Wall clock time and date at job start Tue Mar 31 2020 11:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38152 * 120.81547 * 2 1 4 4 C 1.38999 * 119.24747 * 179.97438 * 3 2 1 5 5 O 1.35632 * 119.54857 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00333 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47465 * 150.00025 * 6 5 4 8 8 C 1.52993 * 109.47320 * 270.00752 * 6 5 4 9 9 N 1.32336 * 120.90281 * 359.97438 * 4 3 2 10 10 C 1.31757 * 121.78015 * 359.76298 * 9 4 3 11 11 C 1.39285 * 120.65648 * 0.50096 * 10 9 4 12 12 C 1.48247 * 120.48174 * 179.76990 * 11 10 9 13 13 C 1.39452 * 119.65587 * 312.40099 * 12 11 10 14 14 C 1.38203 * 119.14837 * 179.76759 * 13 12 11 15 15 C 1.39431 * 118.45880 * 0.44673 * 14 13 12 16 16 O 1.35723 * 120.38763 * 179.80615 * 15 14 13 17 17 C 1.34811 * 116.99633 * 5.09223 * 16 15 14 18 18 H 1.08005 * 120.00352 * 354.94637 * 17 16 15 19 19 C 1.38649 * 120.00209 * 174.94896 * 17 16 15 20 20 N 1.31552 * 120.00333 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99411 * 359.72419 * 19 17 16 22 22 H 1.48498 * 109.47139 * 270.27599 * 21 19 17 23 23 H 1.48491 * 109.47203 * 30.27855 * 21 19 17 24 24 H 1.48499 * 109.46453 * 150.27717 * 21 19 17 25 25 C 1.38934 * 119.23481 * 359.53175 * 15 14 13 26 26 N 1.31689 * 120.79128 * 0.24823 * 25 15 14 27 27 H 1.09000 * 109.46587 * 264.64828 * 1 2 3 28 28 H 1.08996 * 109.47242 * 24.64483 * 1 2 3 29 29 H 1.09004 * 109.47020 * 144.64931 * 1 2 3 30 30 H 1.08003 * 120.37636 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.46651 * 30.00512 * 6 5 4 32 32 H 1.09005 * 109.46788 * 60.00571 * 7 6 5 33 33 H 1.09000 * 109.47521 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47368 * 300.01009 * 7 6 5 35 35 H 1.09003 * 109.47704 * 59.99715 * 8 6 5 36 36 H 1.09009 * 109.47504 * 179.97438 * 8 6 5 37 37 H 1.09005 * 109.47062 * 299.99508 * 8 6 5 38 38 H 1.08005 * 119.66765 * 180.24674 * 10 9 4 39 39 H 1.08007 * 120.42605 * 359.97438 * 13 12 11 40 40 H 1.07998 * 120.77104 * 180.23307 * 14 13 12 41 41 H 0.96997 * 120.00368 * 179.72199 * 20 19 17 42 42 H 1.08000 * 119.60915 * 180.27220 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2148 1.1865 0.0000 4 6 3.6042 1.1484 0.0005 5 8 4.3052 2.3096 0.0000 6 6 5.7304 2.2071 0.0000 7 6 6.3288 3.4162 -0.7217 8 6 6.2391 2.1710 1.4425 9 7 4.2526 -0.0052 0.0016 10 6 3.6161 -1.1589 0.0067 11 6 2.2239 -1.2020 0.0009 12 6 1.5118 -2.5022 0.0016 13 6 1.9009 -3.5025 -0.8887 14 6 1.2330 -4.7123 -0.8757 15 6 0.1836 -4.8823 0.0266 16 8 -0.5017 -6.0530 0.0700 17 6 -0.0525 -7.0544 -0.7129 18 1 0.7650 -6.8801 -1.3969 19 6 -0.6401 -8.3081 -0.6401 20 7 -0.2015 -9.2855 -1.4037 21 14 -2.0490 -8.6116 0.5484 22 1 -1.5057 -9.0575 1.8566 23 1 -2.8190 -7.3557 0.7343 24 1 -2.9421 -9.6631 -0.0010 25 6 -0.1487 -3.8414 0.8847 26 7 0.5111 -2.7022 0.8499 27 1 -0.3632 -0.0959 1.0232 28 1 -0.3633 0.9340 -0.4285 29 1 -0.3633 -0.8382 -0.5946 30 1 1.6943 2.1328 0.0004 31 1 6.0289 1.2931 -0.5135 32 1 6.0303 4.3302 -0.2082 33 1 7.4160 3.3378 -0.7221 34 1 5.9663 3.4419 -1.7494 35 1 5.8129 1.3096 1.9567 36 1 7.3264 2.0923 1.4425 37 1 5.9407 3.0850 1.9560 38 1 4.1796 -2.0803 0.0114 39 1 2.7161 -3.3351 -1.5773 40 1 1.5150 -5.5064 -1.5512 41 1 -0.6099 -10.1636 -1.3498 42 1 -0.9576 -3.9681 1.5890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236581524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:07 Heat of formation + Delta-G solvation = -4.367609 kcal Electronic energy + Delta-G solvation = -24780.521342 eV Core-core repulsion = 21112.609274 eV Total energy + Delta-G solvation = -3667.912068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76962 -39.75473 -38.44090 -37.28411 -33.87949 -33.44240 -32.64436 -31.70571 -31.10384 -28.53440 -27.73891 -27.45072 -25.54694 -23.63560 -23.13843 -22.73949 -21.37626 -20.57940 -18.23408 -18.02540 -17.54345 -16.88783 -16.38537 -15.78949 -15.51094 -14.81328 -14.61074 -14.51416 -14.23836 -14.09894 -13.92370 -13.53714 -13.15648 -12.90112 -12.87226 -12.69495 -12.64570 -12.54503 -12.43271 -12.41013 -12.08138 -11.99305 -11.88224 -11.33415 -11.08488 -11.02129 -10.87499 -10.42826 -9.84690 -9.59098 -9.47174 -9.19332 -9.05323 -8.96485 -8.49877 -7.47001 -6.62683 -4.28390 1.05061 1.27736 1.85404 2.07356 2.95479 3.10899 3.15137 3.28104 3.78421 4.07117 4.28964 4.35113 4.50050 4.65911 4.76715 4.77316 4.88228 4.90564 4.99447 5.03944 5.18366 5.29539 5.30172 5.48421 5.51980 5.54848 5.60530 5.66152 5.73035 5.77381 5.80903 5.85525 5.91067 5.97666 6.01688 6.14775 6.34041 6.48695 6.53030 6.75678 6.86253 7.14401 7.28744 7.52759 7.77268 7.90181 8.54437 8.70517 9.27666 10.43650 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.002480 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.472605 B =11289.496851 C =11758.667113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.015 3.985 3 C -0.196 4.196 4 C 0.315 3.685 5 O -0.305 6.305 6 C 0.081 3.919 7 C -0.150 4.150 8 C -0.168 4.168 9 N -0.543 5.543 10 C 0.150 3.850 11 C -0.096 4.096 12 C 0.059 3.941 13 C -0.100 4.100 14 C -0.187 4.187 15 C 0.114 3.886 16 O -0.199 6.199 17 C -0.393 4.393 18 H 0.108 0.892 19 C 0.067 3.933 20 N -0.868 5.868 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.257 1.257 24 H -0.280 1.280 25 C 0.032 3.968 26 N -0.429 5.429 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.159 0.841 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.283 0.717 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 19.654 2.075 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.216 4.216 4 C 0.137 3.863 5 O -0.213 6.213 6 C 0.025 3.975 7 C -0.207 4.207 8 C -0.225 4.225 9 N -0.266 5.266 10 C -0.006 4.006 11 C -0.100 4.100 12 C -0.077 4.077 13 C -0.121 4.121 14 C -0.213 4.213 15 C 0.058 3.942 16 O -0.102 6.102 17 C -0.468 4.468 18 H 0.126 0.874 19 C -0.139 4.139 20 N -0.503 5.503 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.181 1.181 24 H -0.205 1.205 25 C -0.131 4.131 26 N -0.138 5.138 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.177 0.823 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.094 0.906 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.166 20.272 2.672 22.017 hybrid contribution -0.842 -1.292 -0.282 1.568 sum 7.324 18.979 2.390 20.483 Atomic orbital electron populations 1.20750 0.89450 1.02270 1.03725 1.20181 0.96975 0.90807 0.91367 1.20808 0.91092 0.99376 1.10353 1.19752 0.88881 0.84975 0.92676 1.86254 1.20741 1.26596 1.87697 1.22291 0.77675 1.00403 0.97151 1.21902 1.00626 0.97449 1.00741 1.22209 1.01409 1.02704 0.96218 1.67184 1.40943 0.98108 1.20361 1.22463 0.90695 0.94469 0.93014 1.19166 0.93367 0.92020 1.05414 1.18802 0.97600 0.93107 0.98222 1.21716 0.99358 0.92756 0.98220 1.21587 0.98672 0.98655 1.02393 1.20298 0.91399 0.88078 0.94438 1.83560 1.48730 1.18219 1.59645 1.20804 1.19493 0.87723 1.18810 0.87447 1.24518 0.98423 0.93709 0.97209 1.69632 1.40935 1.02425 1.37348 0.86152 0.81205 0.79001 0.80468 1.19600 1.18098 1.20529 1.21764 1.02391 0.88223 1.00741 1.67501 1.05299 1.21255 1.19729 0.89605 0.91961 0.90687 0.84442 0.89250 0.91775 0.90634 0.91895 0.91890 0.91273 0.92172 0.82341 0.85980 0.83838 0.90643 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.82 36.01 0.32 -1.01 16 2 C 0.01 0.20 5.93 -104.01 -0.62 -0.41 16 3 C -0.20 -2.55 9.71 -39.33 -0.38 -2.93 16 4 C 0.32 4.33 7.46 -17.05 -0.13 4.21 16 5 O -0.30 -3.83 9.76 -18.60 -0.18 -4.01 16 6 C 0.08 0.82 3.10 -26.74 -0.08 0.74 16 7 C -0.15 -1.13 9.56 37.16 0.36 -0.78 16 8 C -0.17 -1.54 9.53 37.15 0.35 -1.18 16 9 N -0.54 -7.63 8.62 -13.03 -0.11 -7.75 16 10 C 0.15 2.11 10.61 -17.19 -0.18 1.93 16 11 C -0.10 -1.46 5.62 -104.75 -0.59 -2.05 16 12 C 0.06 1.00 5.56 -82.92 -0.46 0.54 16 13 C -0.10 -1.71 9.48 -39.14 -0.37 -2.08 16 14 C -0.19 -3.70 9.25 -39.15 -0.36 -4.07 16 15 C 0.11 2.43 6.67 -38.88 -0.26 2.17 16 16 O -0.20 -4.86 8.59 0.19 0.00 -4.85 16 17 C -0.39 -10.32 9.95 30.88 0.31 -10.01 16 18 H 0.11 2.87 5.48 -52.48 -0.29 2.58 16 19 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 20 N -0.87 -23.68 13.96 55.48 0.77 -22.91 16 21 Si 0.91 20.33 28.62 -169.99 -4.86 15.47 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.03 0.60 11.14 -17.35 -0.19 0.41 16 26 N -0.43 -7.75 8.82 -9.61 -0.08 -7.83 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.07 1.06 7.10 -51.93 -0.37 0.69 16 30 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.09 0.99 6.97 -51.93 -0.36 0.62 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.16 1.97 7.98 -52.48 -0.42 1.55 16 39 H 0.12 1.75 7.99 -52.48 -0.42 1.33 16 40 H 0.14 2.93 5.75 -52.49 -0.30 2.63 16 41 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -28.10 358.35 -6.97 -35.08 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.52 Total: 4.27 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.39 Total: -12.86 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.58 Total: -38.49 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.18 Total: -8.87 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.86 Total: 15.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.10 -6.97 -35.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236581524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.710 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds