Wall clock time and date at job start Tue Mar 31 2020 10:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38368 * 119.84504 * 2 1 4 4 C 1.37927 * 120.16275 * 179.97438 * 3 2 1 5 5 C 1.39687 * 119.83662 * 359.97438 * 4 3 2 6 6 C 1.47584 * 120.15434 * 180.02562 * 5 4 3 7 7 O 1.34762 * 126.76378 * 310.40687 * 6 5 4 8 8 C 1.34043 * 108.23509 * 180.26304 * 7 6 5 9 9 N 1.29932 * 109.78311 * 359.73029 * 8 7 6 10 10 C 1.35885 * 108.73945 * 359.97438 * 9 8 7 11 11 C 1.47131 * 126.61463 * 180.02562 * 10 9 8 12 12 O 1.21653 * 119.99562 * 174.83342 * 11 10 9 13 13 N 1.34780 * 120.00352 * 355.10277 * 11 10 9 14 14 C 1.46501 * 119.99718 * 4.38655 * 13 11 10 15 15 C 1.46499 * 119.99858 * 184.38532 * 13 11 10 16 16 H 1.08992 * 109.47146 * 359.97438 * 15 13 11 17 17 C 1.52994 * 109.46715 * 239.99908 * 15 13 11 18 18 C 1.50702 * 109.46743 * 120.00417 * 15 13 11 19 19 H 1.07996 * 120.00524 * 34.63852 * 18 15 13 20 20 C 1.37882 * 119.99723 * 214.64052 * 18 15 13 21 21 N 1.31509 * 120.00003 * 184.38655 * 20 18 15 22 22 Si 1.86802 * 119.99813 * 4.38160 * 20 18 15 23 23 H 1.48509 * 109.46912 * 94.28606 * 22 20 18 24 24 H 1.48492 * 109.47311 * 214.28612 * 22 20 18 25 25 H 1.48495 * 109.47375 * 334.28966 * 22 20 18 26 26 C 1.39685 * 119.69026 * 0.27861 * 5 4 3 27 27 C 1.37935 * 119.84028 * 359.44566 * 26 5 4 28 28 H 1.08999 * 109.47342 * 90.00529 * 1 2 3 29 29 H 1.09007 * 109.47246 * 209.99753 * 1 2 3 30 30 H 1.09000 * 109.47383 * 329.99984 * 1 2 3 31 31 H 1.08014 * 119.91963 * 359.95618 * 3 2 1 32 32 H 1.07997 * 120.08464 * 179.97438 * 4 3 2 33 33 H 1.08004 * 125.11007 * 179.69478 * 8 7 6 34 34 H 1.08998 * 109.47286 * 84.96934 * 14 13 11 35 35 H 1.09000 * 109.47189 * 204.96758 * 14 13 11 36 36 H 1.09004 * 109.47440 * 324.96740 * 14 13 11 37 37 H 1.09007 * 109.47506 * 304.82758 * 17 15 13 38 38 H 1.08998 * 109.47280 * 64.83462 * 17 15 13 39 39 H 1.09008 * 109.47193 * 184.83069 * 17 15 13 40 40 H 0.97001 * 119.99664 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.07927 * 179.72526 * 26 5 4 42 42 H 1.08007 * 119.92152 * 180.27453 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5748 1.2078 0.0005 5 6 4.2765 0.0000 0.0016 6 6 5.7524 0.0000 0.0028 7 8 6.5596 0.6994 -0.8190 8 6 7.8303 0.4190 -0.4973 9 7 7.8579 -0.4210 0.4936 10 6 6.5807 -0.7159 0.8517 11 6 6.1591 -1.6253 1.9287 12 8 4.9800 -1.7306 2.2090 13 7 7.0796 -2.3375 2.6085 14 6 8.5058 -2.1354 2.3412 15 6 6.6539 -3.3136 3.6146 16 1 5.5656 -3.3236 3.6734 17 6 7.2343 -2.9280 4.9767 18 6 7.1493 -4.6830 3.2269 19 1 8.1019 -4.7920 2.7299 20 6 6.3863 -5.7968 3.5068 21 7 6.8557 -6.9976 3.2472 22 14 4.6859 -5.6002 4.2548 23 1 3.6675 -5.5927 3.1739 24 1 4.4181 -6.7309 5.1794 25 1 4.6202 -4.3207 5.0056 26 6 3.5748 -1.2078 -0.0037 27 6 2.1955 -1.2003 0.0015 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6517 2.1334 -0.0007 32 1 4.1110 2.1453 0.0001 33 1 8.7004 0.8292 -0.9884 34 1 8.8708 -1.2955 2.9323 35 1 9.0571 -3.0362 2.6107 36 1 8.6505 -1.9242 1.2817 37 1 8.3173 -2.8339 4.8968 38 1 6.8095 -1.9765 5.2964 39 1 6.9895 -3.6990 5.7074 40 1 6.3187 -7.7811 3.4438 41 1 4.1110 -2.1454 -0.0074 42 1 1.6516 -2.1334 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518826999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:44 Heat of formation + Delta-G solvation = 25.472523 kcal Electronic energy + Delta-G solvation = -26223.377044 eV Core-core repulsion = 22556.758942 eV Total energy + Delta-G solvation = -3666.618103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.23312 -39.25689 -38.86793 -35.44174 -34.82130 -33.47370 -32.54618 -30.96111 -30.46915 -29.77866 -26.78470 -26.01889 -25.23921 -23.97326 -22.95724 -22.36615 -21.34770 -20.41283 -18.95866 -17.48767 -17.16974 -16.73389 -16.35713 -15.84441 -15.43413 -15.15100 -15.02493 -14.48243 -14.06201 -13.95883 -13.81546 -13.42722 -13.29326 -12.96633 -12.50274 -12.35820 -12.30664 -12.29307 -12.15703 -11.86695 -11.42895 -11.37914 -11.17763 -11.05522 -11.01686 -10.75572 -10.46154 -10.10313 -9.70854 -9.44391 -9.23880 -9.15016 -8.84707 -8.59422 -8.20123 -7.56806 -6.15669 -4.17467 0.70326 1.46723 1.60789 2.24088 2.58425 3.29924 3.38533 3.45873 3.68066 3.78524 3.86786 4.18358 4.38845 4.62601 4.77149 4.86964 4.99097 5.03869 5.23382 5.26184 5.38190 5.46342 5.52739 5.56992 5.71363 5.76331 5.96390 5.99704 6.08601 6.22722 6.27765 6.31925 6.37815 6.48928 6.52335 6.58511 6.62603 6.81731 6.94880 6.97374 7.11256 7.46456 7.57603 7.67014 8.17442 8.51649 8.85836 8.92396 9.46675 10.96229 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.005216 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.642879 B = 5366.752526 C = 7136.350437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.086 4.086 5 C -0.029 4.029 6 C 0.063 3.937 7 O -0.196 6.196 8 C 0.164 3.836 9 N -0.452 5.452 10 C -0.035 4.035 11 C 0.581 3.419 12 O -0.545 6.545 13 N -0.566 5.566 14 C 0.075 3.925 15 C 0.220 3.780 16 H 0.068 0.932 17 C -0.146 4.146 18 C -0.524 4.524 19 H 0.079 0.921 20 C 0.080 3.920 21 N -0.891 5.891 22 Si 0.872 3.128 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.259 1.259 26 C -0.036 4.036 27 C -0.122 4.122 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.253 0.747 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.130 0.870 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 17.250 -8.873 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.071 4.071 3 C -0.150 4.150 4 C -0.105 4.105 5 C -0.030 4.030 6 C 0.008 3.992 7 O -0.082 6.082 8 C -0.063 4.063 9 N -0.181 5.181 10 C -0.157 4.157 11 C 0.366 3.634 12 O -0.425 6.425 13 N -0.295 5.295 14 C -0.068 4.068 15 C 0.120 3.880 16 H 0.086 0.914 17 C -0.204 4.204 18 C -0.562 4.562 19 H 0.097 0.903 20 C -0.124 4.124 21 N -0.528 5.528 22 Si 0.698 3.302 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.183 1.183 26 C -0.054 4.054 27 C -0.140 4.140 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.268 0.732 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.225 16.733 -8.416 19.445 hybrid contribution -0.865 0.245 0.057 0.901 sum -6.090 16.978 -8.359 19.880 Atomic orbital electron populations 1.20825 0.91130 1.02985 1.02275 1.20063 0.96159 0.93139 0.97725 1.20816 0.93512 0.97598 1.03046 1.21130 0.94293 0.96550 0.98494 1.17403 0.84948 0.94564 1.06039 1.21768 0.91386 0.94476 0.91604 1.84426 1.18441 1.55485 1.49854 1.28151 0.85043 0.96999 0.96107 1.70933 1.21852 1.12998 1.12300 1.22385 0.87722 1.03989 1.01569 1.16767 0.85877 0.79843 0.80888 1.90783 1.16594 1.67264 1.67850 1.48179 1.06279 1.37480 1.37564 1.22057 0.81289 1.00568 1.02925 1.19458 0.97435 0.87169 0.83927 0.91444 1.22203 1.00580 0.98826 0.98814 1.21137 1.06853 0.88177 1.40008 0.90290 1.24943 0.97814 0.95022 0.94623 1.69895 1.37613 0.97785 1.47548 0.86910 0.85149 0.78088 0.80005 1.19916 1.21239 1.18321 1.21151 0.93979 0.96981 0.93278 1.20940 0.93625 0.97822 1.01612 0.91082 0.91278 0.91508 0.85767 0.85902 0.73161 0.94259 0.90894 0.88937 0.93292 0.95554 0.92366 0.92432 0.85193 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.00 36.00 0.36 -0.66 16 2 C -0.07 -0.86 5.89 -104.52 -0.62 -1.47 16 3 C -0.13 -1.54 9.68 -39.65 -0.38 -1.92 16 4 C -0.09 -1.14 9.79 -39.15 -0.38 -1.52 16 5 C -0.03 -0.46 5.29 -105.00 -0.56 -1.01 16 6 C 0.06 1.03 6.85 -35.66 -0.24 0.79 16 7 O -0.20 -2.60 10.75 5.13 0.06 -2.54 16 8 C 0.16 1.86 13.16 51.96 0.68 2.54 16 9 N -0.45 -7.03 7.78 -11.04 -0.09 -7.12 16 10 C -0.04 -0.65 6.73 -82.35 -0.55 -1.20 16 11 C 0.58 12.82 7.58 -12.65 -0.10 12.72 16 12 O -0.55 -13.09 13.10 5.23 0.07 -13.02 16 13 N -0.57 -12.75 2.75 -176.64 -0.49 -13.23 16 14 C 0.07 1.44 8.62 59.85 0.52 1.95 16 15 C 0.22 5.48 2.24 -69.08 -0.15 5.32 16 16 H 0.07 1.81 3.89 -51.93 -0.20 1.60 16 17 C -0.15 -3.20 9.25 37.15 0.34 -2.86 16 18 C -0.52 -14.62 8.70 -34.44 -0.30 -14.91 16 19 H 0.08 2.35 6.90 -52.49 -0.36 1.99 16 20 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 21 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 22 Si 0.87 22.09 27.27 -169.99 -4.64 17.45 16 23 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.26 -6.40 6.42 56.52 0.36 -6.04 16 26 C -0.04 -0.59 7.70 -39.15 -0.30 -0.89 16 27 C -0.12 -1.72 9.68 -39.64 -0.38 -2.10 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.25 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 36 H 0.09 1.68 5.13 -51.93 -0.27 1.42 16 37 H 0.05 1.00 7.51 -51.93 -0.39 0.61 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.13 2.35 7.52 -52.48 -0.39 1.95 16 42 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -33.87 349.70 -6.56 -40.43 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.35 Total: 1.90 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.17 Total: -3.04 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.20 Total: -46.44 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.12 Total: -15.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.64 Total: 17.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.87 -6.56 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518826999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.902 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds