Wall clock time and date at job start Tue Mar 31 2020 11:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35773 * 116.99928 * 2 1 4 4 N 1.32371 * 119.57691 * 0.02562 * 3 2 1 5 5 C 1.32224 * 121.65065 * 179.97438 * 4 3 2 6 6 O 1.35760 * 119.68746 * 179.71894 * 5 4 3 7 7 C 1.42896 * 117.00344 * 0.02562 * 6 5 4 8 8 C 1.39384 * 120.62089 * 359.97438 * 5 4 3 9 9 N 1.40240 * 120.44535 * 179.97438 * 8 5 4 10 10 C 1.39663 * 119.99956 * 73.83471 * 9 8 5 11 11 C 1.39371 * 119.95532 * 7.66442 * 10 9 8 12 12 C 1.38471 * 120.42050 * 179.71879 * 11 10 9 13 13 C 1.37698 * 120.32620 * 0.55438 * 12 11 10 14 14 C 1.40757 * 119.89792 * 359.72154 * 13 12 11 15 15 C 1.41410 * 120.20276 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99715 * 25.22790 * 15 14 13 17 17 C 1.39923 * 120.00163 * 205.22229 * 15 14 13 18 18 N 1.30827 * 120.00114 * 16.23079 * 17 15 14 19 19 Si 1.86806 * 120.00138 * 196.23670 * 17 15 14 20 20 H 1.48504 * 109.47191 * 59.99657 * 19 17 15 21 21 H 1.48497 * 109.47220 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46886 * 300.00080 * 19 17 15 23 23 C 1.38313 * 119.95663 * 187.93201 * 10 9 8 24 24 C 1.39021 * 119.10776 * 0.02562 * 8 5 4 25 25 C 1.38636 * 118.47719 * 359.97438 * 24 8 5 26 26 C 1.50692 * 120.34967 * 180.02562 * 25 24 8 27 27 H 1.09000 * 109.47555 * 59.99458 * 1 2 3 28 28 H 1.08996 * 109.47462 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47305 * 299.99280 * 1 2 3 30 30 H 1.09000 * 109.47115 * 299.99865 * 7 6 5 31 31 H 1.08999 * 109.47107 * 59.99569 * 7 6 5 32 32 H 1.08997 * 109.47440 * 179.97438 * 7 6 5 33 33 H 0.97002 * 119.99908 * 253.82981 * 9 8 5 34 34 H 1.08004 * 119.78611 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.83429 * 180.27100 * 12 11 10 36 36 H 1.07999 * 120.04817 * 179.74459 * 13 12 11 37 37 H 0.96999 * 120.00342 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.15992 * 359.97438 * 23 10 9 39 39 H 1.07994 * 120.76049 * 180.02562 * 24 8 5 40 40 H 1.09000 * 109.47354 * 269.97954 * 26 25 24 41 41 H 1.08998 * 109.47661 * 29.97929 * 26 25 24 42 42 H 1.09005 * 109.47084 * 149.97622 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3162 2.3146 0.0005 5 6 1.8734 3.5136 0.0010 6 8 1.0873 4.6204 -0.0042 7 6 -0.3264 4.4121 -0.0096 8 6 3.2604 3.6520 0.0016 9 7 3.8475 4.9255 0.0016 10 6 3.8336 5.7009 1.1632 11 6 3.3816 5.1511 2.3615 12 6 3.3691 5.9093 3.5201 13 6 3.7927 7.2194 3.4983 14 6 4.2465 7.7901 2.2943 15 6 4.6835 9.1346 2.2647 16 1 5.0583 9.6005 3.1642 17 6 4.6306 9.8614 1.0702 18 7 3.9011 9.4298 0.0737 19 14 5.6018 11.4479 0.8982 20 1 7.0480 11.1654 1.0826 21 1 5.3783 12.0211 -0.4533 22 1 5.1517 12.4179 1.9286 23 6 4.2631 7.0150 1.1216 24 6 4.0539 2.5104 0.0011 25 6 3.4305 1.2721 0.0005 26 6 4.2497 0.0073 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.6073 3.8491 -0.8997 31 1 -0.6146 3.8524 0.8802 32 1 -0.8357 5.3757 -0.0130 33 1 4.2634 5.2679 -0.8051 34 1 3.0429 4.1259 2.3874 35 1 3.0211 5.4724 4.4443 36 1 3.7772 7.8079 4.4037 37 1 3.8641 9.9338 -0.7543 38 1 4.6098 7.4434 0.1928 39 1 5.1311 2.5866 0.0019 40 1 4.4473 -0.2976 -1.0271 41 1 5.1942 0.1860 0.5144 42 1 3.7002 -0.7815 0.5143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250187627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:50 Heat of formation + Delta-G solvation = -11.571504 kcal Electronic energy + Delta-G solvation = -25894.067838 eV Core-core repulsion = 22225.843386 eV Total energy + Delta-G solvation = -3668.224452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89668 -38.85252 -37.77478 -36.97498 -34.83910 -33.28976 -33.13119 -30.19162 -29.40612 -27.81107 -27.71458 -27.01398 -25.51267 -25.12640 -22.74603 -21.91318 -20.96909 -19.91721 -18.74528 -17.86849 -17.34431 -16.48382 -16.07154 -15.88539 -15.44612 -15.27311 -14.87488 -14.67157 -14.40946 -13.78290 -13.58513 -13.36583 -13.08205 -12.82433 -12.57727 -12.48374 -12.32026 -12.19772 -11.87668 -11.69528 -11.50085 -11.40854 -11.24902 -11.01313 -10.61560 -10.47566 -10.37548 -10.06289 -9.65991 -9.52255 -9.44566 -9.24793 -8.83878 -7.73268 -7.26889 -6.68267 -6.23406 -4.28186 1.33436 1.36348 2.91108 3.03225 3.11144 3.14565 3.21917 3.33518 3.38250 3.81069 4.00438 4.13204 4.41473 4.75304 5.00700 5.07856 5.19710 5.20600 5.33415 5.38815 5.43893 5.48034 5.52585 5.67057 5.75019 5.83394 5.92375 6.15390 6.22733 6.30703 6.45467 6.61797 6.90808 6.97579 7.12399 7.16903 7.38237 7.42692 7.53651 7.79468 7.91989 7.98742 8.11545 8.19691 8.50989 8.67538 8.84762 9.03452 9.12313 10.30266 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021421 B = 0.003421 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.819630 B = 8182.812228 C = 8419.714487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.341 3.659 4 N -0.588 5.588 5 C 0.351 3.649 6 O -0.277 6.277 7 C 0.041 3.959 8 C 0.081 3.919 9 N -0.697 5.697 10 C 0.215 3.785 11 C -0.280 4.280 12 C -0.069 4.069 13 C -0.252 4.252 14 C 0.137 3.863 15 C -0.465 4.465 16 H 0.075 0.925 17 C 0.077 3.923 18 N -0.793 5.793 19 Si 0.905 3.095 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.218 4.218 24 C -0.028 4.028 25 C -0.188 4.188 26 C -0.090 4.090 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.400 0.600 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.278 0.722 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -14.875 -4.213 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.163 3.837 4 N -0.327 5.327 5 C 0.170 3.830 6 O -0.182 6.182 7 C -0.055 4.055 8 C -0.016 4.016 9 N -0.327 5.327 10 C 0.119 3.881 11 C -0.302 4.302 12 C -0.088 4.088 13 C -0.272 4.272 14 C 0.134 3.866 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.419 5.419 19 Si 0.730 3.270 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.242 4.242 24 C -0.055 4.055 25 C -0.192 4.192 26 C -0.148 4.148 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.166 0.834 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.078 -14.930 -4.370 16.364 hybrid contribution 0.611 0.959 -0.407 1.208 sum -4.466 -13.971 -4.777 15.426 Atomic orbital electron populations 1.22794 0.77747 1.02550 1.02313 1.86234 1.22423 1.24451 1.88161 1.19059 0.88474 0.83295 0.92831 1.66756 1.41206 0.98292 1.26410 1.20106 0.88878 0.83631 0.90427 1.86527 1.18554 1.26536 1.86594 1.22817 0.78519 1.02667 1.01472 1.17263 0.87662 0.87713 1.09010 1.41594 1.65001 1.13606 1.12548 1.17594 0.95875 0.90253 0.84374 1.19810 1.18827 0.98850 0.92720 1.20259 0.98720 0.94311 0.95492 1.20877 1.12474 0.95594 0.98268 1.17295 0.86756 0.92276 0.90234 1.19504 1.38092 0.96367 0.95580 0.90654 1.25860 0.93514 0.99328 0.95274 1.69850 1.29727 1.37997 1.04316 0.86437 0.81096 0.81540 0.77975 1.18960 1.20503 1.19153 1.20741 1.12549 0.90361 1.00505 1.21486 1.00566 0.89479 0.93931 1.19572 0.90679 0.96617 1.12288 1.20447 0.98616 0.93753 1.01974 0.92574 0.88882 0.92485 0.92959 0.92733 0.88654 0.76422 0.90366 0.89743 0.89349 0.91160 0.86277 0.83449 0.91734 0.91642 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -3.93 9.52 -19.03 -0.18 -4.11 16 3 C 0.34 5.06 7.46 -17.16 -0.13 4.93 16 4 N -0.59 -9.51 8.06 -13.25 -0.11 -9.61 16 5 C 0.35 6.35 7.01 -16.96 -0.12 6.23 16 6 O -0.28 -5.28 10.10 -18.99 -0.19 -5.48 16 7 C 0.04 0.59 10.38 101.05 1.05 1.64 16 8 C 0.08 1.45 4.61 -83.29 -0.38 1.07 16 9 N -0.70 -13.80 5.21 -8.20 -0.04 -13.84 16 10 C 0.22 5.08 6.45 -83.84 -0.54 4.54 16 11 C -0.28 -6.62 9.19 -39.07 -0.36 -6.98 16 12 C -0.07 -1.64 10.02 -39.69 -0.40 -2.04 16 13 C -0.25 -6.43 9.79 -38.83 -0.38 -6.81 16 14 C 0.14 3.74 5.57 -106.85 -0.60 3.15 16 15 C -0.47 -12.57 9.06 -37.74 -0.34 -12.91 16 16 H 0.08 1.96 7.90 -52.48 -0.41 1.54 16 17 C 0.08 1.97 5.17 -17.35 -0.09 1.88 16 18 N -0.79 -20.71 10.91 55.55 0.61 -20.11 16 19 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.22 -5.70 8.53 -38.67 -0.33 -6.03 16 24 C -0.03 -0.42 9.78 -39.14 -0.38 -0.80 16 25 C -0.19 -2.60 5.91 -104.32 -0.62 -3.22 16 26 C -0.09 -0.95 9.80 36.00 0.35 -0.60 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.40 7.32 8.84 -40.82 -0.36 6.96 16 34 H 0.08 1.79 6.77 -52.48 -0.36 1.44 16 35 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 38 H 0.12 3.19 6.15 -52.48 -0.32 2.86 16 39 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.07 0.71 7.53 -51.93 -0.39 0.31 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -30.23 358.41 -7.38 -37.61 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.62 Total: 10.73 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.21 Total: -14.48 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.46 Total: -43.56 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.37 Total: -9.58 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.23 -7.38 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250187627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.034 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds