Wall clock time and date at job start Tue Mar 31 2020 11:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30834 * 125.89937 * 2 1 4 4 N 1.40090 * 108.20719 * 179.81538 * 3 2 1 5 5 C 1.46503 * 126.03615 * 180.23071 * 4 3 2 6 6 C 1.34939 * 107.92333 * 0.36159 * 4 3 2 7 7 C 1.35313 * 107.74969 * 359.63950 * 6 4 3 8 8 C 1.50696 * 126.04414 * 180.20142 * 7 6 4 9 9 H 1.09000 * 109.47669 * 215.03284 * 8 7 6 10 10 C 1.53004 * 109.47046 * 95.02947 * 8 7 6 11 11 O 1.42901 * 109.47258 * 335.03355 * 8 7 6 12 12 C 1.35662 * 116.99895 * 204.90917 * 11 8 7 13 13 C 1.39163 * 119.90517 * 174.27242 * 12 11 8 14 14 C 1.37589 * 120.09788 * 179.71943 * 13 12 11 15 15 C 1.39956 * 119.90278 * 0.56726 * 14 13 12 16 16 C 1.47568 * 120.09453 * 179.67934 * 15 14 13 17 17 O 1.21828 * 119.99556 * 180.02562 * 16 15 14 18 18 C 1.41753 * 120.00168 * 0.02678 * 16 15 14 19 19 H 1.08004 * 120.00218 * 359.97438 * 18 16 15 20 20 C 1.40342 * 119.99949 * 179.97438 * 18 16 15 21 21 N 1.30534 * 120.00307 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99939 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46956 * 60.00264 * 22 20 18 24 24 H 1.48497 * 109.47270 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47104 * 300.00116 * 22 20 18 26 26 C 1.39950 * 119.80831 * 359.70389 * 15 14 13 27 27 C 1.37595 * 119.90959 * 359.97438 * 26 15 14 28 28 H 1.09007 * 109.47159 * 269.95790 * 1 2 3 29 29 H 1.09001 * 109.47199 * 29.95848 * 1 2 3 30 30 H 1.08998 * 109.46887 * 149.95930 * 1 2 3 31 31 H 1.08993 * 109.47173 * 270.15259 * 5 4 3 32 32 H 1.09005 * 109.47313 * 30.15772 * 5 4 3 33 33 H 1.09000 * 109.46976 * 150.15059 * 5 4 3 34 34 H 1.08007 * 126.12618 * 179.90691 * 6 4 3 35 35 H 1.08999 * 109.46825 * 60.00309 * 10 8 7 36 36 H 1.08996 * 109.47253 * 180.02562 * 10 8 7 37 37 H 1.08995 * 109.46913 * 300.00252 * 10 8 7 38 38 H 1.08009 * 119.95063 * 359.97438 * 13 12 11 39 39 H 1.07999 * 120.05783 * 180.25105 * 14 13 12 40 40 H 0.96991 * 119.99882 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.04280 * 179.97438 * 26 15 14 42 42 H 1.07994 * 119.95220 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6088 0.6341 0.0043 5 6 4.7899 1.5008 0.0105 6 6 3.6142 -0.7153 -0.0013 7 6 2.3272 -1.1330 -0.0007 8 6 1.8600 -2.5657 -0.0015 9 1 0.9469 -2.6499 -0.5908 10 6 1.5826 -3.0125 1.4354 11 8 2.8731 -3.3969 -0.5714 12 6 2.4697 -4.5682 -1.1244 13 6 3.3858 -5.3676 -1.8013 14 6 2.9823 -6.5591 -2.3587 15 6 1.6458 -6.9610 -2.2544 16 6 1.2069 -8.2347 -2.8567 17 8 0.0430 -8.5825 -2.7652 18 6 2.1396 -9.0534 -3.5416 19 1 3.1715 -8.7448 -3.6231 20 6 1.7223 -10.2649 -4.1140 21 7 0.4754 -10.6382 -4.0152 22 14 2.9514 -11.3434 -5.0173 23 1 4.0380 -11.7417 -4.0869 24 1 2.2647 -12.5585 -5.5246 25 1 3.5285 -10.5878 -6.1579 26 6 0.7266 -6.1512 -1.5776 27 6 1.1400 -4.9644 -1.0174 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.0851 1.7200 -1.0155 32 1 4.5552 2.4312 0.5277 33 1 5.6082 0.9962 0.5242 34 1 4.4892 -1.3485 -0.0013 35 1 0.8098 -2.3785 1.8701 36 1 1.2451 -4.0488 1.4349 37 1 2.4957 -2.9283 2.0247 38 1 4.4160 -5.0543 -1.8857 39 1 3.6947 -7.1810 -2.8804 40 1 0.1870 -11.4753 -4.4111 41 1 -0.3058 -6.4575 -1.4952 42 1 0.4313 -4.3388 -0.4954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233519058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:04 Heat of formation + Delta-G solvation = 21.229733 kcal Electronic energy + Delta-G solvation = -24849.102147 eV Core-core repulsion = 21182.300063 eV Total energy + Delta-G solvation = -3666.802084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.54947 -39.71367 -37.58469 -35.75360 -34.40116 -32.70058 -32.33025 -30.57257 -30.08599 -29.30715 -28.87257 -26.62185 -25.76583 -23.66684 -22.44860 -21.94745 -20.62060 -19.63115 -19.51312 -17.70085 -17.08027 -16.51813 -15.84883 -15.59428 -15.28382 -14.97783 -14.56438 -14.34494 -13.96876 -13.80757 -13.71468 -13.35500 -13.20445 -12.88795 -12.71931 -12.55233 -12.48177 -12.34783 -12.28647 -12.08494 -11.75667 -11.67630 -11.29358 -11.15301 -11.04738 -10.76566 -10.51149 -10.36189 -10.33553 -9.90433 -9.41196 -8.95928 -8.56331 -8.38652 -7.46826 -7.42425 -6.29292 -4.89554 1.67573 1.88819 2.03967 2.26786 2.48528 3.07519 3.12870 3.14768 3.41956 4.01161 4.05899 4.19191 4.65907 4.66934 4.74575 4.82073 4.85117 5.06303 5.07242 5.13880 5.16359 5.37235 5.41207 5.45863 5.55102 5.62348 5.71729 5.75147 5.83342 5.88904 5.98849 6.06097 6.15736 6.17206 6.37369 6.43959 6.67244 6.78295 6.89658 7.07310 7.25779 7.38813 7.41981 7.50672 7.89794 8.04163 8.80038 8.85828 10.32444 10.54661 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.002523 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.618425 B =11095.095539 C =11741.978727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.088 3.912 3 N -0.299 5.299 4 N -0.380 5.380 5 C 0.103 3.897 6 C 0.085 3.915 7 C -0.237 4.237 8 C 0.166 3.834 9 H 0.079 0.921 10 C -0.171 4.171 11 O -0.314 6.314 12 C 0.116 3.884 13 C -0.166 4.166 14 C -0.057 4.057 15 C -0.138 4.138 16 C 0.389 3.611 17 O -0.545 6.545 18 C -0.518 4.518 19 H 0.074 0.926 20 C 0.080 3.920 21 N -0.736 5.736 22 Si 0.906 3.094 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.055 4.055 27 C -0.221 4.221 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.178 0.822 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.274 0.726 41 H 0.127 0.873 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.005 19.796 8.560 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 N -0.122 5.122 4 N -0.161 5.161 5 C -0.038 4.038 6 C -0.061 4.061 7 C -0.248 4.248 8 C 0.108 3.892 9 H 0.097 0.903 10 C -0.229 4.229 11 O -0.229 6.229 12 C 0.072 3.928 13 C -0.185 4.185 14 C -0.075 4.075 15 C -0.139 4.139 16 C 0.286 3.714 17 O -0.435 6.435 18 C -0.549 4.549 19 H 0.092 0.908 20 C -0.144 4.144 21 N -0.365 5.365 22 Si 0.730 3.270 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.074 4.074 27 C -0.239 4.239 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.195 0.805 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.675 21.009 8.613 23.666 hybrid contribution 0.744 -1.288 -0.406 1.541 sum 7.418 19.721 8.207 22.612 Atomic orbital electron populations 1.20244 0.86556 1.03633 1.03141 1.22131 0.96865 0.89682 0.99216 1.77294 0.86438 1.22469 1.26026 1.48357 1.05507 1.04848 1.57406 1.21848 0.83612 0.94901 1.03431 1.22326 0.99592 0.84327 0.99894 1.19659 0.92520 0.94387 1.18250 1.20282 0.90373 0.84519 0.94008 0.90317 1.22329 1.02512 1.02190 0.95841 1.85929 1.35959 1.29197 1.71773 1.19075 0.93119 0.85822 0.94791 1.20323 0.98811 0.96059 1.03298 1.21380 0.96171 0.93933 0.96046 1.21798 0.93154 0.99675 0.99269 1.18062 0.89077 0.83140 0.81168 1.90500 1.20149 1.73218 1.59600 1.20903 0.97438 1.04098 1.32452 0.90830 1.26008 0.95320 0.98008 0.95027 1.69949 1.16072 1.19175 1.31262 0.86442 0.81086 0.79242 0.80250 1.18890 1.20298 1.18893 1.21188 1.00133 0.92134 0.93925 1.21129 0.94822 0.99987 1.07976 0.90281 0.90685 0.90235 0.90737 0.89375 0.89398 0.80472 0.91298 0.91329 0.91806 0.86167 0.84729 0.91463 0.85552 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.26 36.00 0.37 -0.30 16 2 C 0.09 1.04 7.22 -82.41 -0.59 0.44 16 3 N -0.30 -3.78 12.58 33.67 0.42 -3.36 16 4 N -0.38 -4.02 4.01 -68.16 -0.27 -4.30 16 5 C 0.10 0.61 11.47 59.85 0.69 1.30 16 6 C 0.08 0.93 10.91 -17.23 -0.19 0.75 16 7 C -0.24 -2.86 5.24 -105.05 -0.55 -3.41 16 8 C 0.17 2.06 2.47 -27.88 -0.07 1.99 16 9 H 0.08 0.98 5.57 -51.93 -0.29 0.69 16 10 C -0.17 -1.88 9.15 37.16 0.34 -1.54 16 11 O -0.31 -4.67 9.34 -18.69 -0.17 -4.84 16 12 C 0.12 1.99 6.62 -38.90 -0.26 1.73 16 13 C -0.17 -2.92 9.97 -39.48 -0.39 -3.32 16 14 C -0.06 -1.15 9.43 -39.18 -0.37 -1.52 16 15 C -0.14 -3.23 5.89 -104.81 -0.62 -3.85 16 16 C 0.39 11.04 6.91 -34.44 -0.24 10.80 16 17 O -0.54 -17.35 14.89 5.07 0.08 -17.27 16 18 C -0.52 -14.17 8.86 -37.45 -0.33 -14.50 16 19 H 0.07 1.81 6.01 -52.48 -0.32 1.49 16 20 C 0.08 2.14 5.50 -17.31 -0.10 2.04 16 21 N -0.74 -21.18 11.73 55.57 0.65 -20.53 16 22 Si 0.91 19.17 29.56 -169.99 -5.03 14.14 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.06 -1.17 9.59 -39.18 -0.38 -1.54 16 27 C -0.22 -3.85 8.21 -39.47 -0.32 -4.17 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.64 7.37 -51.93 -0.38 0.26 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.18 1.62 8.04 -52.48 -0.42 1.19 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.80 6.89 -51.93 -0.36 0.44 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.14 2.58 6.19 -52.49 -0.33 2.26 16 40 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 41 H 0.13 2.72 7.65 -52.49 -0.40 2.32 16 42 H 0.12 1.76 5.40 -52.49 -0.28 1.47 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -35.09 357.58 -7.24 -42.33 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.29 Total: 3.54 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.01 Total: -15.11 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: 0.80 Total: -28.18 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.10 Total: -22.12 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.09 -7.24 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233519058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.560 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds