Wall clock time and date at job start Tue Mar 31 2020 11:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39910 * 125.88217 * 2 1 4 4 C 1.35319 * 107.93271 * 179.77363 * 3 2 1 5 5 N 1.35226 * 107.71468 * 0.42429 * 4 3 2 6 6 C 1.40206 * 126.05701 * 179.83903 * 5 4 3 7 7 C 1.38968 * 119.99280 * 359.73491 * 6 5 4 8 8 C 1.38223 * 120.23728 * 180.02562 * 7 6 5 9 9 C 1.38007 * 120.22291 * 359.97438 * 8 7 6 10 10 C 1.39630 * 119.98023 * 359.70454 * 9 8 7 11 11 C 1.47745 * 120.11365 * 180.31450 * 10 9 8 12 12 O 1.21468 * 119.99387 * 180.25387 * 11 10 9 13 13 O 1.34709 * 120.00296 * 0.26079 * 11 10 9 14 14 C 1.45196 * 117.00184 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47272 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46960 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46793 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00381 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00311 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99922 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47109 * 90.00320 * 21 19 17 23 23 H 1.48506 * 109.46798 * 210.00227 * 21 19 17 24 24 H 1.48491 * 109.46959 * 330.00129 * 21 19 17 25 25 C 1.38546 * 119.99276 * 179.71884 * 6 5 4 26 26 N 1.30875 * 125.87387 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46701 * 269.98552 * 1 2 3 28 28 H 1.09002 * 109.47009 * 29.98086 * 1 2 3 29 29 H 1.08994 * 109.47451 * 149.98142 * 1 2 3 30 30 H 1.08001 * 126.03717 * 0.03577 * 3 2 1 31 31 H 1.08007 * 126.14842 * 180.28223 * 4 3 2 32 32 H 1.08002 * 119.87901 * 0.02562 * 7 6 5 33 33 H 1.08006 * 119.88814 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.00503 * 180.02562 * 9 8 7 35 35 H 1.09009 * 109.46873 * 299.99475 * 14 13 11 36 36 H 1.09001 * 109.47261 * 59.99402 * 14 13 11 37 37 H 1.08995 * 109.46672 * 299.99451 * 15 14 13 38 38 H 1.08996 * 109.47229 * 59.99917 * 15 14 13 39 39 H 1.09001 * 109.47337 * 299.99762 * 16 15 14 40 40 H 1.09001 * 109.47262 * 59.99604 * 16 15 14 41 41 H 0.96994 * 120.00363 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.10850 * 359.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1336 0.0000 4 6 3.6144 0.7166 0.0051 5 7 3.6089 -0.6357 -0.0013 6 6 4.7390 -1.4655 -0.0023 7 6 6.0113 -0.9066 -0.0018 8 6 7.1289 -1.7199 -0.0032 9 6 6.9889 -3.0929 -0.0046 10 6 5.7149 -3.6643 0.0017 11 6 5.5616 -5.1338 0.0073 12 8 4.4523 -5.6286 0.0080 13 8 6.6520 -5.9248 0.0116 14 6 6.4259 -7.3590 0.0175 15 6 7.7714 -8.0874 0.0211 16 6 7.5331 -9.5987 0.0280 17 6 8.8584 -10.3161 0.0309 18 1 9.7785 -9.7507 0.0278 19 6 8.8962 -11.6944 0.0366 20 7 10.0527 -12.3205 0.0397 21 14 7.3046 -12.6724 0.0414 22 1 6.8823 -12.9374 -1.3573 23 1 7.5180 -13.9617 0.7467 24 1 6.2485 -11.8956 0.7386 25 6 4.5870 -2.8426 -0.0033 26 7 2.2740 -1.0605 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5141 30 1 1.9919 2.1603 0.0005 31 1 4.4893 1.3499 0.0107 32 1 6.1272 0.1672 -0.0003 33 1 8.1151 -1.2795 -0.0024 34 1 7.8645 -3.7251 -0.0053 35 1 5.8611 -7.6341 0.9083 36 1 5.8625 -7.6417 -0.8717 37 1 8.3358 -7.8123 -0.8698 38 1 8.3352 -7.8048 0.9101 39 1 6.9688 -9.8735 0.9191 40 1 6.9691 -9.8817 -0.8608 41 1 10.0793 -13.2901 0.0433 42 1 3.5989 -3.2786 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320480937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:17 Heat of formation + Delta-G solvation = 10.255981 kcal Electronic energy + Delta-G solvation = -23889.616025 eV Core-core repulsion = 20222.338084 eV Total energy + Delta-G solvation = -3667.277941 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97907 -40.54431 -39.06062 -36.55005 -34.56537 -34.06869 -32.02874 -31.76150 -31.27264 -30.18542 -28.04810 -27.52024 -24.98464 -23.33107 -22.80031 -21.95500 -20.59058 -20.20530 -20.09894 -18.80357 -17.29173 -16.81309 -16.62028 -16.43159 -16.12472 -15.81090 -15.32529 -14.74698 -14.32718 -14.31863 -14.21717 -13.90002 -13.72415 -13.32330 -13.27271 -12.86002 -12.75787 -12.58790 -12.33185 -12.27093 -12.02030 -11.81772 -11.08199 -11.01627 -10.97237 -10.68673 -10.49643 -10.46888 -10.03779 -9.83858 -9.74519 -9.57413 -9.54610 -9.26418 -8.57795 -8.46482 -6.08128 -4.07263 0.17574 0.55392 1.65753 1.88388 2.29968 2.43766 2.66061 3.29492 3.37178 3.39497 3.40723 3.97849 4.17908 4.35018 4.37213 4.42186 4.57096 4.71145 4.76070 4.90210 5.04011 5.17759 5.21103 5.25182 5.27371 5.38884 5.42772 5.43276 5.45570 5.55645 5.75020 5.81701 5.85651 5.89147 6.12589 6.22767 6.29499 6.36499 6.60609 6.70973 6.76755 7.19204 7.23825 7.30771 7.69764 7.78091 8.48290 8.95927 9.53384 11.04942 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.002047 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.523304 B =13676.156645 C =14662.604015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.080 3.920 3 C -0.259 4.259 4 C 0.054 3.946 5 N -0.323 5.323 6 C 0.147 3.853 7 C -0.111 4.111 8 C -0.103 4.103 9 C -0.069 4.069 10 C -0.094 4.094 11 C 0.504 3.496 12 O -0.502 6.502 13 O -0.349 6.349 14 C 0.066 3.934 15 C -0.101 4.101 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.059 4.059 26 N -0.285 5.285 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 31.741 -0.064 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.287 4.287 4 C -0.088 4.088 5 N -0.098 5.098 6 C 0.055 3.945 7 C -0.132 4.132 8 C -0.121 4.121 9 C -0.088 4.088 10 C -0.096 4.096 11 C 0.348 3.652 12 O -0.392 6.392 13 O -0.265 6.265 14 C -0.007 4.007 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.079 4.079 26 N -0.106 5.106 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.172 0.828 31 H 0.196 0.804 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.074 0.926 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.235 30.059 -0.063 32.844 hybrid contribution -0.783 0.202 -0.010 0.809 sum -14.018 30.261 -0.073 33.351 Atomic orbital electron populations 1.20235 0.86065 1.03677 1.03330 1.22603 0.97372 0.90629 0.98166 1.21499 0.91352 1.00110 1.15747 1.22624 1.00130 0.84193 1.01846 1.45746 1.04238 1.04153 1.55623 1.17287 0.83849 0.89490 1.03902 1.21045 0.90053 1.00929 1.01179 1.21006 0.98590 0.92932 0.99602 1.21682 0.97056 0.95458 0.94613 1.19034 0.94061 0.90036 1.06447 1.20952 0.83067 0.87790 0.73414 1.90848 1.26709 1.76297 1.45298 1.86526 1.35335 1.21458 1.83221 1.23570 1.01160 0.73589 1.02342 1.21568 0.92979 0.96442 1.02887 1.19527 0.98412 0.90172 0.96736 1.21043 0.92111 0.91562 1.51267 0.90779 1.25015 0.96126 0.97817 0.94445 1.69901 1.24519 1.08750 1.50802 0.86788 0.84392 0.79584 0.78612 1.20193 1.21267 1.18970 1.20928 1.00084 0.90527 0.96378 1.77514 0.85397 1.22675 1.25009 0.90154 0.90121 0.90566 0.82787 0.80408 0.84623 0.83776 0.83206 0.91304 0.91313 0.91449 0.91428 0.96234 0.96675 0.92634 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 36.01 0.38 -0.07 16 2 C 0.08 0.75 7.22 -82.37 -0.59 0.15 16 3 C -0.26 -1.93 10.74 -40.00 -0.43 -2.36 16 4 C 0.05 0.41 10.80 -17.10 -0.18 0.23 16 5 N -0.32 -3.45 3.80 -10.73 -0.04 -3.49 16 6 C 0.15 1.53 6.68 -83.64 -0.56 0.97 16 7 C -0.11 -0.81 9.45 -39.32 -0.37 -1.18 16 8 C -0.10 -0.72 10.02 -39.67 -0.40 -1.12 16 9 C -0.07 -0.66 9.61 -39.15 -0.38 -1.04 16 10 C -0.09 -1.17 5.87 -105.00 -0.62 -1.79 16 11 C 0.50 7.87 7.90 34.62 0.27 8.14 16 12 O -0.50 -9.19 16.13 -19.24 -0.31 -9.50 16 13 O -0.35 -5.58 9.47 -40.52 -0.38 -5.97 16 14 C 0.07 1.15 5.47 37.16 0.20 1.36 16 15 C -0.10 -1.98 5.53 -26.73 -0.15 -2.13 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 21 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 25 C -0.06 -0.74 9.21 -38.98 -0.36 -1.10 16 26 N -0.29 -3.50 11.86 33.69 0.40 -3.10 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.18 0.63 7.03 -52.48 -0.37 0.26 16 32 H 0.14 0.55 6.72 -52.49 -0.35 0.20 16 33 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.15 1.32 7.61 -52.49 -0.40 0.92 16 35 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 40 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.15 2.16 7.28 -52.49 -0.38 1.77 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -34.79 364.38 -8.13 -42.92 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.66 Total: -2.96 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.73 Total: -13.56 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 1.13 Total: -33.49 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.69 Total: -15.46 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.79 -8.13 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320480937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.178 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds