Wall clock time and date at job start Tue Mar 31 2020 11:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35773 * 116.99928 * 2 1 4 4 N 1.32371 * 119.57691 * 0.02562 * 3 2 1 5 5 C 1.32224 * 121.65065 * 179.97438 * 4 3 2 6 6 O 1.35760 * 119.68746 * 179.71894 * 5 4 3 7 7 C 1.42896 * 117.00344 * 0.02562 * 6 5 4 8 8 C 1.39384 * 120.62089 * 359.97438 * 5 4 3 9 9 N 1.40240 * 120.44535 * 179.97438 * 8 5 4 10 10 C 1.39663 * 119.99956 * 73.83471 * 9 8 5 11 11 C 1.39371 * 119.95532 * 7.66442 * 10 9 8 12 12 C 1.38471 * 120.42050 * 179.71879 * 11 10 9 13 13 C 1.37698 * 120.32620 * 0.55438 * 12 11 10 14 14 C 1.40757 * 119.89792 * 359.72154 * 13 12 11 15 15 C 1.41410 * 120.20276 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99715 * 25.22790 * 15 14 13 17 17 C 1.39923 * 120.00163 * 205.22229 * 15 14 13 18 18 N 1.30827 * 120.00114 * 16.23079 * 17 15 14 19 19 Si 1.86806 * 120.00138 * 196.23670 * 17 15 14 20 20 H 1.48504 * 109.47191 * 59.99657 * 19 17 15 21 21 H 1.48497 * 109.47220 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46886 * 300.00080 * 19 17 15 23 23 C 1.38313 * 119.95663 * 187.93201 * 10 9 8 24 24 C 1.39021 * 119.10776 * 0.02562 * 8 5 4 25 25 C 1.38636 * 118.47719 * 359.97438 * 24 8 5 26 26 C 1.50692 * 120.34967 * 180.02562 * 25 24 8 27 27 H 1.09000 * 109.47555 * 59.99458 * 1 2 3 28 28 H 1.08996 * 109.47462 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47305 * 299.99280 * 1 2 3 30 30 H 1.09000 * 109.47115 * 299.99865 * 7 6 5 31 31 H 1.08999 * 109.47107 * 59.99569 * 7 6 5 32 32 H 1.08997 * 109.47440 * 179.97438 * 7 6 5 33 33 H 0.97002 * 119.99908 * 253.82981 * 9 8 5 34 34 H 1.08004 * 119.78611 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.83429 * 180.27100 * 12 11 10 36 36 H 1.07999 * 120.04817 * 179.74459 * 13 12 11 37 37 H 0.96999 * 120.00342 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.15992 * 359.97438 * 23 10 9 39 39 H 1.07994 * 120.76049 * 180.02562 * 24 8 5 40 40 H 1.09000 * 109.47354 * 269.97954 * 26 25 24 41 41 H 1.08998 * 109.47661 * 29.97929 * 26 25 24 42 42 H 1.09005 * 109.47084 * 149.97622 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3162 2.3146 0.0005 5 6 1.8734 3.5136 0.0010 6 8 1.0873 4.6204 -0.0042 7 6 -0.3264 4.4121 -0.0096 8 6 3.2604 3.6520 0.0016 9 7 3.8475 4.9255 0.0016 10 6 3.8336 5.7009 1.1632 11 6 3.3816 5.1511 2.3615 12 6 3.3691 5.9093 3.5201 13 6 3.7927 7.2194 3.4983 14 6 4.2465 7.7901 2.2943 15 6 4.6835 9.1346 2.2647 16 1 5.0583 9.6005 3.1642 17 6 4.6306 9.8614 1.0702 18 7 3.9011 9.4298 0.0737 19 14 5.6018 11.4479 0.8982 20 1 7.0480 11.1654 1.0826 21 1 5.3783 12.0211 -0.4533 22 1 5.1517 12.4179 1.9286 23 6 4.2631 7.0150 1.1216 24 6 4.0539 2.5104 0.0011 25 6 3.4305 1.2721 0.0005 26 6 4.2497 0.0073 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.6073 3.8491 -0.8997 31 1 -0.6146 3.8524 0.8802 32 1 -0.8357 5.3757 -0.0130 33 1 4.2634 5.2679 -0.8051 34 1 3.0429 4.1259 2.3874 35 1 3.0211 5.4724 4.4443 36 1 3.7772 7.8079 4.4037 37 1 3.8641 9.9338 -0.7543 38 1 4.6098 7.4434 0.1928 39 1 5.1311 2.5866 0.0019 40 1 4.4473 -0.2976 -1.0271 41 1 5.1942 0.1860 0.5144 42 1 3.7002 -0.7815 0.5143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250187627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:47 Heat of formation + Delta-G solvation = -31.246431 kcal Electronic energy + Delta-G solvation = -25894.921007 eV Core-core repulsion = 22225.843386 eV Total energy + Delta-G solvation = -3669.077621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -42.11035 -40.07201 -39.46950 -38.25869 -36.45393 -35.12046 -34.27370 -31.64669 -31.35256 -28.98934 -28.88758 -28.27797 -27.10572 -26.61108 -23.96728 -23.23347 -22.85139 -21.65102 -19.90349 -19.23669 -18.98183 -17.99172 -17.44280 -17.26707 -16.83619 -16.54492 -16.35183 -16.27156 -15.94469 -14.88983 -14.81394 -14.67763 -14.50562 -14.42371 -14.07571 -13.77878 -13.63066 -13.51960 -13.16906 -12.95865 -12.83284 -12.73713 -12.56982 -12.51409 -12.42015 -12.12538 -11.64940 -11.53646 -11.50436 -11.29626 -10.99671 -10.74614 -10.48554 -9.24411 -8.98960 -8.58163 -8.00448 -6.30579 0.08860 0.16651 1.09802 1.31166 1.40833 1.51924 1.60187 1.97295 2.17462 2.25182 2.54291 2.70416 2.84462 3.24542 3.81817 3.91788 4.04921 4.17297 4.33727 4.34625 4.39332 4.41653 4.46544 4.49505 4.63915 4.72283 4.74464 4.90494 4.93821 4.95641 5.06769 5.20438 5.21710 5.28968 5.42212 5.48048 5.57629 5.86279 5.94750 6.08021 6.21114 6.21419 6.37155 6.57753 6.63925 6.90920 7.05648 7.06912 7.20076 8.41284 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021421 B = 0.003421 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.819630 B = 8182.812228 C = 8419.714487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.304 6.304 3 C 0.336 3.664 4 N -0.588 5.588 5 C 0.334 3.666 6 O -0.312 6.312 7 C 0.039 3.961 8 C 0.049 3.951 9 N -0.689 5.689 10 C 0.227 3.773 11 C -0.283 4.283 12 C -0.066 4.066 13 C -0.276 4.276 14 C 0.110 3.890 15 C -0.502 4.502 16 H 0.073 0.927 17 C 0.037 3.963 18 N -0.822 5.822 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.244 4.244 24 C -0.020 4.020 25 C -0.181 4.181 26 C -0.088 4.088 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.403 0.597 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.285 0.715 38 H 0.105 0.895 39 H 0.167 0.833 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -16.645 -4.628 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.211 6.211 3 C 0.158 3.842 4 N -0.328 5.328 5 C 0.154 3.846 6 O -0.218 6.218 7 C -0.056 4.056 8 C -0.048 4.048 9 N -0.319 5.319 10 C 0.129 3.871 11 C -0.306 4.306 12 C -0.085 4.085 13 C -0.297 4.297 14 C 0.107 3.893 15 C -0.532 4.532 16 H 0.091 0.909 17 C -0.177 4.177 18 N -0.448 5.448 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.267 4.267 24 C -0.047 4.047 25 C -0.185 4.185 26 C -0.145 4.145 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.240 0.760 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.185 0.815 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.893 -16.755 -4.801 18.103 hybrid contribution 0.421 1.257 -0.313 1.362 sum -4.472 -15.498 -5.114 16.922 Atomic orbital electron populations 1.23059 0.76086 1.04798 1.01940 1.86255 1.24032 1.23120 1.87665 1.19440 0.89208 0.83588 0.91992 1.66748 1.41392 0.98083 1.26536 1.20143 0.88929 0.84015 0.91556 1.86465 1.20487 1.27813 1.87019 1.22984 0.76764 1.03637 1.02189 1.17524 0.88051 0.87360 1.11848 1.41476 1.64653 1.14247 1.11507 1.17626 0.93992 0.89755 0.85750 1.19950 1.18720 0.99219 0.92681 1.20567 0.97499 0.93677 0.96762 1.21016 1.13887 0.96667 0.98092 1.17678 0.87341 0.92992 0.91296 1.19771 1.39828 0.97002 0.96586 0.90868 1.26701 0.93892 1.02787 0.94351 1.69917 1.30401 1.39567 1.04872 0.85295 0.79306 0.76907 0.78385 1.18514 1.19281 1.18604 1.20654 1.14706 0.91573 0.99804 1.21680 1.01354 0.88915 0.92715 1.19966 0.90739 0.97522 1.10258 1.20531 0.98688 0.91958 1.03327 0.92709 0.85376 0.93087 0.91649 0.92504 0.87570 0.76024 0.89463 0.86936 0.88934 0.90469 0.87714 0.81535 0.90082 0.90167 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.80 16 2 O -0.30 -7.02 9.52 -91.01 -0.87 -7.89 16 3 C 0.34 9.32 7.46 84.71 0.63 9.95 16 4 N -0.59 -18.42 8.06 -421.42 -3.40 -21.82 16 5 C 0.33 12.00 7.01 84.91 0.60 12.60 16 6 O -0.31 -12.03 10.10 -90.87 -0.92 -12.95 16 7 C 0.04 1.12 10.38 113.37 1.18 2.30 16 8 C 0.05 1.73 4.61 38.26 0.18 1.91 16 9 N -0.69 -27.63 5.21 -179.85 -0.94 -28.56 16 10 C 0.23 10.94 6.45 38.18 0.25 11.19 16 11 C -0.28 -13.41 9.19 22.60 0.21 -13.21 16 12 C -0.07 -3.16 10.02 22.20 0.22 -2.93 16 13 C -0.28 -14.45 9.79 22.76 0.22 -14.22 16 14 C 0.11 6.21 5.57 -21.31 -0.12 6.09 16 15 C -0.50 -28.04 9.06 23.46 0.21 -27.83 16 16 H 0.07 3.95 7.90 -2.91 -0.02 3.92 16 17 C 0.04 1.94 5.17 85.25 0.44 2.38 16 18 N -0.82 -43.99 10.91 21.82 0.24 -43.76 16 19 Si 0.98 39.13 29.59 68.60 2.03 41.16 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.24 -13.19 8.53 22.86 0.20 -13.00 16 24 C -0.02 -0.58 9.78 22.55 0.22 -0.36 16 25 C -0.18 -4.58 5.91 -19.67 -0.12 -4.69 16 26 C -0.09 -1.54 9.80 71.23 0.70 -0.85 16 27 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 28 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.40 15.13 8.84 -92.71 -0.82 14.32 16 34 H 0.09 3.95 6.77 -2.91 -0.02 3.93 16 35 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 36 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 38 H 0.10 5.87 6.15 -2.91 -0.02 5.85 16 39 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 42 H 0.07 1.26 7.53 -2.38 -0.02 1.24 16 Total: -1.00 -66.74 358.41 2.57 -64.17 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: 0.23 Total: 38.53 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 6.19 Total: -28.88 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -4.09 Total: -94.14 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.78 Total: -20.83 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -66.74 2.57 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250187627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.924 kcal (2) G-P(sol) polarization free energy of solvation -66.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds