Wall clock time and date at job start Tue Mar 31 2020 11:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35126 * 126.44116 * 2 1 4 4 O 1.33930 * 108.76607 * 179.97438 * 3 2 1 5 5 C 1.34912 * 109.38338 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98309 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00074 * 186.00839 * 6 5 4 8 8 N 1.34772 * 120.00702 * 6.00948 * 6 5 4 9 9 C 1.46503 * 119.99686 * 5.19855 * 8 6 5 10 10 C 1.50708 * 109.46980 * 275.45763 * 9 8 6 11 11 H 1.07996 * 119.99731 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99881 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00421 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99716 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47312 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47310 * 120.00105 * 14 12 10 17 17 H 1.48507 * 109.47037 * 239.99819 * 14 12 10 18 18 C 1.46501 * 120.00516 * 185.19379 * 8 6 5 19 19 C 1.50702 * 109.46966 * 270.00185 * 18 8 6 20 20 C 1.38224 * 119.61837 * 94.98311 * 19 18 8 21 21 C 1.38632 * 119.15937 * 179.78930 * 20 19 18 22 22 C 1.38670 * 118.42176 * 0.46916 * 21 20 19 23 23 C 1.38181 * 119.16040 * 359.50527 * 22 21 20 24 24 N 1.31852 * 119.61773 * 274.99791 * 19 18 8 25 25 C 1.36542 * 108.02793 * 0.23520 * 5 4 3 26 26 C 1.50700 * 126.64692 * 179.77224 * 25 5 4 27 27 H 1.08995 * 109.47799 * 90.02814 * 1 2 3 28 28 H 1.09008 * 109.46878 * 210.02552 * 1 2 3 29 29 H 1.09007 * 109.47173 * 330.02460 * 1 2 3 30 30 H 1.07998 * 125.61563 * 359.97218 * 3 2 1 31 31 H 1.09001 * 109.47215 * 35.45412 * 9 8 6 32 32 H 1.08993 * 109.47499 * 155.45890 * 9 8 6 33 33 H 0.97002 * 120.00360 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.46975 * 150.00577 * 18 8 6 35 35 H 1.08995 * 109.47135 * 30.00423 * 18 8 6 36 36 H 1.08004 * 120.41999 * 359.97438 * 20 19 18 37 37 H 1.08003 * 120.78448 * 180.22466 * 21 20 19 38 38 H 1.07997 * 120.42069 * 179.78319 * 22 21 20 39 39 H 1.08000 * 119.61536 * 180.25625 * 23 22 21 40 40 H 1.09000 * 109.47024 * 90.00150 * 26 25 5 41 41 H 1.09001 * 109.47057 * 209.99828 * 26 25 5 42 42 H 1.08994 * 109.47304 * 329.99831 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8378 -1.4940 0.0018 7 8 4.7504 -2.7029 -0.1076 8 7 6.0485 -0.9144 0.1233 9 6 6.1494 0.5263 0.3692 10 6 6.0761 1.2660 -0.9419 11 1 5.9650 0.7177 -1.8656 12 6 6.1498 2.6426 -0.9617 13 7 6.2836 3.3103 0.1633 14 14 6.0583 3.5593 -2.5867 15 1 5.9074 2.5849 -3.6971 16 1 4.8909 4.4772 -2.5722 17 1 7.3032 4.3450 -2.7826 18 6 7.2635 -1.7249 0.0097 19 6 7.6530 -2.2399 1.3714 20 6 7.2434 -3.4990 1.7684 21 6 7.6108 -3.9649 3.0213 22 6 8.3715 -3.1395 3.8355 23 6 8.7442 -1.8929 3.3703 24 7 8.3802 -1.4841 2.1704 25 6 2.3407 -1.1292 -0.0038 26 6 1.9024 -2.5710 -0.0097 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3634 0.8903 0.5135 30 1 1.9769 2.1145 -0.0004 31 1 5.3281 0.8437 1.0117 32 1 7.0986 0.7460 0.8576 33 1 6.3351 4.2789 0.1494 34 1 8.0716 -1.1138 -0.3924 35 1 7.0778 -2.5665 -0.6576 36 1 6.6473 -4.1131 1.1097 37 1 7.3083 -4.9460 3.3568 38 1 8.6727 -3.4686 4.8191 39 1 9.3402 -1.2457 3.9966 40 1 1.7936 -2.9219 1.0166 41 1 0.9467 -2.6581 -0.5266 42 1 2.6497 -3.1759 -0.5232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645767096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:34 Heat of formation + Delta-G solvation = -1.622979 kcal Electronic energy + Delta-G solvation = -26508.316691 eV Core-core repulsion = 22840.523640 eV Total energy + Delta-G solvation = -3667.793052 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -43.52540 -41.30358 -40.18507 -37.08033 -35.49009 -34.70237 -33.39158 -32.96953 -32.13794 -29.44808 -28.93999 -28.02947 -27.13857 -25.08087 -24.34446 -23.79051 -22.50881 -20.94428 -20.07196 -18.74057 -18.02143 -17.76360 -17.41934 -17.13474 -16.90884 -16.84893 -16.43754 -16.26106 -15.47657 -15.06605 -14.82246 -14.38132 -14.29109 -14.18941 -14.11028 -13.94266 -13.69697 -13.62219 -13.50972 -13.09558 -13.04723 -12.96107 -12.79694 -12.63355 -12.47656 -12.35127 -12.10708 -11.72668 -11.05154 -10.80417 -10.58068 -10.40293 -10.16528 -9.97099 -9.65914 -9.27963 -8.14809 -6.26242 0.11979 0.23306 0.39994 1.37585 1.40237 1.45706 1.51376 1.97696 2.21542 2.35748 2.48902 2.98414 3.16476 3.36795 3.67554 3.83259 3.90048 4.00194 4.03105 4.18809 4.26022 4.36511 4.46957 4.51964 4.56458 4.74583 4.80669 4.81281 4.85713 4.88979 4.92204 5.07089 5.13647 5.18940 5.23442 5.24109 5.27320 5.37375 5.58667 5.72348 5.77956 5.82203 6.08513 6.20690 6.43345 6.81025 7.11320 7.12859 7.41506 8.92734 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.006133 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.945338 B = 4564.145720 C = 6692.272060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.203 4.203 3 C -0.028 4.028 4 O -0.132 6.132 5 C -0.106 4.106 6 C 0.593 3.407 7 O -0.556 6.556 8 N -0.584 5.584 9 C 0.265 3.735 10 C -0.523 4.523 11 H 0.045 0.955 12 C 0.027 3.973 13 N -0.919 5.919 14 Si 0.952 3.048 15 H -0.275 1.275 16 H -0.274 1.274 17 H -0.278 1.278 18 C 0.169 3.831 19 C 0.092 3.908 20 C -0.157 4.157 21 C -0.079 4.079 22 C -0.163 4.163 23 C 0.078 3.922 24 N -0.508 5.508 25 C -0.108 4.108 26 C -0.081 4.081 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.221 0.779 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 -11.088 5.065 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.205 4.205 3 C -0.099 4.099 4 O -0.025 6.025 5 C -0.159 4.159 6 C 0.383 3.617 7 O -0.439 6.439 8 N -0.313 5.313 9 C 0.144 3.856 10 C -0.561 4.561 11 H 0.063 0.937 12 C -0.173 4.173 13 N -0.559 5.559 14 Si 0.777 3.223 15 H -0.200 1.200 16 H -0.199 1.199 17 H -0.204 1.204 18 C 0.045 3.955 19 C -0.046 4.046 20 C -0.178 4.178 21 C -0.104 4.104 22 C -0.183 4.183 23 C -0.079 4.079 24 N -0.218 5.218 25 C -0.111 4.111 26 C -0.137 4.137 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.237 0.763 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.156 0.844 37 H 0.185 0.815 38 H 0.190 0.810 39 H 0.191 0.809 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.958 -10.501 4.776 12.556 hybrid contribution 0.017 0.386 -0.527 0.653 sum -4.941 -10.115 4.249 12.032 Atomic orbital electron populations 1.20200 0.86008 1.03703 1.02971 1.20659 0.99034 0.90763 1.10004 1.24920 0.80921 1.01379 1.02694 1.84749 1.28567 1.20827 1.68387 1.21888 0.95852 0.81824 1.16313 1.16891 0.82009 0.86096 0.76709 1.90656 1.86418 1.12656 1.54187 1.48102 1.04520 1.10611 1.68044 1.19065 0.96504 0.73856 0.96146 1.21422 1.50247 0.91868 0.92588 0.93706 1.25508 0.94552 0.97920 0.99279 1.70048 1.50548 1.07855 1.27436 0.85614 0.78003 0.78546 0.80125 1.19959 1.19898 1.20397 1.20247 0.86942 0.95786 0.92482 1.21569 0.94718 0.91736 0.96560 1.22183 1.00322 0.96520 0.98751 1.22004 0.94877 1.01118 0.92449 1.22533 0.98734 0.94713 1.02283 1.23269 0.97361 0.95668 0.91633 1.67472 1.11907 1.36275 1.06129 1.20818 0.90224 0.98653 1.01408 1.20334 1.02103 0.88527 1.02776 0.90537 0.90471 0.90160 0.76263 0.96189 0.96153 0.92573 0.89712 0.88153 0.84359 0.81462 0.80966 0.80939 0.90729 0.89295 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 10.16 71.24 0.72 -0.81 16 2 C -0.20 -6.49 6.14 -20.06 -0.12 -6.61 16 3 C -0.03 -1.02 12.00 67.10 0.81 -0.22 16 4 O -0.13 -6.15 6.35 -5.02 -0.03 -6.18 16 5 C -0.11 -4.73 6.64 24.07 0.16 -4.57 16 6 C 0.59 27.17 7.58 86.44 0.66 27.83 16 7 O -0.56 -24.40 14.09 -4.35 -0.06 -24.46 16 8 N -0.58 -27.38 2.45 -835.24 -2.05 -29.43 16 9 C 0.26 14.17 4.75 85.63 0.41 14.58 16 10 C -0.52 -29.15 7.74 25.60 0.20 -28.95 16 11 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 12 C 0.03 1.50 5.46 84.65 0.46 1.97 16 13 N -0.92 -53.12 13.29 21.44 0.28 -52.83 16 14 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 C 0.17 6.87 5.65 85.63 0.48 7.35 16 19 C 0.09 3.44 6.36 42.55 0.27 3.71 16 20 C -0.16 -4.88 9.72 22.36 0.22 -4.66 16 21 C -0.08 -1.86 10.18 22.47 0.23 -1.63 16 22 C -0.16 -3.62 10.11 22.36 0.23 -3.40 16 23 C 0.08 2.25 11.18 84.67 0.95 3.20 16 24 N -0.51 -19.33 10.27 -183.89 -1.89 -21.21 16 25 C -0.11 -3.96 6.20 -19.74 -0.12 -4.08 16 26 C -0.08 -2.41 9.65 71.24 0.69 -1.72 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.43 8.06 -2.38 -0.02 1.41 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.22 6.43 8.06 -2.91 -0.02 6.40 16 31 H 0.02 1.17 5.97 -2.39 -0.01 1.16 16 32 H 0.02 1.19 8.03 -2.39 -0.02 1.17 16 33 H 0.27 14.42 8.31 -92.71 -0.77 13.64 16 34 H 0.08 3.57 8.07 -2.39 -0.02 3.55 16 35 H 0.10 3.74 7.40 -2.39 -0.02 3.73 16 36 H 0.14 4.21 7.80 -2.91 -0.02 4.18 16 37 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 42 H 0.07 2.29 6.34 -2.39 -0.02 2.28 16 Total: -1.00 -71.10 359.35 5.54 -65.56 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 1.03 Total: 20.78 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.23 Total: 1.98 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.65 Total: -103.47 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.09 Total: -30.64 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -71.10 5.54 -65.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645767096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.939 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds