Wall clock time and date at job start Tue Mar 31 2020 11:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39910 * 125.88217 * 2 1 4 4 C 1.35319 * 107.93271 * 179.77363 * 3 2 1 5 5 N 1.35226 * 107.71468 * 0.42429 * 4 3 2 6 6 C 1.40206 * 126.05701 * 179.83903 * 5 4 3 7 7 C 1.38968 * 119.99280 * 359.73491 * 6 5 4 8 8 C 1.38223 * 120.23728 * 180.02562 * 7 6 5 9 9 C 1.38007 * 120.22291 * 359.97438 * 8 7 6 10 10 C 1.39630 * 119.98023 * 359.70454 * 9 8 7 11 11 C 1.47745 * 120.11365 * 180.31450 * 10 9 8 12 12 O 1.21468 * 119.99387 * 180.25387 * 11 10 9 13 13 O 1.34709 * 120.00296 * 0.26079 * 11 10 9 14 14 C 1.45196 * 117.00184 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47272 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.46960 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46793 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00381 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00311 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99922 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47109 * 90.00320 * 21 19 17 23 23 H 1.48506 * 109.46798 * 210.00227 * 21 19 17 24 24 H 1.48491 * 109.46959 * 330.00129 * 21 19 17 25 25 C 1.38546 * 119.99276 * 179.71884 * 6 5 4 26 26 N 1.30875 * 125.87387 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46701 * 269.98552 * 1 2 3 28 28 H 1.09002 * 109.47009 * 29.98086 * 1 2 3 29 29 H 1.08994 * 109.47451 * 149.98142 * 1 2 3 30 30 H 1.08001 * 126.03717 * 0.03577 * 3 2 1 31 31 H 1.08007 * 126.14842 * 180.28223 * 4 3 2 32 32 H 1.08002 * 119.87901 * 0.02562 * 7 6 5 33 33 H 1.08006 * 119.88814 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.00503 * 180.02562 * 9 8 7 35 35 H 1.09009 * 109.46873 * 299.99475 * 14 13 11 36 36 H 1.09001 * 109.47261 * 59.99402 * 14 13 11 37 37 H 1.08995 * 109.46672 * 299.99451 * 15 14 13 38 38 H 1.08996 * 109.47229 * 59.99917 * 15 14 13 39 39 H 1.09001 * 109.47337 * 299.99762 * 16 15 14 40 40 H 1.09001 * 109.47262 * 59.99604 * 16 15 14 41 41 H 0.96994 * 120.00363 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.10850 * 359.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1336 0.0000 4 6 3.6144 0.7166 0.0051 5 7 3.6089 -0.6357 -0.0013 6 6 4.7390 -1.4655 -0.0023 7 6 6.0113 -0.9066 -0.0018 8 6 7.1289 -1.7199 -0.0032 9 6 6.9889 -3.0929 -0.0046 10 6 5.7149 -3.6643 0.0017 11 6 5.5616 -5.1338 0.0073 12 8 4.4523 -5.6286 0.0080 13 8 6.6520 -5.9248 0.0116 14 6 6.4259 -7.3590 0.0175 15 6 7.7714 -8.0874 0.0211 16 6 7.5331 -9.5987 0.0280 17 6 8.8584 -10.3161 0.0309 18 1 9.7785 -9.7507 0.0278 19 6 8.8962 -11.6944 0.0366 20 7 10.0527 -12.3205 0.0397 21 14 7.3046 -12.6724 0.0414 22 1 6.8823 -12.9374 -1.3573 23 1 7.5180 -13.9617 0.7467 24 1 6.2485 -11.8956 0.7386 25 6 4.5870 -2.8426 -0.0033 26 7 2.2740 -1.0605 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5141 30 1 1.9919 2.1603 0.0005 31 1 4.4893 1.3499 0.0107 32 1 6.1272 0.1672 -0.0003 33 1 8.1151 -1.2795 -0.0024 34 1 7.8645 -3.7251 -0.0053 35 1 5.8611 -7.6341 0.9083 36 1 5.8625 -7.6417 -0.8717 37 1 8.3358 -7.8123 -0.8698 38 1 8.3352 -7.8048 0.9101 39 1 6.9688 -9.8735 0.9191 40 1 6.9691 -9.8817 -0.8608 41 1 10.0793 -13.2901 0.0433 42 1 3.5989 -3.2786 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320480937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:16 Heat of formation + Delta-G solvation = -9.638566 kcal Electronic energy + Delta-G solvation = -23890.478717 eV Core-core repulsion = 20222.338084 eV Total energy + Delta-G solvation = -3668.140634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.61751 -41.69953 -39.90341 -37.89584 -35.97792 -35.19799 -33.89798 -32.62555 -31.95188 -30.81559 -29.55199 -28.44028 -26.10508 -24.60467 -23.74641 -22.84049 -22.11047 -21.33200 -20.73481 -19.66365 -19.03998 -18.30181 -17.76787 -17.39401 -17.12931 -16.48639 -16.34335 -16.03785 -15.79957 -15.36271 -14.95029 -14.83012 -14.59991 -14.46094 -14.39952 -14.02126 -13.83416 -13.78007 -13.37565 -13.15225 -12.89816 -12.88986 -12.72994 -12.53868 -12.18157 -12.07613 -11.79501 -11.65109 -11.58665 -11.44437 -11.38013 -11.17820 -10.78742 -10.30785 -10.18981 -9.13742 -8.31417 -6.36076 -0.60133 -0.19759 0.98861 1.21757 1.35358 1.36871 1.41986 1.48308 1.51664 1.73930 2.34121 2.60371 3.03656 3.28650 3.46209 3.67089 3.78056 3.94986 3.96022 3.97664 4.01892 4.07017 4.20729 4.33326 4.44301 4.64287 4.69389 4.71159 4.71709 4.75098 4.79377 4.92400 4.93772 5.02823 5.12104 5.13874 5.20559 5.25338 5.44233 5.46742 5.50002 5.60499 5.67624 6.11556 6.24417 6.51628 6.61109 6.71532 7.28304 8.84875 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.002047 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.523304 B =13676.156645 C =14662.604015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.069 3.931 3 C -0.264 4.264 4 C 0.057 3.943 5 N -0.339 5.339 6 C 0.136 3.864 7 C -0.090 4.090 8 C -0.085 4.085 9 C -0.069 4.069 10 C -0.116 4.116 11 C 0.504 3.496 12 O -0.540 6.540 13 O -0.345 6.345 14 C 0.074 3.926 15 C -0.090 4.090 16 C -0.011 4.011 17 C -0.533 4.533 18 H 0.038 0.962 19 C 0.006 3.994 20 N -0.947 5.947 21 Si 0.947 3.053 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.248 1.248 25 C -0.081 4.081 26 N -0.348 5.348 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.185 0.815 31 H 0.223 0.777 32 H 0.180 0.820 33 H 0.188 0.812 34 H 0.157 0.843 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.267 0.733 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 35.162 -0.075 37.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C -0.292 4.292 4 C -0.084 4.084 5 N -0.114 5.114 6 C 0.044 3.956 7 C -0.111 4.111 8 C -0.103 4.103 9 C -0.088 4.088 10 C -0.118 4.118 11 C 0.350 3.650 12 O -0.431 6.431 13 O -0.262 6.262 14 C 0.000 4.000 15 C -0.128 4.128 16 C -0.048 4.048 17 C -0.571 4.571 18 H 0.057 0.943 19 C -0.191 4.191 20 N -0.588 5.588 21 Si 0.771 3.229 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.172 1.172 25 C -0.102 4.102 26 N -0.169 5.169 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.202 0.798 31 H 0.239 0.761 32 H 0.198 0.802 33 H 0.206 0.794 34 H 0.175 0.825 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.494 33.515 -0.075 36.129 hybrid contribution -0.640 -0.684 -0.006 0.937 sum -14.134 32.831 -0.081 35.744 Atomic orbital electron populations 1.20361 0.84423 1.04390 1.04081 1.23249 0.98709 0.90958 0.96916 1.21944 0.91147 1.00900 1.15227 1.23430 1.01843 0.83148 0.99986 1.45881 1.03707 1.05302 1.56550 1.17558 0.85329 0.88721 1.04036 1.21560 0.88254 1.03166 0.98083 1.21493 1.00450 0.91461 0.96940 1.21880 0.95670 0.97137 0.94126 1.18884 0.95569 0.87772 1.09556 1.21599 0.82253 0.89064 0.72078 1.90820 1.27874 1.77105 1.47320 1.86505 1.35619 1.20643 1.83384 1.23279 0.99564 0.74557 1.02576 1.21318 0.94180 0.94326 1.02947 1.19462 0.95885 0.92325 0.97152 1.21381 0.93021 0.91968 1.50682 0.94319 1.25970 0.99878 0.99138 0.94102 1.70046 1.27111 1.09281 1.52351 0.85702 0.80001 0.77980 0.79261 1.19125 1.20823 1.17198 1.20716 0.98668 0.92054 0.98756 1.77478 0.86872 1.24875 1.27652 0.89291 0.87569 0.91645 0.79803 0.76055 0.80245 0.79440 0.82507 0.91183 0.91112 0.91415 0.91443 0.95734 0.95839 0.92389 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.45 71.24 0.74 -0.10 16 2 C 0.07 1.26 7.22 43.11 0.31 1.57 16 3 C -0.26 -3.31 10.74 22.00 0.24 -3.08 16 4 C 0.06 0.69 10.80 83.50 0.90 1.59 16 5 N -0.34 -6.93 3.80 -187.86 -0.71 -7.65 16 6 C 0.14 2.69 6.68 38.05 0.25 2.95 16 7 C -0.09 -0.95 9.45 22.44 0.21 -0.74 16 8 C -0.09 -0.83 10.02 22.21 0.22 -0.61 16 9 C -0.07 -1.20 9.61 22.55 0.22 -0.98 16 10 C -0.12 -2.95 5.87 -20.11 -0.12 -3.07 16 11 C 0.50 16.33 7.90 70.34 0.56 16.88 16 12 O -0.54 -20.91 16.13 19.94 0.32 -20.58 16 13 O -0.35 -11.11 9.47 -56.19 -0.53 -11.64 16 14 C 0.07 2.55 5.47 71.98 0.39 2.95 16 15 C -0.09 -3.52 5.53 30.59 0.17 -3.35 16 16 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 17 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 18 H 0.04 2.43 7.99 -2.92 -0.02 2.40 16 19 C 0.01 0.37 5.47 84.66 0.46 0.83 16 20 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 21 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 25 C -0.08 -2.14 9.21 22.66 0.21 -1.93 16 26 N -0.35 -8.84 11.86 -47.34 -0.56 -9.41 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.22 0.35 7.03 -2.91 -0.02 0.33 16 32 H 0.18 0.29 6.72 -2.91 -0.02 0.27 16 33 H 0.19 0.29 8.06 -2.91 -0.02 0.27 16 34 H 0.16 2.45 7.61 -2.91 -0.02 2.42 16 35 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 40 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 41 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.12 3.83 7.28 -2.91 -0.02 3.81 16 Total: -1.00 -80.86 364.38 6.81 -74.05 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.97 Total: 5.82 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 5.14 Total: -17.92 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -0.98 Total: -76.17 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.21 Total: -32.22 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -80.86 6.81 -74.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320480937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.413 kcal (2) G-P(sol) polarization free energy of solvation -80.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds