Wall clock time and date at job start Tue Mar 31 2020 11:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30834 * 125.89937 * 2 1 4 4 N 1.40090 * 108.20719 * 179.81538 * 3 2 1 5 5 C 1.46503 * 126.03615 * 180.23071 * 4 3 2 6 6 C 1.34939 * 107.92333 * 0.36159 * 4 3 2 7 7 C 1.35313 * 107.74969 * 359.63950 * 6 4 3 8 8 C 1.50696 * 126.04414 * 180.20142 * 7 6 4 9 9 H 1.09000 * 109.47669 * 215.03284 * 8 7 6 10 10 C 1.53004 * 109.47046 * 95.02947 * 8 7 6 11 11 O 1.42901 * 109.47258 * 335.03355 * 8 7 6 12 12 C 1.35662 * 116.99895 * 204.90917 * 11 8 7 13 13 C 1.39163 * 119.90517 * 174.27242 * 12 11 8 14 14 C 1.37589 * 120.09788 * 179.71943 * 13 12 11 15 15 C 1.39956 * 119.90278 * 0.56726 * 14 13 12 16 16 C 1.47568 * 120.09453 * 179.67934 * 15 14 13 17 17 O 1.21828 * 119.99556 * 180.02562 * 16 15 14 18 18 C 1.41753 * 120.00168 * 0.02678 * 16 15 14 19 19 H 1.08004 * 120.00218 * 359.97438 * 18 16 15 20 20 C 1.40342 * 119.99949 * 179.97438 * 18 16 15 21 21 N 1.30534 * 120.00307 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99939 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46956 * 60.00264 * 22 20 18 24 24 H 1.48497 * 109.47270 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47104 * 300.00116 * 22 20 18 26 26 C 1.39950 * 119.80831 * 359.70389 * 15 14 13 27 27 C 1.37595 * 119.90959 * 359.97438 * 26 15 14 28 28 H 1.09007 * 109.47159 * 269.95790 * 1 2 3 29 29 H 1.09001 * 109.47199 * 29.95848 * 1 2 3 30 30 H 1.08998 * 109.46887 * 149.95930 * 1 2 3 31 31 H 1.08993 * 109.47173 * 270.15259 * 5 4 3 32 32 H 1.09005 * 109.47313 * 30.15772 * 5 4 3 33 33 H 1.09000 * 109.46976 * 150.15059 * 5 4 3 34 34 H 1.08007 * 126.12618 * 179.90691 * 6 4 3 35 35 H 1.08999 * 109.46825 * 60.00309 * 10 8 7 36 36 H 1.08996 * 109.47253 * 180.02562 * 10 8 7 37 37 H 1.08995 * 109.46913 * 300.00252 * 10 8 7 38 38 H 1.08009 * 119.95063 * 359.97438 * 13 12 11 39 39 H 1.07999 * 120.05783 * 180.25105 * 14 13 12 40 40 H 0.96991 * 119.99882 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.04280 * 179.97438 * 26 15 14 42 42 H 1.07994 * 119.95220 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6088 0.6341 0.0043 5 6 4.7899 1.5008 0.0105 6 6 3.6142 -0.7153 -0.0013 7 6 2.3272 -1.1330 -0.0007 8 6 1.8600 -2.5657 -0.0015 9 1 0.9469 -2.6499 -0.5908 10 6 1.5826 -3.0125 1.4354 11 8 2.8731 -3.3969 -0.5714 12 6 2.4697 -4.5682 -1.1244 13 6 3.3858 -5.3676 -1.8013 14 6 2.9823 -6.5591 -2.3587 15 6 1.6458 -6.9610 -2.2544 16 6 1.2069 -8.2347 -2.8567 17 8 0.0430 -8.5825 -2.7652 18 6 2.1396 -9.0534 -3.5416 19 1 3.1715 -8.7448 -3.6231 20 6 1.7223 -10.2649 -4.1140 21 7 0.4754 -10.6382 -4.0152 22 14 2.9514 -11.3434 -5.0173 23 1 4.0380 -11.7417 -4.0869 24 1 2.2647 -12.5585 -5.5246 25 1 3.5285 -10.5878 -6.1579 26 6 0.7266 -6.1512 -1.5776 27 6 1.1400 -4.9644 -1.0174 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.0851 1.7200 -1.0155 32 1 4.5552 2.4312 0.5277 33 1 5.6082 0.9962 0.5242 34 1 4.4892 -1.3485 -0.0013 35 1 0.8098 -2.3785 1.8701 36 1 1.2451 -4.0488 1.4349 37 1 2.4957 -2.9283 2.0247 38 1 4.4160 -5.0543 -1.8857 39 1 3.6947 -7.1810 -2.8804 40 1 0.1870 -11.4753 -4.4111 41 1 -0.3058 -6.4575 -1.4952 42 1 0.4313 -4.3388 -0.4954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233519058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:03 Heat of formation + Delta-G solvation = -0.444275 kcal Electronic energy + Delta-G solvation = -24850.042002 eV Core-core repulsion = 21182.300063 eV Total energy + Delta-G solvation = -3667.741939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.37720 -41.04165 -39.27072 -37.53620 -35.19307 -34.76098 -33.34299 -32.04836 -30.91988 -30.78401 -29.70921 -28.56714 -26.47598 -24.85948 -24.00172 -23.16128 -21.74094 -21.22238 -20.46546 -18.98301 -18.55981 -17.77128 -17.45191 -16.64984 -16.51807 -16.07698 -16.01453 -15.61251 -15.18911 -15.07805 -14.66120 -14.45704 -14.34086 -14.22802 -14.04862 -13.90763 -13.53574 -13.42771 -13.22274 -13.02626 -12.96232 -12.95354 -12.91281 -12.68917 -12.45385 -12.13556 -12.06712 -11.85029 -11.54079 -11.46492 -10.95667 -10.21203 -9.88881 -9.59150 -9.38454 -8.97649 -8.31902 -7.04846 0.28224 0.52665 0.87607 1.39737 1.42453 1.55067 1.60070 1.63390 2.22342 2.23053 2.26740 2.90060 3.49642 3.78154 3.85571 3.91972 3.98871 4.03101 4.19639 4.23592 4.27007 4.33793 4.42684 4.45567 4.51452 4.57913 4.67976 4.73341 4.75481 4.80077 4.90009 5.00125 5.05682 5.10821 5.16885 5.22315 5.26111 5.38860 5.50345 5.64536 5.80216 5.86805 6.01332 6.07910 6.53697 6.69851 6.72280 6.83586 8.27973 8.51673 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.002523 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.618425 B =11095.095539 C =11741.978727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.079 3.921 3 N -0.331 5.331 4 N -0.380 5.380 5 C 0.093 3.907 6 C 0.084 3.916 7 C -0.258 4.258 8 C 0.164 3.836 9 H 0.080 0.920 10 C -0.167 4.167 11 O -0.308 6.308 12 C 0.135 3.865 13 C -0.160 4.160 14 C -0.054 4.054 15 C -0.181 4.181 16 C 0.364 3.636 17 O -0.602 6.602 18 C -0.544 4.544 19 H 0.097 0.903 20 C 0.022 3.978 21 N -0.789 5.789 22 Si 0.995 3.005 23 H -0.250 1.250 24 H -0.271 1.271 25 H -0.251 1.251 26 C -0.067 4.067 27 C -0.211 4.211 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.197 0.803 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.282 0.718 41 H 0.107 0.893 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.828 21.329 8.915 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 N -0.154 5.154 4 N -0.161 5.161 5 C -0.046 4.046 6 C -0.063 4.063 7 C -0.269 4.269 8 C 0.107 3.893 9 H 0.098 0.902 10 C -0.224 4.224 11 O -0.222 6.222 12 C 0.089 3.911 13 C -0.178 4.178 14 C -0.073 4.073 15 C -0.182 4.182 16 C 0.265 3.735 17 O -0.497 6.497 18 C -0.575 4.575 19 H 0.115 0.885 20 C -0.197 4.197 21 N -0.418 5.418 22 Si 0.814 3.186 23 H -0.174 1.174 24 H -0.196 1.196 25 H -0.174 1.174 26 C -0.086 4.086 27 C -0.229 4.229 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.213 0.787 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.523 22.594 8.984 26.113 hybrid contribution -0.091 -1.536 -0.416 1.594 sum 9.432 21.058 8.568 24.613 Atomic orbital electron populations 1.20354 0.85071 1.04058 1.04231 1.22530 0.98034 0.89403 0.98689 1.77249 0.87636 1.23309 1.27221 1.48725 1.05819 1.05264 1.56306 1.22208 0.82849 0.94986 1.04588 1.22663 0.99905 0.84838 0.98915 1.19705 0.93238 0.94007 1.19995 1.20455 0.89754 0.84486 0.94600 0.90238 1.22303 1.03220 1.01970 0.94948 1.85950 1.36902 1.28194 1.71194 1.19147 0.92563 0.86186 0.93155 1.20577 1.00490 0.94747 1.02035 1.21380 0.94627 0.95046 0.96211 1.21440 0.95403 0.98980 1.02414 1.18810 0.88601 0.85092 0.81001 1.90437 1.22126 1.75152 1.61944 1.21444 0.98494 1.04859 1.32655 0.88527 1.27309 0.97530 0.99450 0.95418 1.70108 1.18975 1.20176 1.32563 0.85100 0.77877 0.76755 0.78901 1.17371 1.19563 1.17427 1.21114 0.99093 0.93521 0.94829 1.21291 0.95928 0.98657 1.07018 0.88810 0.90388 0.89681 0.89774 0.88839 0.86758 0.78661 0.89452 0.92152 0.91630 0.82763 0.84153 0.90811 0.87448 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.26 71.23 0.73 -0.51 16 2 C 0.08 1.73 7.22 43.10 0.31 2.04 16 3 N -0.33 -7.82 12.58 -47.38 -0.60 -8.42 16 4 N -0.38 -7.18 4.01 -369.56 -1.48 -8.67 16 5 C 0.09 0.87 11.47 127.77 1.47 2.33 16 6 C 0.08 1.63 10.91 83.54 0.91 2.54 16 7 C -0.26 -5.62 5.24 -20.14 -0.11 -5.73 16 8 C 0.16 3.64 2.47 29.85 0.07 3.71 16 9 H 0.08 1.77 5.57 -2.39 -0.01 1.75 16 10 C -0.17 -3.22 9.15 71.98 0.66 -2.56 16 11 O -0.31 -8.17 9.34 -89.78 -0.84 -9.01 16 12 C 0.14 4.27 6.62 22.71 0.15 4.42 16 13 C -0.16 -5.22 9.97 22.34 0.22 -4.99 16 14 C -0.05 -2.16 9.43 22.53 0.21 -1.95 16 15 C -0.18 -8.80 5.89 -19.98 -0.12 -8.92 16 16 C 0.36 21.79 6.91 25.60 0.18 21.96 16 17 O -0.60 -41.02 14.89 -4.76 -0.07 -41.09 16 18 C -0.54 -30.59 8.86 23.65 0.21 -30.38 16 19 H 0.10 4.76 6.01 -2.91 -0.02 4.74 16 20 C 0.02 1.18 5.50 85.40 0.47 1.65 16 21 N -0.79 -47.33 11.73 21.89 0.26 -47.07 16 22 Si 1.00 39.27 29.56 68.60 2.03 41.30 16 23 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 24 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 26 C -0.07 -2.92 9.59 22.53 0.22 -2.70 16 27 C -0.21 -7.11 8.21 22.34 0.18 -6.93 16 28 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.22 7.37 -2.39 -0.02 1.20 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.20 2.89 8.04 -2.91 -0.02 2.86 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.27 6.89 -2.39 -0.02 1.25 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.14 5.27 6.19 -2.91 -0.02 5.25 16 40 H 0.28 15.09 8.29 -92.71 -0.77 14.32 16 41 H 0.11 4.97 7.65 -2.91 -0.02 4.95 16 42 H 0.15 4.09 5.40 -2.91 -0.02 4.07 16 Total: -1.00 -80.70 357.58 6.11 -74.59 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 1.05 Total: 24.39 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 5.77 Total: -26.01 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.82 Total: -64.15 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.91 Total: -50.11 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -80.70 6.11 -74.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233519058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.141 kcal (2) G-P(sol) polarization free energy of solvation -80.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds