Wall clock time and date at job start Tue Mar 31 2020 10:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39253 * 119.59418 * 2 1 4 4 C 1.36153 * 121.01761 * 180.25640 * 3 2 1 5 5 C 1.40505 * 119.75542 * 0.04266 * 4 3 2 6 6 N 1.33892 * 120.99693 * 179.97438 * 5 4 3 7 7 C 1.31684 * 121.40295 * 180.02562 * 6 5 4 8 8 O 1.35580 * 119.15727 * 179.97438 * 7 6 5 9 9 C 1.39641 * 121.68669 * 359.97438 * 7 6 5 10 10 C 1.37007 * 119.83028 * 0.02562 * 9 7 6 11 11 O 1.35593 * 120.93318 * 179.97438 * 10 9 7 12 12 C 1.42899 * 117.00065 * 5.94412 * 11 10 9 13 13 C 1.53933 * 113.73562 * 254.45495 * 12 11 10 14 14 N 1.47955 * 86.18188 * 221.92318 * 13 12 11 15 15 C 1.46900 * 111.00328 * 137.58471 * 14 13 12 16 16 C 1.50703 * 109.46776 * 70.63702 * 15 14 13 17 17 H 1.07994 * 120.00187 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99753 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99813 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47303 * 90.00047 * 20 18 16 22 22 H 1.48499 * 109.46702 * 209.99918 * 20 18 16 23 23 H 1.48499 * 109.47037 * 329.99701 * 20 18 16 24 24 C 1.47967 * 90.76409 * 24.69258 * 14 13 12 25 25 C 1.41487 * 119.10134 * 359.95727 * 5 4 3 26 26 C 1.36268 * 119.59209 * 180.26915 * 2 1 3 27 27 H 1.09001 * 109.47340 * 269.72410 * 1 2 3 28 28 H 1.09001 * 109.47243 * 29.72797 * 1 2 3 29 29 H 1.09000 * 109.47349 * 149.72928 * 1 2 3 30 30 H 1.08007 * 119.48525 * 0.27498 * 3 2 1 31 31 H 1.07999 * 120.12351 * 179.97438 * 4 3 2 32 32 H 0.96695 * 114.00404 * 270.01499 * 8 7 6 33 33 H 1.07999 * 120.08986 * 179.97438 * 9 7 6 34 34 H 1.08994 * 112.93505 * 26.16676 * 12 11 10 35 35 H 1.09004 * 113.75874 * 336.24437 * 13 12 11 36 36 H 1.08998 * 113.75582 * 107.60166 * 13 12 11 37 37 H 1.08992 * 109.47587 * 190.64309 * 15 14 13 38 38 H 1.09005 * 109.46414 * 310.64306 * 15 14 13 39 39 H 0.96996 * 119.99714 * 179.97438 * 19 18 16 40 40 H 1.09001 * 113.75552 * 220.99753 * 24 14 13 41 41 H 1.08993 * 113.75517 * 89.62775 * 24 14 13 42 42 H 1.07999 * 120.17754 * 359.70748 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.2109 0.0000 4 6 3.5557 1.2447 -0.0052 5 6 4.2831 0.0426 -0.0116 6 7 5.6220 0.0469 -0.0174 7 6 6.3117 -1.0749 -0.0239 8 8 7.6663 -1.0175 -0.0300 9 6 5.6837 -2.3221 -0.0246 10 6 4.3156 -2.3962 -0.0189 11 8 3.6825 -3.5953 -0.0200 12 6 4.5001 -4.7607 0.1046 13 6 4.6652 -5.5452 -1.2095 14 7 4.4913 -6.7637 -0.3885 15 6 3.6163 -7.7323 -1.0624 16 6 4.3366 -8.3191 -2.2490 17 1 5.3437 -8.0044 -2.4791 18 6 3.7097 -9.2579 -3.0408 19 7 4.3385 -9.7704 -4.0759 20 14 1.9674 -9.8017 -2.6431 21 1 1.0012 -8.9235 -3.3503 22 1 1.7745 -11.2064 -3.0844 23 1 1.7417 -9.7076 -1.1784 24 6 3.7444 -5.9942 0.6310 25 6 3.5817 -1.1862 -0.0116 26 6 2.1798 -1.1849 -0.0056 27 1 -0.3634 -0.0049 1.0276 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3634 -0.8875 -0.5180 30 1 1.6396 2.1374 0.0045 31 1 4.0744 2.1920 -0.0056 32 1 8.0551 -0.9980 -0.9151 33 1 6.2747 -3.2260 -0.0304 34 1 5.4392 -4.5673 0.6230 35 1 3.8594 -5.3787 -1.9245 36 1 5.6559 -5.4531 -1.6544 37 1 3.3525 -8.5290 -0.3670 38 1 2.7099 -7.2295 -1.3998 39 1 3.8977 -10.4311 -4.6327 40 1 3.9996 -6.2608 1.6566 41 1 2.6694 -5.9591 0.4542 42 1 1.6361 -2.1181 -0.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226854319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:09 Heat of formation + Delta-G solvation = -8.295820 kcal Electronic energy + Delta-G solvation = -25250.872234 eV Core-core repulsion = 21582.789826 eV Total energy + Delta-G solvation = -3668.082408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40635 -41.17317 -39.46147 -39.00364 -36.94755 -34.99985 -33.64284 -32.48222 -31.59345 -31.19174 -27.74987 -27.54087 -27.06771 -25.14314 -23.80787 -23.51305 -22.61584 -21.08416 -20.30633 -19.13833 -19.03172 -18.57747 -18.06919 -17.01272 -16.80300 -16.57246 -16.30774 -16.02173 -15.49507 -15.29180 -15.23359 -15.08392 -14.84804 -14.54646 -14.43709 -13.98280 -13.85836 -13.74145 -13.36125 -13.13568 -12.91789 -12.73796 -12.68136 -12.33437 -12.28420 -12.01370 -11.94564 -11.83809 -11.61117 -11.44387 -10.85366 -10.71056 -10.66221 -9.80490 -9.74384 -8.95597 -8.33859 -6.39281 -0.62854 -0.35322 0.89291 1.32381 1.34501 1.45141 1.69798 1.74597 2.30448 2.54441 2.95007 2.97407 3.03009 3.23190 3.44604 3.53974 3.64947 3.73338 3.83424 4.03846 4.12599 4.31374 4.34257 4.37030 4.40948 4.48586 4.54932 4.57890 4.71449 4.75134 4.80495 4.87563 4.88268 4.96623 4.99219 5.20656 5.25235 5.30610 5.32176 5.57221 5.63426 5.84270 5.85787 6.03025 6.40138 6.55689 6.66681 6.83342 7.24805 8.82731 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.003264 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.898977 B = 8576.408415 C = 9847.445189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.071 4.071 4 C -0.114 4.114 5 C 0.154 3.846 6 N -0.541 5.541 7 C 0.373 3.627 8 O -0.488 6.488 9 C -0.299 4.299 10 C 0.201 3.799 11 O -0.294 6.294 12 C 0.061 3.939 13 C 0.004 3.996 14 N -0.482 5.482 15 C 0.142 3.858 16 C -0.525 4.525 17 H 0.036 0.964 18 C 0.009 3.991 19 N -0.946 5.946 20 Si 0.948 3.052 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.246 1.246 24 C 0.010 3.990 25 C -0.143 4.143 26 C -0.090 4.090 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.424 0.576 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.000 1.000 39 H 0.268 0.732 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 23.217 10.445 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.091 4.091 4 C -0.133 4.133 5 C 0.033 3.967 6 N -0.265 5.265 7 C 0.181 3.819 8 O -0.299 6.299 9 C -0.322 4.322 10 C 0.146 3.854 11 O -0.203 6.203 12 C 0.005 3.995 13 C -0.125 4.125 14 N -0.206 5.206 15 C 0.014 3.986 16 C -0.563 4.563 17 H 0.054 0.946 18 C -0.189 4.189 19 N -0.586 5.586 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.169 1.169 24 C -0.118 4.118 25 C -0.145 4.145 26 C -0.108 4.108 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.185 0.815 31 H 0.170 0.830 32 H 0.286 0.714 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.077 0.923 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.807 23.402 11.060 26.527 hybrid contribution -0.797 -1.403 -1.247 2.039 sum -6.604 21.999 9.813 24.977 Atomic orbital electron populations 1.20883 0.88537 1.04027 1.03517 1.20043 0.98165 0.92306 0.99090 1.21246 0.93336 0.99013 0.95483 1.20958 0.94267 0.96289 1.01754 1.18712 0.87787 0.92952 0.97240 1.67601 1.07896 1.31094 1.19920 1.18988 0.84849 0.86965 0.91133 1.84654 1.13459 1.95744 1.36008 1.21906 0.94203 1.00508 1.15567 1.19031 0.90865 0.85751 0.89723 1.86118 1.36863 1.12058 1.85278 1.24869 0.95954 0.81088 0.97634 1.24250 1.02721 0.89844 0.95713 1.68440 1.36408 1.06989 1.08807 1.20463 0.91499 0.92873 0.93777 1.21174 1.01275 1.23466 1.10386 0.94596 1.25888 1.02816 0.95796 0.94370 1.70043 1.39988 1.30376 1.18181 0.85697 0.79095 0.77911 0.80185 1.19151 1.20596 1.16945 1.24332 0.98443 0.89285 0.99764 1.18506 0.95847 0.90969 1.09220 1.20924 0.91486 0.99644 0.98787 0.89837 0.89394 0.91406 0.81514 0.83014 0.71358 0.82361 0.85395 0.91710 0.89596 0.94526 0.98194 0.92279 0.86196 0.90108 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.99 71.23 0.71 -0.51 16 2 C -0.10 -1.62 5.85 -20.08 -0.12 -1.73 16 3 C -0.07 -1.06 9.58 22.03 0.21 -0.84 16 4 C -0.11 -2.21 9.98 22.34 0.22 -1.99 16 5 C 0.15 3.98 6.60 40.18 0.27 4.25 16 6 N -0.54 -15.06 10.37 -302.36 -3.14 -18.19 16 7 C 0.37 9.73 7.71 85.05 0.66 10.39 16 8 O -0.49 -10.56 13.54 -88.88 -1.20 -11.77 16 9 C -0.30 -7.72 8.94 22.32 0.20 -7.52 16 10 C 0.20 5.49 6.70 22.79 0.15 5.65 16 11 O -0.29 -8.24 9.46 -89.02 -0.84 -9.09 16 12 C 0.06 1.70 3.86 31.24 0.12 1.82 16 13 C 0.00 0.14 7.29 86.41 0.63 0.77 16 14 N -0.48 -19.00 6.25 -916.38 -5.73 -24.73 16 15 C 0.14 6.58 3.65 85.56 0.31 6.89 16 16 C -0.52 -30.01 9.40 25.60 0.24 -29.77 16 17 H 0.04 2.30 8.04 -2.91 -0.02 2.27 16 18 C 0.01 0.53 5.47 84.66 0.46 0.99 16 19 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 20 Si 0.95 43.04 27.47 68.60 1.88 44.92 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.25 -10.28 6.54 99.48 0.65 -9.62 16 24 C 0.01 0.30 7.81 86.41 0.67 0.97 16 25 C -0.14 -3.76 5.75 -21.19 -0.12 -3.88 16 26 C -0.09 -2.00 9.19 22.28 0.20 -1.80 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.07 0.78 8.07 -2.39 -0.02 0.76 16 30 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.42 4.90 9.06 -74.06 -0.67 4.23 16 33 H 0.16 3.69 6.00 -2.91 -0.02 3.67 16 34 H 0.13 3.13 6.08 -2.39 -0.01 3.12 16 35 H 0.06 2.51 7.78 -2.38 -0.02 2.49 16 36 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 38 H 0.00 0.02 7.11 -2.38 -0.02 0.00 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.08 2.33 7.79 -2.39 -0.02 2.31 16 42 H 0.13 2.92 7.66 -2.91 -0.02 2.89 16 Total: -1.00 -73.32 351.29 -3.57 -76.89 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.33 Total: 16.66 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.83 Total: -16.33 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -8.57 Total: -101.28 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -2.05 Total: -20.85 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Total: -73.32 -3.57 -76.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226854319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.594 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds