Wall clock time and date at job start Tue Mar 31 2020 10:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38368 * 119.84504 * 2 1 4 4 C 1.37927 * 120.16275 * 179.97438 * 3 2 1 5 5 C 1.39687 * 119.83662 * 359.97438 * 4 3 2 6 6 C 1.47584 * 120.15434 * 180.02562 * 5 4 3 7 7 O 1.34762 * 126.76378 * 310.40687 * 6 5 4 8 8 C 1.34043 * 108.23509 * 180.26304 * 7 6 5 9 9 N 1.29932 * 109.78311 * 359.73029 * 8 7 6 10 10 C 1.35885 * 108.73945 * 359.97438 * 9 8 7 11 11 C 1.47131 * 126.61463 * 180.02562 * 10 9 8 12 12 O 1.21653 * 119.99562 * 174.83342 * 11 10 9 13 13 N 1.34780 * 120.00352 * 355.10277 * 11 10 9 14 14 C 1.46501 * 119.99718 * 4.38655 * 13 11 10 15 15 C 1.46499 * 119.99858 * 184.38532 * 13 11 10 16 16 H 1.08992 * 109.47146 * 359.97438 * 15 13 11 17 17 C 1.52994 * 109.46715 * 239.99908 * 15 13 11 18 18 C 1.50702 * 109.46743 * 120.00417 * 15 13 11 19 19 H 1.07996 * 120.00524 * 34.63852 * 18 15 13 20 20 C 1.37882 * 119.99723 * 214.64052 * 18 15 13 21 21 N 1.31509 * 120.00003 * 184.38655 * 20 18 15 22 22 Si 1.86802 * 119.99813 * 4.38160 * 20 18 15 23 23 H 1.48509 * 109.46912 * 94.28606 * 22 20 18 24 24 H 1.48492 * 109.47311 * 214.28612 * 22 20 18 25 25 H 1.48495 * 109.47375 * 334.28966 * 22 20 18 26 26 C 1.39685 * 119.69026 * 0.27861 * 5 4 3 27 27 C 1.37935 * 119.84028 * 359.44566 * 26 5 4 28 28 H 1.08999 * 109.47342 * 90.00529 * 1 2 3 29 29 H 1.09007 * 109.47246 * 209.99753 * 1 2 3 30 30 H 1.09000 * 109.47383 * 329.99984 * 1 2 3 31 31 H 1.08014 * 119.91963 * 359.95618 * 3 2 1 32 32 H 1.07997 * 120.08464 * 179.97438 * 4 3 2 33 33 H 1.08004 * 125.11007 * 179.69478 * 8 7 6 34 34 H 1.08998 * 109.47286 * 84.96934 * 14 13 11 35 35 H 1.09000 * 109.47189 * 204.96758 * 14 13 11 36 36 H 1.09004 * 109.47440 * 324.96740 * 14 13 11 37 37 H 1.09007 * 109.47506 * 304.82758 * 17 15 13 38 38 H 1.08998 * 109.47280 * 64.83462 * 17 15 13 39 39 H 1.09008 * 109.47193 * 184.83069 * 17 15 13 40 40 H 0.97001 * 119.99664 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.07927 * 179.72526 * 26 5 4 42 42 H 1.08007 * 119.92152 * 180.27453 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5748 1.2078 0.0005 5 6 4.2765 0.0000 0.0016 6 6 5.7524 0.0000 0.0028 7 8 6.5596 0.6994 -0.8190 8 6 7.8303 0.4190 -0.4973 9 7 7.8579 -0.4210 0.4936 10 6 6.5807 -0.7159 0.8517 11 6 6.1591 -1.6253 1.9287 12 8 4.9800 -1.7306 2.2090 13 7 7.0796 -2.3375 2.6085 14 6 8.5058 -2.1354 2.3412 15 6 6.6539 -3.3136 3.6146 16 1 5.5656 -3.3236 3.6734 17 6 7.2343 -2.9280 4.9767 18 6 7.1493 -4.6830 3.2269 19 1 8.1019 -4.7920 2.7299 20 6 6.3863 -5.7968 3.5068 21 7 6.8557 -6.9976 3.2472 22 14 4.6859 -5.6002 4.2548 23 1 3.6675 -5.5927 3.1739 24 1 4.4181 -6.7309 5.1794 25 1 4.6202 -4.3207 5.0056 26 6 3.5748 -1.2078 -0.0037 27 6 2.1955 -1.2003 0.0015 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6517 2.1334 -0.0007 32 1 4.1110 2.1453 0.0001 33 1 8.7004 0.8292 -0.9884 34 1 8.8708 -1.2955 2.9323 35 1 9.0571 -3.0362 2.6107 36 1 8.6505 -1.9242 1.2817 37 1 8.3173 -2.8339 4.8968 38 1 6.8095 -1.9765 5.2964 39 1 6.9895 -3.6990 5.7074 40 1 6.3187 -7.7811 3.4438 41 1 4.1110 -2.1454 -0.0074 42 1 1.6516 -2.1334 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518826999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:43 Heat of formation + Delta-G solvation = 3.210600 kcal Electronic energy + Delta-G solvation = -26224.342394 eV Core-core repulsion = 22556.758942 eV Total energy + Delta-G solvation = -3667.583452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.35935 -40.67830 -40.15374 -37.23846 -36.04706 -34.63065 -34.47030 -32.25298 -31.98943 -30.95336 -27.90651 -27.54169 -27.28098 -25.36456 -24.00591 -23.42642 -22.71110 -21.72210 -20.50660 -19.28384 -18.68015 -17.97342 -17.77150 -17.43592 -16.68991 -16.31142 -16.17209 -16.13914 -15.72802 -15.19693 -14.85502 -14.62485 -14.49875 -14.41031 -14.36245 -14.18297 -13.89639 -13.50280 -13.16957 -13.09390 -13.04922 -12.90256 -12.73387 -12.49324 -12.36055 -12.30685 -12.01773 -11.84387 -11.47836 -11.23114 -10.93950 -10.80536 -10.41384 -9.92989 -9.44478 -9.19669 -8.39315 -6.43984 -0.44885 0.41337 0.50000 1.09764 1.25056 1.30597 1.41516 1.48995 2.15235 2.25640 2.31459 2.70990 2.98912 3.13811 3.50557 3.70068 3.86393 3.95510 3.99699 4.25508 4.31626 4.42470 4.46657 4.53988 4.57757 4.66050 4.72339 4.77677 4.79959 4.83157 4.85984 4.94089 5.06588 5.09285 5.22188 5.29066 5.35218 5.39771 5.45038 5.49622 5.59916 5.79257 5.95801 6.10949 6.42767 6.60776 6.67801 7.16090 7.27782 8.76225 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.005216 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.642879 B = 5366.752526 C = 7136.350437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 C -0.126 4.126 4 C -0.085 4.085 5 C -0.056 4.056 6 C 0.072 3.928 7 O -0.188 6.188 8 C 0.201 3.799 9 N -0.483 5.483 10 C -0.070 4.070 11 C 0.573 3.427 12 O -0.575 6.575 13 N -0.580 5.580 14 C 0.083 3.917 15 C 0.222 3.778 16 H 0.047 0.953 17 C -0.138 4.138 18 C -0.522 4.522 19 H 0.050 0.950 20 C 0.031 3.969 21 N -0.933 5.933 22 Si 0.925 3.075 23 H -0.281 1.281 24 H -0.272 1.272 25 H -0.250 1.250 26 C -0.062 4.062 27 C -0.139 4.139 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.314 0.686 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.269 0.731 41 H 0.095 0.905 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 20.747 -9.582 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.067 4.067 3 C -0.144 4.144 4 C -0.103 4.103 5 C -0.057 4.057 6 C 0.015 3.985 7 O -0.074 6.074 8 C -0.026 4.026 9 N -0.211 5.211 10 C -0.190 4.190 11 C 0.361 3.639 12 O -0.456 6.456 13 N -0.309 5.309 14 C -0.060 4.060 15 C 0.120 3.880 16 H 0.065 0.935 17 C -0.197 4.197 18 C -0.560 4.560 19 H 0.068 0.932 20 C -0.169 4.169 21 N -0.572 5.572 22 Si 0.750 3.250 23 H -0.207 1.207 24 H -0.197 1.197 25 H -0.174 1.174 26 C -0.081 4.081 27 C -0.157 4.157 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.328 0.672 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.099 20.236 -9.113 23.016 hybrid contribution -0.538 -0.730 0.123 0.915 sum -6.637 19.506 -8.990 22.480 Atomic orbital electron populations 1.20902 0.88484 1.03942 1.03698 1.20475 0.98061 0.92401 0.95801 1.21282 0.93105 0.98894 1.01099 1.21441 0.95161 0.96250 0.97484 1.17593 0.85022 0.95313 1.07740 1.21808 0.91822 0.93796 0.91066 1.84479 1.18955 1.54959 1.49052 1.29489 0.85520 0.93928 0.93644 1.70782 1.20536 1.15235 1.14555 1.21845 0.89647 1.05314 1.02146 1.17236 0.85372 0.80021 0.81269 1.90743 1.17733 1.68350 1.68783 1.48133 1.07680 1.37409 1.37640 1.22108 0.79372 1.00387 1.04114 1.19255 0.96316 0.86434 0.85983 0.93471 1.22071 1.01281 0.99475 0.96840 1.21315 1.05658 0.90049 1.39022 0.93198 1.25619 1.01094 0.94757 0.95394 1.69994 1.39150 0.98577 1.49482 0.86055 0.80815 0.78768 0.79360 1.20659 1.19700 1.17404 1.21015 0.95077 0.96179 0.95818 1.21123 0.92912 0.99349 1.02273 0.89267 0.91344 0.89566 0.81992 0.83651 0.67160 0.92270 0.92526 0.87803 0.92098 0.93910 0.92585 0.92138 0.88676 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.00 71.24 0.71 -0.96 16 2 C -0.07 -1.50 5.89 -19.80 -0.12 -1.62 16 3 C -0.13 -2.57 9.68 22.23 0.22 -2.35 16 4 C -0.09 -2.08 9.79 22.55 0.22 -1.85 16 5 C -0.06 -1.77 5.29 -20.11 -0.11 -1.88 16 6 C 0.07 2.31 6.85 24.81 0.17 2.48 16 7 O -0.19 -4.51 10.75 -4.55 -0.05 -4.56 16 8 C 0.20 3.86 13.16 130.52 1.72 5.58 16 9 N -0.48 -14.28 7.78 -303.75 -2.36 -16.64 16 10 C -0.07 -2.59 6.73 40.92 0.28 -2.32 16 11 C 0.57 26.12 7.58 86.58 0.66 26.78 16 12 O -0.57 -28.80 13.10 -4.20 -0.05 -28.86 16 13 N -0.58 -26.74 2.75 -831.01 -2.29 -29.02 16 14 C 0.08 3.20 8.62 127.77 1.10 4.30 16 15 C 0.22 11.27 2.24 44.24 0.10 11.37 16 16 H 0.05 2.59 3.89 -2.39 -0.01 2.58 16 17 C -0.14 -6.04 9.25 71.98 0.67 -5.38 16 18 C -0.52 -30.23 8.70 25.60 0.22 -30.01 16 19 H 0.05 3.12 6.90 -2.91 -0.02 3.10 16 20 C 0.03 1.84 5.47 84.66 0.46 2.30 16 21 N -0.93 -58.06 13.96 21.45 0.30 -57.76 16 22 Si 0.93 46.73 27.27 68.60 1.87 48.60 16 23 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.25 -12.18 6.42 99.48 0.64 -11.54 16 26 C -0.06 -2.16 7.70 22.55 0.17 -1.98 16 27 C -0.14 -3.98 9.68 22.23 0.22 -3.77 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.04 8.08 -2.38 -0.02 1.02 16 30 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 31 H 0.16 2.06 8.06 -2.90 -0.02 2.04 16 32 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.31 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.33 6.62 -2.39 -0.02 2.32 16 36 H 0.10 3.79 5.13 -2.39 -0.01 3.77 16 37 H 0.06 2.47 7.51 -2.38 -0.02 2.45 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.09 3.82 7.52 -2.91 -0.02 3.80 16 42 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -78.39 349.70 5.07 -73.31 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.97 Total: 14.25 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.69 Total: 0.67 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.35 Total: -103.43 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.10 Total: -33.41 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.87 Total: 48.60 kcal Total: -78.39 5.07 -73.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518826999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.524 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds