Wall clock time and date at job start Tue Mar 31 2020 10:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36205 * 120.12120 * 2 1 4 4 C 1.39206 * 121.00807 * 179.72299 * 3 2 1 5 5 C 1.36292 * 120.82043 * 0.27325 * 4 3 2 6 6 C 1.40142 * 119.64760 * 0.02562 * 5 4 3 7 7 C 1.41537 * 121.29901 * 180.02562 * 6 5 4 8 8 O 1.35590 * 120.93154 * 359.95644 * 7 6 5 9 9 C 1.42899 * 117.00010 * 185.30277 * 8 7 6 10 10 H 1.09004 * 110.64274 * 38.07531 * 9 8 7 11 11 C 1.55154 * 110.72315 * 161.41607 * 9 8 7 12 12 C 1.54902 * 101.58278 * 153.86330 * 11 9 8 13 13 N 1.47428 * 104.83520 * 322.99010 * 12 11 9 14 14 C 1.36934 * 125.64894 * 204.09006 * 13 12 11 15 15 H 1.08004 * 119.99834 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00325 * 0.04684 * 14 13 12 17 17 N 1.31619 * 119.99716 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00086 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47304 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47486 * 119.99904 * 18 16 14 21 21 H 1.48501 * 109.46919 * 239.99787 * 18 16 14 22 22 C 1.47026 * 108.69996 * 24.12855 * 13 12 11 23 23 C 1.37007 * 118.13658 * 179.97438 * 7 6 5 24 24 C 1.39650 * 119.83170 * 0.08054 * 23 7 6 25 25 O 1.35588 * 119.14947 * 179.97438 * 24 23 7 26 26 N 1.31680 * 121.69534 * 359.93835 * 24 23 7 27 27 C 1.33896 * 121.39853 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.46662 * 90.00494 * 1 2 3 29 29 H 1.08999 * 109.46929 * 210.00164 * 1 2 3 30 30 H 1.08994 * 109.47407 * 329.99706 * 1 2 3 31 31 H 1.07992 * 119.49252 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.58775 * 180.25769 * 4 3 2 33 33 H 1.08006 * 120.17539 * 179.97438 * 5 4 3 34 34 H 1.09001 * 111.00223 * 271.94017 * 11 9 8 35 35 H 1.09006 * 111.00113 * 35.78663 * 11 9 8 36 36 H 1.08999 * 110.36737 * 204.15070 * 12 11 9 37 37 H 1.08995 * 110.36886 * 81.83033 * 12 11 9 38 38 H 0.96999 * 120.00043 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.87999 * 239.52012 * 22 13 12 40 40 H 1.08998 * 110.00977 * 118.42823 * 22 13 12 41 41 H 1.07996 * 120.08270 * 180.02562 * 23 7 6 42 42 H 0.96700 * 114.00187 * 269.97713 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1781 0.0000 4 6 3.5824 1.1997 0.0058 5 6 4.2987 0.0402 0.0060 6 6 3.6269 -1.1897 -0.0002 7 6 4.3358 -2.4148 0.0004 8 8 5.6915 -2.4355 0.0061 9 6 6.3213 -3.7128 -0.1115 10 1 5.7735 -4.3489 -0.8068 11 6 7.8006 -3.5570 -0.5529 12 6 8.4353 -4.8459 0.0261 13 7 7.7525 -5.0565 1.3157 14 6 8.2550 -5.7567 2.3798 15 1 7.6737 -5.8546 3.2847 16 6 9.5116 -6.3404 2.2956 17 7 10.2200 -6.2212 1.1927 18 14 10.1967 -7.2961 3.7470 19 1 9.2114 -7.2827 4.8580 20 1 10.4609 -8.6984 3.3360 21 1 11.4626 -6.6665 4.2010 22 6 6.4423 -4.3910 1.2695 23 6 3.6137 -3.5791 -0.0054 24 6 2.2181 -3.5309 -0.0132 25 8 1.5172 -4.6916 -0.0194 26 7 1.5653 -2.3873 -0.0141 27 6 2.2120 -1.2149 -0.0080 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6442 2.1097 -0.0004 32 1 4.1010 2.1470 0.0099 33 1 5.3784 0.0691 0.0101 34 1 7.8837 -3.5346 -1.6395 35 1 8.2489 -2.6676 -0.1100 36 1 9.5049 -4.7051 0.1818 37 1 8.2560 -5.6895 -0.6403 38 1 11.0983 -6.6287 1.1340 39 1 6.3797 -3.6408 2.0577 40 1 5.6464 -5.1254 1.3928 41 1 4.1226 -4.5316 -0.0047 42 1 1.3186 -5.0265 -0.9045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227919349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:01 Heat of formation + Delta-G solvation = 6.340448 kcal Electronic energy + Delta-G solvation = -25708.326513 eV Core-core repulsion = 22040.878781 eV Total energy + Delta-G solvation = -3667.447732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30439 -39.28964 -38.43728 -36.66387 -35.64173 -33.62734 -32.34351 -30.70237 -30.08341 -29.33465 -27.57240 -26.90239 -24.85900 -23.74461 -23.58136 -21.27023 -20.60343 -20.29106 -19.20300 -18.04084 -17.47835 -17.27758 -16.69760 -15.75289 -15.47663 -15.15191 -14.80689 -14.74607 -14.22564 -14.18459 -13.94598 -13.74204 -13.41297 -12.82078 -12.63164 -12.60895 -12.24381 -12.06850 -11.88769 -11.64438 -11.55140 -11.43170 -11.32335 -11.07987 -10.87797 -10.75191 -10.53192 -10.14455 -9.95894 -9.73146 -9.57833 -9.42348 -8.82475 -8.76510 -7.92393 -6.98167 -5.76658 -3.19202 0.38114 0.65986 1.90987 2.73043 2.98934 3.35087 3.41110 3.43529 3.50487 3.95103 4.39802 4.45133 4.56908 4.64917 4.78633 4.96934 5.01753 5.10868 5.15423 5.26230 5.37157 5.39839 5.42998 5.50957 5.58569 5.59539 5.66170 5.69386 5.94623 6.04869 6.11026 6.19259 6.26164 6.33562 6.35107 6.37742 6.44308 6.51512 6.72443 7.28198 7.32122 7.43185 7.51362 7.70891 7.86042 8.21784 9.09924 9.69841 10.31761 11.28012 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.003146 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.383618 B = 8897.875632 C = 9492.542272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.078 4.078 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.069 4.069 6 C -0.130 4.130 7 C 0.218 3.782 8 O -0.289 6.289 9 C 0.066 3.934 10 H 0.082 0.918 11 C -0.133 4.133 12 C 0.152 3.848 13 N -0.600 5.600 14 C -0.225 4.225 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.918 3.082 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.118 3.882 23 C -0.299 4.299 24 C 0.382 3.618 25 O -0.481 6.481 26 N -0.525 5.525 27 C 0.181 3.819 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.151 0.849 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 12.513 -7.156 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.079 4.079 3 C -0.111 4.111 4 C -0.153 4.153 5 C -0.088 4.088 6 C -0.133 4.133 7 C 0.163 3.837 8 O -0.198 6.198 9 C 0.010 3.990 10 H 0.100 0.900 11 C -0.172 4.172 12 C 0.028 3.972 13 N -0.327 5.327 14 C -0.353 4.353 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.748 3.252 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.216 1.216 22 C -0.009 4.009 23 C -0.321 4.321 24 C 0.190 3.810 25 O -0.288 6.288 26 N -0.249 5.249 27 C 0.060 3.940 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.169 0.831 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -15.835 12.613 -6.472 21.254 hybrid contribution 1.151 -1.024 0.241 1.559 sum -14.684 11.589 -6.231 19.717 Atomic orbital electron populations 1.20629 0.90052 1.02968 1.02338 1.19447 0.96631 0.90398 1.01386 1.20804 0.94285 0.97421 0.98542 1.20834 0.93969 0.98363 1.02115 1.20946 1.00588 0.90798 0.96460 1.18313 0.93515 0.92571 1.08872 1.18897 0.83911 0.92512 0.88367 1.86104 1.14558 1.34219 1.84898 1.23898 0.94747 0.81465 0.98901 0.90042 1.23229 0.91049 1.02719 1.00198 1.22028 1.00551 0.89627 0.85036 1.44373 1.13275 1.61575 1.13501 1.19137 0.99212 1.24742 0.92183 0.90237 1.24803 0.97000 1.00877 0.97796 1.69748 1.12641 1.49095 1.25648 0.85950 0.78774 0.79269 0.81224 1.20421 1.21615 1.21599 1.21723 0.90375 0.95259 0.93513 1.21901 0.94831 0.99786 1.15628 1.18908 0.86217 0.84994 0.90894 1.84730 1.75796 1.34461 1.33848 1.67523 1.40370 0.97222 1.19746 1.18121 0.88063 0.91251 0.96600 0.91317 0.90402 0.91841 0.85373 0.85439 0.84645 0.91234 0.90568 0.86648 0.96379 0.93564 0.94642 0.95275 0.83111 0.73910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.79 36.00 0.35 -0.63 16 2 C -0.08 -0.91 5.89 -104.52 -0.62 -1.53 16 3 C -0.09 -0.89 9.58 -39.95 -0.38 -1.28 16 4 C -0.13 -1.37 9.96 -39.92 -0.40 -1.77 16 5 C -0.07 -0.87 9.58 -39.57 -0.38 -1.25 16 6 C -0.13 -1.90 5.75 -106.67 -0.61 -2.51 16 7 C 0.22 3.39 6.64 -38.77 -0.26 3.14 16 8 O -0.29 -4.76 9.18 -18.47 -0.17 -4.93 16 9 C 0.07 1.14 2.78 -24.90 -0.07 1.07 16 10 H 0.08 1.30 6.62 -51.93 -0.34 0.95 16 11 C -0.13 -2.43 6.81 -24.59 -0.17 -2.60 16 12 C 0.15 3.54 5.89 -2.53 -0.01 3.53 16 13 N -0.60 -15.14 3.39 -170.07 -0.58 -15.72 16 14 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 15 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -26.19 10.09 55.49 0.56 -25.63 16 18 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 C 0.12 2.47 6.53 -3.06 -0.02 2.45 16 23 C -0.30 -4.45 8.72 -39.50 -0.34 -4.80 16 24 C 0.38 5.51 7.71 -17.09 -0.13 5.38 16 25 O -0.48 -5.92 13.54 -18.46 -0.25 -6.17 16 26 N -0.52 -7.82 9.44 -11.13 -0.11 -7.92 16 27 C 0.18 2.59 6.58 -84.88 -0.56 2.04 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.85 7.56 -51.93 -0.39 0.45 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.14 1.62 7.66 -52.48 -0.40 1.22 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.12 3.02 5.87 -51.93 -0.31 2.71 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 40 H 0.03 0.61 7.48 -51.93 -0.39 0.22 16 41 H 0.15 2.21 5.42 -52.49 -0.28 1.93 16 42 H 0.40 2.75 9.06 45.56 0.41 3.16 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -31.87 345.12 -8.84 -40.71 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.62 Total: 3.16 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.85 Total: -5.47 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.12 Total: -49.27 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.42 Total: -11.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.87 -8.84 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227919349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.051 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds