Wall clock time and date at job start Tue Mar 31 2020 10:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36205 * 120.12120 * 2 1 4 4 C 1.39206 * 121.00807 * 179.72299 * 3 2 1 5 5 C 1.36292 * 120.82043 * 0.27325 * 4 3 2 6 6 C 1.40142 * 119.64760 * 0.02562 * 5 4 3 7 7 C 1.41537 * 121.29901 * 180.02562 * 6 5 4 8 8 O 1.35590 * 120.93154 * 359.95644 * 7 6 5 9 9 C 1.42899 * 117.00010 * 185.30277 * 8 7 6 10 10 H 1.09004 * 110.64274 * 38.07531 * 9 8 7 11 11 C 1.55154 * 110.72315 * 161.41607 * 9 8 7 12 12 C 1.54902 * 101.58278 * 153.86330 * 11 9 8 13 13 N 1.47428 * 104.83520 * 322.99010 * 12 11 9 14 14 C 1.36934 * 125.64894 * 204.09006 * 13 12 11 15 15 H 1.08004 * 119.99834 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00325 * 0.04684 * 14 13 12 17 17 N 1.31619 * 119.99716 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00086 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47304 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47486 * 119.99904 * 18 16 14 21 21 H 1.48501 * 109.46919 * 239.99787 * 18 16 14 22 22 C 1.47026 * 108.69996 * 24.12855 * 13 12 11 23 23 C 1.37007 * 118.13658 * 179.97438 * 7 6 5 24 24 C 1.39650 * 119.83170 * 0.08054 * 23 7 6 25 25 O 1.35588 * 119.14947 * 179.97438 * 24 23 7 26 26 N 1.31680 * 121.69534 * 359.93835 * 24 23 7 27 27 C 1.33896 * 121.39853 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.46662 * 90.00494 * 1 2 3 29 29 H 1.08999 * 109.46929 * 210.00164 * 1 2 3 30 30 H 1.08994 * 109.47407 * 329.99706 * 1 2 3 31 31 H 1.07992 * 119.49252 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.58775 * 180.25769 * 4 3 2 33 33 H 1.08006 * 120.17539 * 179.97438 * 5 4 3 34 34 H 1.09001 * 111.00223 * 271.94017 * 11 9 8 35 35 H 1.09006 * 111.00113 * 35.78663 * 11 9 8 36 36 H 1.08999 * 110.36737 * 204.15070 * 12 11 9 37 37 H 1.08995 * 110.36886 * 81.83033 * 12 11 9 38 38 H 0.96999 * 120.00043 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.87999 * 239.52012 * 22 13 12 40 40 H 1.08998 * 110.00977 * 118.42823 * 22 13 12 41 41 H 1.07996 * 120.08270 * 180.02562 * 23 7 6 42 42 H 0.96700 * 114.00187 * 269.97713 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1781 0.0000 4 6 3.5824 1.1997 0.0058 5 6 4.2987 0.0402 0.0060 6 6 3.6269 -1.1897 -0.0002 7 6 4.3358 -2.4148 0.0004 8 8 5.6915 -2.4355 0.0061 9 6 6.3213 -3.7128 -0.1115 10 1 5.7735 -4.3489 -0.8068 11 6 7.8006 -3.5570 -0.5529 12 6 8.4353 -4.8459 0.0261 13 7 7.7525 -5.0565 1.3157 14 6 8.2550 -5.7567 2.3798 15 1 7.6737 -5.8546 3.2847 16 6 9.5116 -6.3404 2.2956 17 7 10.2200 -6.2212 1.1927 18 14 10.1967 -7.2961 3.7470 19 1 9.2114 -7.2827 4.8580 20 1 10.4609 -8.6984 3.3360 21 1 11.4626 -6.6665 4.2010 22 6 6.4423 -4.3910 1.2695 23 6 3.6137 -3.5791 -0.0054 24 6 2.2181 -3.5309 -0.0132 25 8 1.5172 -4.6916 -0.0194 26 7 1.5653 -2.3873 -0.0141 27 6 2.2120 -1.2149 -0.0080 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6442 2.1097 -0.0004 32 1 4.1010 2.1470 0.0099 33 1 5.3784 0.0691 0.0101 34 1 7.8837 -3.5346 -1.6395 35 1 8.2489 -2.6676 -0.1100 36 1 9.5049 -4.7051 0.1818 37 1 8.2560 -5.6895 -0.6403 38 1 11.0983 -6.6287 1.1340 39 1 6.3797 -3.6408 2.0577 40 1 5.6464 -5.1254 1.3928 41 1 4.1226 -4.5316 -0.0047 42 1 1.3186 -5.0265 -0.9045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227919349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:01 Heat of formation + Delta-G solvation = -15.637033 kcal Electronic energy + Delta-G solvation = -25709.279528 eV Core-core repulsion = 22040.878781 eV Total energy + Delta-G solvation = -3668.400747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36986 -40.56418 -39.38744 -38.27382 -36.64528 -34.77611 -34.08748 -31.82328 -31.25362 -30.91490 -29.20629 -27.73210 -26.69567 -24.92014 -24.61102 -22.54792 -22.13077 -21.71680 -20.29488 -19.18555 -19.00871 -18.47556 -18.00776 -16.99135 -16.77209 -16.65407 -16.22889 -15.77864 -15.59882 -15.27937 -15.21854 -14.91778 -14.66113 -14.36251 -13.93648 -13.72540 -13.54421 -13.34157 -13.02400 -12.98108 -12.90287 -12.72787 -12.49469 -12.38090 -12.29438 -12.16329 -12.09991 -11.99539 -11.84365 -11.50880 -10.82231 -10.65548 -10.54284 -9.79103 -9.00518 -8.90536 -7.85035 -5.30554 -0.61261 -0.32973 0.90139 1.45624 1.45891 1.56433 1.72226 1.80938 2.45009 2.54573 2.96480 3.26235 3.40753 3.47549 3.57518 3.60888 3.69654 3.83037 3.88580 3.96838 4.09856 4.32059 4.36406 4.40780 4.50155 4.57303 4.61703 4.71668 4.79888 4.86862 4.88474 4.91480 4.91920 5.03427 5.26923 5.34975 5.39152 5.47052 5.51087 5.51559 5.70030 5.89572 6.05521 6.22942 6.56895 6.83647 7.03148 7.67046 8.28976 9.17342 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.003146 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.383618 B = 8897.875632 C = 9492.542272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.090 4.090 3 C -0.080 4.080 4 C -0.118 4.118 5 C -0.092 4.092 6 C -0.144 4.144 7 C 0.201 3.799 8 O -0.291 6.291 9 C 0.083 3.917 10 H 0.100 0.900 11 C -0.118 4.118 12 C 0.154 3.846 13 N -0.622 5.622 14 C -0.246 4.246 15 H 0.077 0.923 16 C -0.060 4.060 17 N -0.945 5.945 18 Si 0.982 3.018 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.117 3.883 23 C -0.303 4.303 24 C 0.374 3.626 25 O -0.488 6.488 26 N -0.532 5.532 27 C 0.157 3.843 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.003 0.997 38 H 0.251 0.749 39 H 0.023 0.977 40 H 0.031 0.969 41 H 0.149 0.851 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 14.643 -7.481 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.099 4.099 4 C -0.136 4.136 5 C -0.111 4.111 6 C -0.147 4.147 7 C 0.146 3.854 8 O -0.201 6.201 9 C 0.027 3.973 10 H 0.118 0.882 11 C -0.156 4.156 12 C 0.029 3.971 13 N -0.349 5.349 14 C -0.374 4.374 15 H 0.095 0.905 16 C -0.253 4.253 17 N -0.594 5.594 18 Si 0.810 3.190 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.009 4.009 23 C -0.326 4.326 24 C 0.181 3.819 25 O -0.298 6.298 26 N -0.256 5.256 27 C 0.036 3.964 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.021 0.979 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.166 0.834 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -17.334 14.755 -6.818 23.763 hybrid contribution 1.489 -1.575 0.341 2.193 sum -15.846 13.181 -6.477 21.605 Atomic orbital electron populations 1.20645 0.88601 1.03327 1.03017 1.19832 0.97858 0.90100 1.01345 1.21263 0.94291 0.98225 0.96144 1.21271 0.94358 0.98821 0.99151 1.21088 1.00882 0.91018 0.98108 1.18523 0.93830 0.92960 1.09388 1.19087 0.83309 0.93415 0.89558 1.86071 1.15405 1.33040 1.85548 1.23580 0.94780 0.82101 0.96808 0.88180 1.23025 0.90957 0.99719 1.01923 1.21818 0.99225 0.91563 0.84472 1.44643 1.15051 1.61631 1.13595 1.19434 0.99678 1.25270 0.93025 0.90510 1.25614 0.97290 1.01996 1.00360 1.69978 1.12638 1.49646 1.27144 0.84966 0.77951 0.77636 0.78475 1.19494 1.21532 1.21468 1.21797 0.88610 0.94901 0.95582 1.21915 0.95224 0.99506 1.15928 1.18962 0.86204 0.85494 0.91216 1.84681 1.75445 1.33808 1.35909 1.67570 1.40671 0.97615 1.19768 1.18560 0.88310 0.92029 0.97514 0.90412 0.92287 0.89216 0.81482 0.82122 0.84669 0.87873 0.90712 0.89745 0.97883 0.93920 0.95893 0.95127 0.83364 0.71420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.79 71.24 0.70 -0.95 16 2 C -0.09 -1.91 5.89 -19.80 -0.12 -2.03 16 3 C -0.08 -1.26 9.58 22.03 0.21 -1.05 16 4 C -0.12 -2.01 9.96 22.05 0.22 -1.79 16 5 C -0.09 -2.17 9.58 22.28 0.21 -1.96 16 6 C -0.14 -4.13 5.75 -21.19 -0.12 -4.26 16 7 C 0.20 6.23 6.64 22.79 0.15 6.38 16 8 O -0.29 -9.51 9.18 -88.99 -0.82 -10.32 16 9 C 0.08 2.88 2.78 31.78 0.09 2.97 16 10 H 0.10 3.10 6.62 -2.38 -0.02 3.09 16 11 C -0.12 -4.24 6.81 31.98 0.22 -4.02 16 12 C 0.15 7.33 5.89 86.85 0.51 7.84 16 13 N -0.62 -32.18 3.39 -691.99 -2.35 -34.53 16 14 C -0.25 -13.87 10.27 84.03 0.86 -13.01 16 15 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 16 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 17 N -0.94 -54.96 10.09 21.65 0.22 -54.74 16 18 Si 0.98 45.39 29.55 68.60 2.03 47.42 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 C 0.12 5.01 6.53 86.73 0.57 5.57 16 23 C -0.30 -9.09 8.72 22.32 0.19 -8.89 16 24 C 0.37 10.78 7.71 85.06 0.66 11.44 16 25 O -0.49 -11.86 13.54 -88.97 -1.20 -13.07 16 26 N -0.53 -15.70 9.44 -302.34 -2.85 -18.55 16 27 C 0.16 4.36 6.58 40.18 0.26 4.62 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.21 7.56 -2.39 -0.02 1.19 16 30 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.14 3.10 7.66 -2.91 -0.02 3.08 16 34 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 36 H 0.08 4.57 5.87 -2.39 -0.01 4.56 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.02 1.04 8.06 -2.39 -0.02 1.02 16 40 H 0.03 1.30 7.48 -2.39 -0.02 1.28 16 41 H 0.15 4.39 5.42 -2.91 -0.02 4.37 16 42 H 0.42 5.52 9.06 -74.06 -0.67 4.85 16 Total: -1.00 -70.74 345.12 0.49 -70.25 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.39 Total: 15.57 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 5.08 Total: -2.01 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -4.99 Total: -107.83 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -2.02 Total: -23.39 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -70.74 0.49 -70.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227919349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.611 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds