Wall clock time and date at job start Tue Mar 31 2020 11:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38152 * 120.81547 * 2 1 4 4 C 1.38999 * 119.24747 * 179.97438 * 3 2 1 5 5 O 1.35632 * 119.54857 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00333 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47465 * 150.00025 * 6 5 4 8 8 C 1.52993 * 109.47320 * 270.00752 * 6 5 4 9 9 N 1.32336 * 120.90281 * 359.97438 * 4 3 2 10 10 C 1.31757 * 121.78015 * 359.76298 * 9 4 3 11 11 C 1.39285 * 120.65648 * 0.50096 * 10 9 4 12 12 C 1.48247 * 120.48174 * 179.76990 * 11 10 9 13 13 C 1.39452 * 119.65587 * 312.40099 * 12 11 10 14 14 C 1.38203 * 119.14837 * 179.76759 * 13 12 11 15 15 C 1.39431 * 118.45880 * 0.44673 * 14 13 12 16 16 O 1.35723 * 120.38763 * 179.80615 * 15 14 13 17 17 C 1.34811 * 116.99633 * 5.09223 * 16 15 14 18 18 H 1.08005 * 120.00352 * 354.94637 * 17 16 15 19 19 C 1.38649 * 120.00209 * 174.94896 * 17 16 15 20 20 N 1.31552 * 120.00333 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99411 * 359.72419 * 19 17 16 22 22 H 1.48498 * 109.47139 * 270.27599 * 21 19 17 23 23 H 1.48491 * 109.47203 * 30.27855 * 21 19 17 24 24 H 1.48499 * 109.46453 * 150.27717 * 21 19 17 25 25 C 1.38934 * 119.23481 * 359.53175 * 15 14 13 26 26 N 1.31689 * 120.79128 * 0.24823 * 25 15 14 27 27 H 1.09000 * 109.46587 * 264.64828 * 1 2 3 28 28 H 1.08996 * 109.47242 * 24.64483 * 1 2 3 29 29 H 1.09004 * 109.47020 * 144.64931 * 1 2 3 30 30 H 1.08003 * 120.37636 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.46651 * 30.00512 * 6 5 4 32 32 H 1.09005 * 109.46788 * 60.00571 * 7 6 5 33 33 H 1.09000 * 109.47521 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47368 * 300.01009 * 7 6 5 35 35 H 1.09003 * 109.47704 * 59.99715 * 8 6 5 36 36 H 1.09009 * 109.47504 * 179.97438 * 8 6 5 37 37 H 1.09005 * 109.47062 * 299.99508 * 8 6 5 38 38 H 1.08005 * 119.66765 * 180.24674 * 10 9 4 39 39 H 1.08007 * 120.42605 * 359.97438 * 13 12 11 40 40 H 1.07998 * 120.77104 * 180.23307 * 14 13 12 41 41 H 0.96997 * 120.00368 * 179.72199 * 20 19 17 42 42 H 1.08000 * 119.60915 * 180.27220 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2148 1.1865 0.0000 4 6 3.6042 1.1484 0.0005 5 8 4.3052 2.3096 0.0000 6 6 5.7304 2.2071 0.0000 7 6 6.3288 3.4162 -0.7217 8 6 6.2391 2.1710 1.4425 9 7 4.2526 -0.0052 0.0016 10 6 3.6161 -1.1589 0.0067 11 6 2.2239 -1.2020 0.0009 12 6 1.5118 -2.5022 0.0016 13 6 1.9009 -3.5025 -0.8887 14 6 1.2330 -4.7123 -0.8757 15 6 0.1836 -4.8823 0.0266 16 8 -0.5017 -6.0530 0.0700 17 6 -0.0525 -7.0544 -0.7129 18 1 0.7650 -6.8801 -1.3969 19 6 -0.6401 -8.3081 -0.6401 20 7 -0.2015 -9.2855 -1.4037 21 14 -2.0490 -8.6116 0.5484 22 1 -1.5057 -9.0575 1.8566 23 1 -2.8190 -7.3557 0.7343 24 1 -2.9421 -9.6631 -0.0010 25 6 -0.1487 -3.8414 0.8847 26 7 0.5111 -2.7022 0.8499 27 1 -0.3632 -0.0959 1.0232 28 1 -0.3633 0.9340 -0.4285 29 1 -0.3633 -0.8382 -0.5946 30 1 1.6943 2.1328 0.0004 31 1 6.0289 1.2931 -0.5135 32 1 6.0303 4.3302 -0.2082 33 1 7.4160 3.3378 -0.7221 34 1 5.9663 3.4419 -1.7494 35 1 5.8129 1.3096 1.9567 36 1 7.3264 2.0923 1.4425 37 1 5.9407 3.0850 1.9560 38 1 4.1796 -2.0803 0.0114 39 1 2.7161 -3.3351 -1.5773 40 1 1.5150 -5.5064 -1.5512 41 1 -0.6099 -10.1636 -1.3498 42 1 -0.9576 -3.9681 1.5890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236581524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:05 Heat of formation + Delta-G solvation = -20.487728 kcal Electronic energy + Delta-G solvation = -24781.220363 eV Core-core repulsion = 21112.609274 eV Total energy + Delta-G solvation = -3668.611089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.91929 -41.22145 -39.63333 -38.75060 -34.99373 -34.53175 -34.28266 -33.15562 -32.45858 -29.84526 -28.85262 -28.15025 -27.27813 -24.91954 -24.54415 -23.85583 -22.74725 -21.56700 -19.98846 -19.23913 -19.02540 -18.02567 -17.74870 -17.14751 -16.66429 -16.26646 -16.01263 -15.71423 -15.44645 -15.37913 -15.07784 -14.69447 -14.59190 -14.46397 -14.20139 -13.96909 -13.86743 -13.63720 -13.57189 -13.27989 -13.15435 -13.07656 -12.82481 -12.74487 -12.57857 -12.11920 -11.86972 -11.71118 -11.70899 -11.03798 -10.69738 -10.62747 -10.56978 -10.40084 -9.77919 -8.94182 -8.54922 -6.27537 -0.18492 0.19573 0.33664 0.62242 1.34166 1.37345 1.53285 2.02821 2.25985 2.60916 2.79192 2.84384 3.08349 3.24894 3.40855 3.79886 3.81551 3.93435 3.98012 4.04702 4.06301 4.15595 4.26497 4.31174 4.39894 4.52936 4.70019 4.75092 4.76571 4.80648 4.83849 4.86915 4.87751 4.94001 5.13287 5.14429 5.23316 5.27872 5.28474 5.37981 5.50693 5.53954 5.68939 5.95699 6.28542 6.77810 6.81468 7.01215 7.45282 8.55464 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.032012 B = 0.002480 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.472605 B =11289.496851 C =11758.667113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.015 3.985 3 C -0.195 4.195 4 C 0.314 3.686 5 O -0.310 6.310 6 C 0.073 3.927 7 C -0.145 4.145 8 C -0.164 4.164 9 N -0.550 5.550 10 C 0.155 3.845 11 C -0.123 4.123 12 C 0.086 3.914 13 C -0.099 4.099 14 C -0.189 4.189 15 C 0.086 3.914 16 O -0.225 6.225 17 C -0.403 4.403 18 H 0.087 0.913 19 C 0.016 3.984 20 N -0.914 5.914 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.258 1.258 24 H -0.269 1.269 25 C 0.040 3.960 26 N -0.432 5.432 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.161 0.839 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.173 0.827 39 H 0.153 0.847 40 H 0.131 0.869 41 H 0.287 0.713 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.454 22.840 2.896 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.007 3.993 3 C -0.216 4.216 4 C 0.135 3.865 5 O -0.218 6.218 6 C 0.017 3.983 7 C -0.202 4.202 8 C -0.221 4.221 9 N -0.273 5.273 10 C -0.002 4.002 11 C -0.127 4.127 12 C -0.051 4.051 13 C -0.118 4.118 14 C -0.215 4.215 15 C 0.033 3.967 16 O -0.130 6.130 17 C -0.479 4.479 18 H 0.104 0.896 19 C -0.185 4.185 20 N -0.554 5.554 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.181 1.181 24 H -0.194 1.194 25 C -0.121 4.121 26 N -0.141 5.141 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.179 0.821 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.190 0.810 39 H 0.171 0.829 40 H 0.149 0.851 41 H 0.097 0.903 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.842 23.513 3.506 25.364 hybrid contribution -0.770 -1.790 -0.533 2.020 sum 8.072 21.722 2.973 23.364 Atomic orbital electron populations 1.20754 0.88550 1.03006 1.03601 1.20358 0.97670 0.90673 0.90580 1.21026 0.90937 0.99988 1.09600 1.20040 0.89482 0.85227 0.91706 1.86264 1.22115 1.26072 1.87303 1.22562 0.76478 1.01259 0.98008 1.21907 1.01735 0.96327 1.00213 1.22185 1.02595 1.02010 0.95320 1.67251 1.41023 0.98247 1.20811 1.22658 0.90369 0.95138 0.92012 1.19148 0.93891 0.91403 1.08233 1.19246 0.96006 0.93650 0.96173 1.21986 0.99731 0.91509 0.98611 1.21677 0.98584 0.99452 1.01813 1.20721 0.92334 0.87935 0.95718 1.83523 1.50054 1.18770 1.60623 1.20722 1.19341 0.88771 1.19060 0.89576 1.25275 1.00858 0.93458 0.98869 1.69710 1.42994 1.03036 1.39619 0.85249 0.78414 0.78854 0.78507 1.19075 1.18146 1.19400 1.22077 1.02421 0.87554 1.00054 1.67648 1.05779 1.20620 1.20057 0.89573 0.89228 0.92490 0.82128 0.90290 0.91244 0.88552 0.92098 0.93905 0.89261 0.91618 0.81001 0.82947 0.85113 0.90340 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.32 8.82 71.24 0.63 -1.69 16 2 C 0.02 0.38 5.93 -19.47 -0.12 0.26 16 3 C -0.20 -4.51 9.71 22.43 0.22 -4.29 16 4 C 0.31 7.86 7.46 84.80 0.63 8.50 16 5 O -0.31 -7.04 9.76 -89.46 -0.87 -7.91 16 6 C 0.07 1.31 3.10 30.59 0.09 1.41 16 7 C -0.14 -1.78 9.56 71.98 0.69 -1.09 16 8 C -0.16 -2.63 9.53 71.98 0.69 -1.94 16 9 N -0.55 -14.31 8.62 -307.99 -2.65 -16.96 16 10 C 0.15 4.02 10.61 84.96 0.90 4.92 16 11 C -0.12 -3.47 5.62 -19.95 -0.11 -3.58 16 12 C 0.09 2.79 5.56 41.97 0.23 3.02 16 13 C -0.10 -3.24 9.48 22.55 0.21 -3.03 16 14 C -0.19 -7.58 9.25 22.55 0.21 -7.38 16 15 C 0.09 3.70 6.67 22.72 0.15 3.86 16 16 O -0.22 -11.25 8.59 -22.24 -0.19 -11.44 16 17 C -0.40 -22.12 9.95 67.92 0.68 -21.44 16 18 H 0.09 4.91 5.48 -2.91 -0.02 4.89 16 19 C 0.02 0.85 5.49 84.83 0.47 1.31 16 20 N -0.91 -51.98 13.96 21.61 0.30 -51.68 16 21 Si 0.97 42.77 28.62 68.60 1.96 44.74 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.04 1.49 11.14 84.88 0.95 2.44 16 26 N -0.43 -14.94 8.82 -184.33 -1.63 -16.57 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.52 8.07 -2.39 -0.02 1.50 16 29 H 0.06 1.50 7.10 -2.38 -0.02 1.48 16 30 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.08 1.60 6.97 -2.38 -0.02 1.58 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.17 3.87 7.98 -2.91 -0.02 3.85 16 39 H 0.15 4.05 7.99 -2.91 -0.02 4.03 16 40 H 0.13 5.60 5.75 -2.91 -0.02 5.58 16 41 H 0.29 14.97 8.31 -92.71 -0.77 14.20 16 42 H 0.17 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -62.05 358.35 4.47 -57.57 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.04 Total: 20.98 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 6.52 Total: -18.73 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.98 Total: -85.21 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.06 Total: -19.36 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.96 Total: 44.74 kcal Total: -62.05 4.47 -57.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236581524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.087 kcal (2) G-P(sol) polarization free energy of solvation -62.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds