7071 7.8427
21 14 2.7287 3.2645 10.0872
22 1 1.7695 2.1311 10.1098
23 1 3.9997 2.8510 10.7344
24 1 2.1506 4.4170 10.8241
25 6 3.1028 3.3553 5.4802
26 8 3.4537 -0.7253 -0.0015
27 7 2.2868 -1.0422 -0.0020
28 1 -0.3634 0.0000 1.0276
29 1 -0.3634 0.8900 -0.5139
30 1 -0.3633 -0.8900 -0.5139
31 1 2.0709 2.1744 0.0008
32 1 5.6680 0.7862 -0.5061
33 1 4.7670 2.3212 -0.5095
34 1 6.6658 3.2371 0.9172
35 1 7.0244 2.4744 2.4853
36 1 7.4369 1.6338 0.9718
37 1 3.8232 3.1125 1.5667
38 1 2.5842 4.2706 2.2559
39 1 0.9449 5.7495 3.3342
40 1 0.6702 5.7280 5.7725
41 1 5.0103 3.4089 8.4090
42 1 3.7048 2.6867 6.0778
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001188659704.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:43:54
Heat of formation + Delta-G solvation = 8.507210 kcal
Electronic energy + Delta-G solvation = -25616.646819 eV
Core-core repulsion = 21949.293045 eV
Total energy + Delta-G solvation = -3667.353774 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-45.87653 -41.00026 -38.95099 -37.37582 -35.67393 -35.61437 -33.86094 -32.48211
-31.32792 -30.98405 -29.57487 -27.97772 -27.20634 -24.82658 -24.01813 -22.86843
-22.32091 -21.23215 -20.95339 -19.53779 -18.60660 -18.27148 -17.79292 -17.35840
-16.79761 -16.39462 -16.02005 -15.72486 -15.41906 -15.11939 -14.79441 -14.46100
-14.27046 -14.24670 -14.08905 -13.99770 -13.75157 -13.47687 -13.32409 -13.18387
-12.90067 -12.80730 -12.66802 -12.52951 -12.22369 -12.15095 -11.94450 -11.85567
-11.50350 -11.06921 -10.92352 -10.75445 -10.33520 -10.10992 -9.45635 -9.36781
-8.67039 -6.38306 0.40702 0.51625 1.02429 1.30313 1.34555 1.46352
1.49213 2.12126 2.17821 2.19022 2.29756 2.79630 3.32248 3.48720
3.71239 3.75085 4.04794 4.08047 4.17930 4.26617 4.42932 4.46727
4.51586 4.60345 4.65702 4.70861 4.77775 4.82580 4.89440 4.92650
5.00605 5.08057 5.10875 5.21518 5.27172 5.31965 5.34737 5.52285
5.57963 5.88019 5.93883 6.06331 6.30291 6.52861 6.72319 6.88085
6.95791 7.32838 7.36898 8.29369
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.014524 B = 0.003623 C = 0.003386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1927.379241 B = 7726.522924 C = 8266.818504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.004 3.996
3 C -0.229 4.229
4 C -0.029 4.029
5 C -0.035 4.035
6 C 0.142 3.858
7 H 0.057 0.943
8 C -0.156 4.156
9 N -0.706 5.706
10 C 0.561 3.439
11 O -0.592 6.592
12 C -0.139 4.139
13 C -0.192 4.192
14 C -0.095 4.095
15 C -0.218 4.218
16 C 0.067 3.933
17 C -0.501 4.501
18 H 0.083 0.917
19 C 0.031 3.969
20 N -0.825 5.825
21 Si 0.980 3.020
22 H -0.263 1.263
23 H -0.272 1.272
24 H -0.251 1.251
25 C -0.135 4.135
26 O 0.077 5.923
27 N -0.407 5.407
28 H 0.078 0.922
29 H 0.107 0.893
30 H 0.077 0.923
31 H 0.197 0.803
32 H 0.132 0.868
33 H 0.141 0.859
34 H 0.084 0.916
35 H 0.028 0.972
36 H 0.093 0.907
37 H 0.413 0.587
38 H 0.142 0.858
39 H 0.141 0.859
40 H 0.107 0.893
41 H 0.286 0.714
42 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.975 -0.533 -18.554 18.588
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.154 4.154
3 C -0.250 4.250
4 C -0.093 4.093
5 C -0.073 4.073
6 C 0.037 3.963
7 H 0.075 0.925
8 C -0.214 4.214
9 N -0.359 5.359
10 C 0.351 3.649
11 O -0.473 6.473
12 C -0.142 4.142
13 C -0.212 4.212
14 C -0.112 4.112
15 C -0.238 4.238
16 C 0.065 3.935
17 C -0.530 4.530
18 H 0.101 0.899
19 C -0.184 4.184
20 N -0.450 5.450
21 Si 0.800 3.200
22 H -0.187 1.187
23 H -0.197 1.197
24 H -0.175 1.175
25 C -0.156 4.156
26 O 0.014 5.986
27 N -0.116 5.116
28 H 0.096 0.904
29 H 0.126 0.874
30 H 0.096 0.904
31 H 0.214 0.786
32 H 0.150 0.850
33 H 0.159 0.841
34 H 0.103 0.897
35 H 0.047 0.953
36 H 0.112 0.888
37 H 0.251 0.749
38 H 0.159 0.841
39 H 0.159 0.841
40 H 0.125 0.875
41 H 0.096 0.904
42 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -0.440 -2.439 -18.064 18.234
hybrid contribution -0.228 0.562 1.280 1.417
sum -0.669 -1.877 -16.784 16.902
Atomic orbital electron populations
1.20299 0.84297 1.04994 1.03790 1.24225 1.00499 0.89111 1.01590
1.22807 0.90772 1.02039 1.09377 1.24945 0.99632 0.83165 1.01524
1.20675 0.90154 1.01016 0.95441 1.21011 0.89280 0.93519 0.92480
0.92503 1.22124 0.95076 1.02569 1.01665 1.45798 1.41836 1.42788
1.05497 1.18716 0.81753 0.81540 0.82861 1.90677 1.48431 1.42659
1.65555 1.19811 0.99779 1.00423 0.94181 1.20851 1.00579 1.00940
0.98821 1.20937 0.97855 0.98536 0.93909 1.21415 1.05416 1.02213
0.94774 1.17926 0.91394 0.90004 0.94165 1.19850 1.00550 1.40878
0.91758 0.89889 1.26818 0.93718 0.92294 1.05591 1.69881 1.00991
1.34148 1.40026 0.85289 0.78693 0.79900 0.76112 1.18699 1.19672
1.17460 1.21440 1.01236 1.00031 0.92867 1.84742 1.21510 1.24183
1.68165 1.73811 0.89940 1.25675 1.22128 0.90375 0.87406 0.90432
0.78551 0.84991 0.84074 0.89743 0.95304 0.88777 0.74899 0.84087
0.84141 0.87523 0.90387 0.88750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.38 10.47 71.24 0.75 -0.64 16
2 C 0.00 0.10 7.33 43.58 0.32 0.42 16
3 C -0.23 -4.67 10.98 22.40 0.25 -4.42 16
4 C -0.03 -0.61 6.48 25.04 0.16 -0.45 16
5 C -0.03 -0.47 5.32 29.85 0.16 -0.31 16
6 C 0.14 3.24 2.56 44.99 0.12 3.36 16
7 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16
8 C -0.16 -3.12 9.48 71.98 0.68 -2.44 16
9 N -0.71 -19.87 4.68 -445.37 -2.08 -21.96 16
10 C 0.56 23.92 7.74 86.80 0.67 24.59 16
11 O -0.59 -30.75 16.00 -3.86 -0.06 -30.81 16
12 C -0.14 -6.40 5.87 -20.14 -0.12 -6.52 16
13 C -0.19 -7.07 9.55 22.70 0.22 -6.85 16
14 C -0.09 -3.56 10.01 22.18 0.22 -3.33 16
15 C -0.22 -10.03 9.78 22.77 0.22 -9.80 16
16 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16
17 C -0.50 -27.51 9.05 23.47 0.21 -27.30 16
18 H 0.08 4.29 7.91 -2.91 -0.02 4.27 16
19 C 0.03 1.63 5.14 85.25 0.44 2.07 16
20 N -0.82 -46.55 10.96 21.82 0.24 -46.31 16
21 Si 0.98 40.20 29.59 68.60 2.03 42.23 16
22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16
23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16
24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16
25 C -0.14 -7.52 8.24 23.01 0.19 -7.33 16
26 O 0.08 2.12 11.20 71.60 0.80 2.92 16
27 N -0.41 -12.10 12.07 -49.57 -0.60 -12.70 16
28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
29 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16
30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16
31 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16
32 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16
33 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
35 H 0.03 0.81 8.14 -2.39 -0.02 0.80 16
36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
37 H 0.41 8.70 6.62 -92.71 -0.61 8.08 16
38 H 0.14 3.63 6.38 -2.91 -0.02 3.61 16
39 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16
40 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16
41 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16
42 H 0.09 5.92 5.74 -2.91 -0.02 5.91 16
Total: -1.00 -77.73 361.22 5.13 -72.60
By element:
Atomic # 1 Polarization: 29.01 SS G_CDS: 0.44 Total: 29.45 kcal
Atomic # 6 Polarization: -39.78 SS G_CDS: 4.37 Total: -35.41 kcal
Atomic # 7 Polarization: -78.53 SS G_CDS: -2.44 Total: -80.97 kcal
Atomic # 8 Polarization: -28.63 SS G_CDS: 0.74 Total: -27.89 kcal
Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal
Total: -77.73 5.13 -72.60 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188659704.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.104 kcal
(2) G-P(sol) polarization free energy of solvation -77.727 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.377 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds