Wall clock time and date at job start Tue Mar 31 2020 11:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35126 * 126.44116 * 2 1 4 4 O 1.33930 * 108.76607 * 179.97438 * 3 2 1 5 5 C 1.34912 * 109.38338 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98309 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00074 * 186.00839 * 6 5 4 8 8 N 1.34772 * 120.00702 * 6.00948 * 6 5 4 9 9 C 1.46503 * 119.99686 * 5.19855 * 8 6 5 10 10 C 1.50708 * 109.46980 * 275.45763 * 9 8 6 11 11 H 1.07996 * 119.99731 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99881 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00421 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99716 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47312 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47310 * 120.00105 * 14 12 10 17 17 H 1.48507 * 109.47037 * 239.99819 * 14 12 10 18 18 C 1.46501 * 120.00516 * 185.19379 * 8 6 5 19 19 C 1.50702 * 109.46966 * 270.00185 * 18 8 6 20 20 C 1.38224 * 119.61837 * 94.98311 * 19 18 8 21 21 C 1.38632 * 119.15937 * 179.78930 * 20 19 18 22 22 C 1.38670 * 118.42176 * 0.46916 * 21 20 19 23 23 C 1.38181 * 119.16040 * 359.50527 * 22 21 20 24 24 N 1.31852 * 119.61773 * 274.99791 * 19 18 8 25 25 C 1.36542 * 108.02793 * 0.23520 * 5 4 3 26 26 C 1.50700 * 126.64692 * 179.77224 * 25 5 4 27 27 H 1.08995 * 109.47799 * 90.02814 * 1 2 3 28 28 H 1.09008 * 109.46878 * 210.02552 * 1 2 3 29 29 H 1.09007 * 109.47173 * 330.02460 * 1 2 3 30 30 H 1.07998 * 125.61563 * 359.97218 * 3 2 1 31 31 H 1.09001 * 109.47215 * 35.45412 * 9 8 6 32 32 H 1.08993 * 109.47499 * 155.45890 * 9 8 6 33 33 H 0.97002 * 120.00360 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.46975 * 150.00577 * 18 8 6 35 35 H 1.08995 * 109.47135 * 30.00423 * 18 8 6 36 36 H 1.08004 * 120.41999 * 359.97438 * 20 19 18 37 37 H 1.08003 * 120.78448 * 180.22466 * 21 20 19 38 38 H 1.07997 * 120.42069 * 179.78319 * 22 21 20 39 39 H 1.08000 * 119.61536 * 180.25625 * 23 22 21 40 40 H 1.09000 * 109.47024 * 90.00150 * 26 25 5 41 41 H 1.09001 * 109.47057 * 209.99828 * 26 25 5 42 42 H 1.08994 * 109.47304 * 329.99831 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8378 -1.4940 0.0018 7 8 4.7504 -2.7029 -0.1076 8 7 6.0485 -0.9144 0.1233 9 6 6.1494 0.5263 0.3692 10 6 6.0761 1.2660 -0.9419 11 1 5.9650 0.7177 -1.8656 12 6 6.1498 2.6426 -0.9617 13 7 6.2836 3.3103 0.1633 14 14 6.0583 3.5593 -2.5867 15 1 5.9074 2.5849 -3.6971 16 1 4.8909 4.4772 -2.5722 17 1 7.3032 4.3450 -2.7826 18 6 7.2635 -1.7249 0.0097 19 6 7.6530 -2.2399 1.3714 20 6 7.2434 -3.4990 1.7684 21 6 7.6108 -3.9649 3.0213 22 6 8.3715 -3.1395 3.8355 23 6 8.7442 -1.8929 3.3703 24 7 8.3802 -1.4841 2.1704 25 6 2.3407 -1.1292 -0.0038 26 6 1.9024 -2.5710 -0.0097 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3634 0.8903 0.5135 30 1 1.9769 2.1145 -0.0004 31 1 5.3281 0.8437 1.0117 32 1 7.0986 0.7460 0.8576 33 1 6.3351 4.2789 0.1494 34 1 8.0716 -1.1138 -0.3924 35 1 7.0778 -2.5665 -0.6576 36 1 6.6473 -4.1131 1.1097 37 1 7.3083 -4.9460 3.3568 38 1 8.6727 -3.4686 4.8191 39 1 9.3402 -1.2457 3.9966 40 1 1.7936 -2.9219 1.0166 41 1 0.9467 -2.6581 -0.5266 42 1 2.6497 -3.1759 -0.5232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645767096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:37 Heat of formation + Delta-G solvation = 15.956946 kcal Electronic energy + Delta-G solvation = -26507.554369 eV Core-core repulsion = 22840.523640 eV Total energy + Delta-G solvation = -3667.030729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03740 -40.02556 -38.62332 -35.40182 -34.07985 -32.79642 -32.17667 -31.53650 -30.84568 -27.80927 -27.32242 -26.78678 -25.67230 -23.36510 -22.98784 -22.37354 -21.10748 -19.52679 -18.49102 -16.88008 -16.57120 -16.32445 -15.94417 -15.58366 -15.47121 -15.29402 -15.20514 -14.39278 -14.00764 -13.59876 -13.58025 -13.07011 -13.00664 -12.86784 -12.70922 -12.50495 -12.30760 -12.21554 -12.09327 -11.81110 -11.55316 -11.50207 -11.17137 -11.06900 -10.90361 -10.59596 -10.16161 -9.77313 -9.64461 -9.40220 -9.15994 -8.81860 -8.77887 -8.43625 -8.04448 -7.68753 -6.06521 -4.10478 1.29369 1.51494 1.78641 2.82244 3.26145 3.34574 3.38869 3.47830 3.79771 3.91513 4.26950 4.42152 4.59915 4.97124 5.03537 5.15451 5.21427 5.25891 5.28354 5.33798 5.38222 5.58430 5.72238 5.77394 5.81026 5.82168 6.00511 6.02030 6.07070 6.16555 6.18071 6.33383 6.35037 6.39068 6.55093 6.60471 6.73578 6.91864 6.99866 7.38535 7.47227 7.71977 7.86742 8.15954 8.20051 8.31779 8.77156 8.94685 9.53390 11.01242 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.006133 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.945338 B = 4564.145720 C = 6692.272060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.213 4.213 3 C -0.012 4.012 4 O -0.095 6.095 5 C -0.058 4.058 6 C 0.599 3.401 7 O -0.554 6.554 8 N -0.578 5.578 9 C 0.237 3.763 10 C -0.519 4.519 11 H 0.058 0.942 12 C 0.069 3.931 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.169 3.831 19 C 0.118 3.882 20 C -0.149 4.149 21 C -0.084 4.084 22 C -0.181 4.181 23 C 0.095 3.905 24 N -0.464 5.464 25 C -0.114 4.114 26 C -0.085 4.085 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.196 0.804 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.262 0.738 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 -9.977 4.380 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.215 4.215 3 C -0.085 4.085 4 O 0.014 5.986 5 C -0.111 4.111 6 C 0.388 3.612 7 O -0.437 6.437 8 N -0.306 5.306 9 C 0.118 3.882 10 C -0.558 4.558 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.045 3.955 19 C -0.021 4.021 20 C -0.170 4.170 21 C -0.110 4.110 22 C -0.201 4.201 23 C -0.063 4.063 24 N -0.173 5.173 25 C -0.117 4.117 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.213 0.787 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.265 -9.361 4.096 10.727 hybrid contribution -0.478 0.091 -0.404 0.632 sum -3.742 -9.270 3.692 10.657 Atomic orbital electron populations 1.20058 0.89623 1.01962 1.01489 1.20172 0.96856 0.92314 1.12111 1.24205 0.81798 0.99543 1.02904 1.84832 1.26349 1.20252 1.67146 1.21703 0.94916 0.81675 1.12850 1.16696 0.81820 0.85788 0.76895 1.90690 1.86278 1.12871 1.53863 1.48173 1.03274 1.11593 1.67568 1.19664 0.99177 0.71960 0.97414 1.21370 1.50342 0.91431 0.92685 0.92409 1.24820 0.95047 0.97293 0.96214 1.69947 1.49839 1.07497 1.25569 0.86565 0.77644 0.79844 0.84136 1.19800 1.20995 1.20957 1.20207 0.88395 0.96227 0.90671 1.21829 0.92802 0.90444 0.96986 1.22134 1.00121 0.97426 0.97299 1.21548 0.95984 0.99624 0.93842 1.22093 1.00783 0.96261 1.00936 1.22758 0.97083 0.93994 0.92464 1.67580 1.10590 1.34861 1.04306 1.20281 0.90978 0.96675 1.03751 1.20282 1.01238 0.90784 1.01836 0.92049 0.91989 0.92035 0.78684 0.93932 0.93315 0.92852 0.88230 0.89095 0.84271 0.85255 0.85287 0.83031 0.91957 0.92382 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.16 36.01 0.37 -0.56 16 2 C -0.21 -3.57 6.14 -104.93 -0.64 -4.22 16 3 C -0.01 -0.22 12.00 29.63 0.36 0.13 16 4 O -0.09 -2.12 6.35 5.00 0.03 -2.09 16 5 C -0.06 -1.25 6.64 -36.80 -0.24 -1.49 16 6 C 0.60 13.13 7.58 -12.87 -0.10 13.03 16 7 O -0.55 -11.82 14.09 5.19 0.07 -11.74 16 8 N -0.58 -12.72 2.45 -177.98 -0.44 -13.15 16 9 C 0.24 5.94 4.75 -5.19 -0.02 5.91 16 10 C -0.52 -13.83 7.74 -34.44 -0.27 -14.10 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 14 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.17 3.21 5.65 -5.19 -0.03 3.18 16 19 C 0.12 2.12 6.36 -82.59 -0.53 1.59 16 20 C -0.15 -2.32 9.72 -39.44 -0.38 -2.71 16 21 C -0.08 -1.09 10.18 -39.28 -0.40 -1.49 16 22 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 23 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 24 N -0.46 -8.49 10.27 -9.47 -0.10 -8.59 16 25 C -0.11 -2.12 6.20 -104.43 -0.65 -2.77 16 26 C -0.08 -1.33 9.65 36.01 0.35 -0.99 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.70 8.06 -51.92 -0.42 0.29 16 29 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.20 2.93 8.06 -52.49 -0.42 2.51 16 31 H 0.04 1.15 5.97 -51.93 -0.31 0.84 16 32 H 0.05 1.31 8.03 -51.93 -0.42 0.90 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.10 1.90 8.07 -51.93 -0.42 1.48 16 35 H 0.09 1.58 7.40 -51.93 -0.38 1.20 16 36 H 0.14 2.10 7.80 -52.48 -0.41 1.69 16 37 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 42 H 0.08 1.45 6.34 -51.93 -0.33 1.12 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -31.12 359.35 -7.79 -38.91 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.61 Total: 3.71 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.89 Total: -4.19 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.20 Total: -45.99 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.10 Total: -13.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.12 -7.79 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645767096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.869 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds