Wall clock time and date at job start Tue Mar 31 2020 10:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39253 * 119.59418 * 2 1 4 4 C 1.36153 * 121.01761 * 180.25640 * 3 2 1 5 5 C 1.40505 * 119.75542 * 0.04266 * 4 3 2 6 6 N 1.33892 * 120.99693 * 179.97438 * 5 4 3 7 7 C 1.31684 * 121.40295 * 180.02562 * 6 5 4 8 8 O 1.35580 * 119.15727 * 179.97438 * 7 6 5 9 9 C 1.39641 * 121.68669 * 359.97438 * 7 6 5 10 10 C 1.37007 * 119.83028 * 0.02562 * 9 7 6 11 11 O 1.35593 * 120.93318 * 179.97438 * 10 9 7 12 12 C 1.42899 * 117.00065 * 5.94412 * 11 10 9 13 13 C 1.53933 * 113.73562 * 254.45495 * 12 11 10 14 14 N 1.47955 * 86.18188 * 221.92318 * 13 12 11 15 15 C 1.46900 * 111.00328 * 137.58471 * 14 13 12 16 16 C 1.50703 * 109.46776 * 70.63702 * 15 14 13 17 17 H 1.07994 * 120.00187 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99753 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99813 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47303 * 90.00047 * 20 18 16 22 22 H 1.48499 * 109.46702 * 209.99918 * 20 18 16 23 23 H 1.48499 * 109.47037 * 329.99701 * 20 18 16 24 24 C 1.47967 * 90.76409 * 24.69258 * 14 13 12 25 25 C 1.41487 * 119.10134 * 359.95727 * 5 4 3 26 26 C 1.36268 * 119.59209 * 180.26915 * 2 1 3 27 27 H 1.09001 * 109.47340 * 269.72410 * 1 2 3 28 28 H 1.09001 * 109.47243 * 29.72797 * 1 2 3 29 29 H 1.09000 * 109.47349 * 149.72928 * 1 2 3 30 30 H 1.08007 * 119.48525 * 0.27498 * 3 2 1 31 31 H 1.07999 * 120.12351 * 179.97438 * 4 3 2 32 32 H 0.96695 * 114.00404 * 270.01499 * 8 7 6 33 33 H 1.07999 * 120.08986 * 179.97438 * 9 7 6 34 34 H 1.08994 * 112.93505 * 26.16676 * 12 11 10 35 35 H 1.09004 * 113.75874 * 336.24437 * 13 12 11 36 36 H 1.08998 * 113.75582 * 107.60166 * 13 12 11 37 37 H 1.08992 * 109.47587 * 190.64309 * 15 14 13 38 38 H 1.09005 * 109.46414 * 310.64306 * 15 14 13 39 39 H 0.96996 * 119.99714 * 179.97438 * 19 18 16 40 40 H 1.09001 * 113.75552 * 220.99753 * 24 14 13 41 41 H 1.08993 * 113.75517 * 89.62775 * 24 14 13 42 42 H 1.07999 * 120.17754 * 359.70748 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.2109 0.0000 4 6 3.5557 1.2447 -0.0052 5 6 4.2831 0.0426 -0.0116 6 7 5.6220 0.0469 -0.0174 7 6 6.3117 -1.0749 -0.0239 8 8 7.6663 -1.0175 -0.0300 9 6 5.6837 -2.3221 -0.0246 10 6 4.3156 -2.3962 -0.0189 11 8 3.6825 -3.5953 -0.0200 12 6 4.5001 -4.7607 0.1046 13 6 4.6652 -5.5452 -1.2095 14 7 4.4913 -6.7637 -0.3885 15 6 3.6163 -7.7323 -1.0624 16 6 4.3366 -8.3191 -2.2490 17 1 5.3437 -8.0044 -2.4791 18 6 3.7097 -9.2579 -3.0408 19 7 4.3385 -9.7704 -4.0759 20 14 1.9674 -9.8017 -2.6431 21 1 1.0012 -8.9235 -3.3503 22 1 1.7745 -11.2064 -3.0844 23 1 1.7417 -9.7076 -1.1784 24 6 3.7444 -5.9942 0.6310 25 6 3.5817 -1.1862 -0.0116 26 6 2.1798 -1.1849 -0.0056 27 1 -0.3634 -0.0049 1.0276 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3634 -0.8875 -0.5180 30 1 1.6396 2.1374 0.0045 31 1 4.0744 2.1920 -0.0056 32 1 8.0551 -0.9980 -0.9151 33 1 6.2747 -3.2260 -0.0304 34 1 5.4392 -4.5673 0.6230 35 1 3.8594 -5.3787 -1.9245 36 1 5.6559 -5.4531 -1.6544 37 1 3.3525 -8.5290 -0.3670 38 1 2.7099 -7.2295 -1.3998 39 1 3.8977 -10.4311 -4.6327 40 1 3.9996 -6.2608 1.6566 41 1 2.6694 -5.9591 0.4542 42 1 1.6361 -2.1181 -0.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226854319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:09 Heat of formation + Delta-G solvation = 18.399897 kcal Electronic energy + Delta-G solvation = -25249.714621 eV Core-core repulsion = 21582.789826 eV Total energy + Delta-G solvation = -3666.924795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42426 -39.95993 -38.61578 -37.79127 -36.07450 -33.02283 -32.59609 -31.64453 -30.30158 -29.84943 -26.88117 -26.09162 -25.66368 -24.04091 -22.91045 -22.34802 -21.22362 -19.73842 -19.34926 -18.20527 -17.61320 -17.05776 -16.93114 -15.95568 -15.60293 -15.45968 -14.86798 -14.66228 -14.49325 -14.37397 -14.15021 -14.12843 -13.64022 -13.40873 -12.93540 -12.72709 -12.56063 -12.41740 -12.25642 -12.18237 -11.87116 -11.53799 -11.46324 -11.23148 -11.11059 -10.85589 -10.69808 -10.08850 -9.89654 -9.69686 -9.67796 -9.40955 -8.87353 -8.71385 -8.22929 -8.05423 -6.16133 -4.15592 0.27474 0.53892 1.80882 2.58308 2.79985 3.20331 3.28817 3.29603 3.40582 3.86226 4.27504 4.31978 4.38704 4.45790 4.53443 4.53897 4.61904 4.80148 4.92582 5.05323 5.14855 5.16135 5.19204 5.31783 5.36847 5.46854 5.53411 5.67888 5.71874 5.79456 5.82799 5.86433 6.00838 6.07932 6.12263 6.15518 6.27529 6.33598 6.59917 6.62400 7.09459 7.11146 7.32064 7.56271 7.62726 7.76195 8.46310 8.90449 9.44092 10.96835 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.003264 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.898977 B = 8576.408415 C = 9847.445189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.082 4.082 4 C -0.106 4.106 5 C 0.177 3.823 6 N -0.526 5.526 7 C 0.381 3.619 8 O -0.483 6.483 9 C -0.298 4.298 10 C 0.216 3.784 11 O -0.290 6.290 12 C 0.037 3.963 13 C 0.011 3.989 14 N -0.461 5.461 15 C 0.132 3.868 16 C -0.517 4.517 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.006 3.994 25 C -0.129 4.129 26 C -0.067 4.067 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.405 0.595 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.035 0.965 38 H -0.005 1.005 39 H 0.265 0.735 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 21.420 8.854 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 C -0.102 4.102 4 C -0.125 4.125 5 C 0.056 3.944 6 N -0.249 5.249 7 C 0.189 3.811 8 O -0.290 6.290 9 C -0.320 4.320 10 C 0.161 3.839 11 O -0.199 6.199 12 C -0.019 4.019 13 C -0.118 4.118 14 N -0.185 5.185 15 C 0.005 3.995 16 C -0.555 4.555 17 H 0.098 0.902 18 C -0.132 4.132 19 N -0.535 5.535 20 Si 0.703 3.297 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.086 4.086 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.264 0.736 33 H 0.169 0.831 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.012 0.988 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.475 21.577 9.462 23.815 hybrid contribution -1.589 -0.999 -0.720 2.011 sum -5.064 20.578 8.742 22.924 Atomic orbital electron populations 1.20802 0.90686 1.03045 1.02471 1.19643 0.96602 0.92773 1.01513 1.20832 0.93851 0.97810 0.97689 1.20673 0.93430 0.96607 1.01762 1.18313 0.87805 0.91970 0.96346 1.67573 1.07235 1.30657 1.19477 1.18887 0.84223 0.87023 0.90954 1.84699 1.14356 1.95817 1.34160 1.21829 0.94325 1.00163 1.15726 1.18871 0.90401 0.85872 0.88710 1.86145 1.36973 1.11950 1.84838 1.25201 0.95371 0.81076 1.00240 1.24265 1.03540 0.89509 0.94453 1.68552 1.36074 1.06240 1.07623 1.20697 0.91435 0.92007 0.95363 1.20919 1.02672 1.23318 1.08594 0.90226 1.24908 0.97789 0.95751 0.94713 1.69883 1.37630 1.29275 1.16673 0.86848 0.85261 0.78372 0.79229 1.20211 1.20943 1.19110 1.24246 0.98378 0.89964 0.99710 1.18314 0.94955 0.91115 1.08747 1.20813 0.92020 0.98656 0.97093 0.91081 0.91409 0.91275 0.85211 0.84450 0.73607 0.83073 0.87226 0.90076 0.89122 0.94684 0.98763 0.92482 0.88794 0.90602 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.99 36.00 0.36 -0.43 16 2 C -0.11 -1.01 5.85 -104.96 -0.61 -1.63 16 3 C -0.08 -0.73 9.58 -39.95 -0.38 -1.11 16 4 C -0.11 -1.12 9.98 -39.48 -0.39 -1.52 16 5 C 0.18 2.34 6.60 -84.88 -0.56 1.78 16 6 N -0.53 -7.39 10.37 -11.14 -0.12 -7.51 16 7 C 0.38 5.00 7.71 -17.09 -0.13 4.87 16 8 O -0.48 -5.34 13.54 -18.44 -0.25 -5.58 16 9 C -0.30 -3.86 8.94 -39.50 -0.35 -4.22 16 10 C 0.22 2.98 6.70 -38.78 -0.26 2.72 16 11 O -0.29 -4.15 9.46 -18.48 -0.17 -4.33 16 12 C 0.04 0.53 3.86 -25.80 -0.10 0.43 16 13 C 0.01 0.20 7.29 -2.77 -0.02 0.18 16 14 N -0.46 -9.13 6.25 -239.98 -1.50 -10.63 16 15 C 0.13 3.09 3.65 -4.97 -0.02 3.07 16 16 C -0.52 -14.37 9.40 -34.44 -0.32 -14.69 16 17 H 0.08 2.41 8.04 -52.49 -0.42 1.99 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 20 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 24 C 0.01 0.09 7.81 -2.76 -0.02 0.07 16 25 C -0.13 -1.72 5.75 -106.68 -0.61 -2.33 16 26 C -0.07 -0.78 9.19 -39.56 -0.36 -1.15 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.41 2.44 9.06 45.56 0.41 2.85 16 33 H 0.15 1.79 6.00 -52.49 -0.31 1.47 16 34 H 0.11 1.42 6.08 -51.93 -0.32 1.10 16 35 H 0.08 1.53 7.78 -51.93 -0.40 1.12 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 38 H -0.01 -0.12 7.11 -51.93 -0.37 -0.49 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.17 7.79 -51.93 -0.40 0.77 16 42 H 0.14 1.51 7.66 -52.49 -0.40 1.11 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -32.94 351.29 -9.25 -42.19 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.71 Total: 2.52 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.89 Total: -12.04 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.84 Total: -44.35 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.42 Total: -9.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.94 -9.25 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226854319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.588 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds