Wall clock time and date at job start Tue Mar 31 2020 11:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38143 * 119.54878 * 2 1 4 4 C 1.39822 * 118.99848 * 180.02562 * 3 2 1 5 5 C 1.48155 * 120.92157 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99649 * 336.04639 * 5 4 3 7 7 N 1.34771 * 119.99649 * 155.76796 * 5 4 3 8 8 C 1.46500 * 120.00297 * 358.13163 * 7 5 4 9 9 C 1.50695 * 109.47341 * 100.09886 * 8 7 5 10 10 H 1.07998 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00110 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99841 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99826 * 359.97438 * 11 9 8 14 14 H 1.48508 * 109.46773 * 90.00073 * 13 11 9 15 15 H 1.48495 * 109.47103 * 209.99841 * 13 11 9 16 16 H 1.48499 * 109.47234 * 330.00029 * 13 11 9 17 17 C 1.46505 * 119.99630 * 178.13114 * 7 5 4 18 18 C 1.50696 * 109.47379 * 85.20889 * 17 7 5 19 19 C 1.34517 * 125.79091 * 89.71390 * 18 17 7 20 20 C 1.41377 * 106.84163 * 179.89047 * 19 18 17 21 21 C 1.34516 * 106.84201 * 0.37147 * 20 19 18 22 22 O 1.34299 * 125.79196 * 270.02525 * 18 17 7 23 23 C 1.39816 * 118.15571 * 0.24907 * 4 3 2 24 24 C 1.38152 * 118.99800 * 359.52556 * 23 4 3 25 25 C 1.50702 * 119.54946 * 180.22989 * 24 23 4 26 26 N 1.31809 * 119.55036 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47241 * 90.00147 * 1 2 3 28 28 H 1.09004 * 109.47155 * 210.00080 * 1 2 3 29 29 H 1.08997 * 109.47493 * 330.00443 * 1 2 3 30 30 H 1.07998 * 120.50638 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46707 * 220.10115 * 8 7 5 32 32 H 1.08994 * 109.46916 * 340.09332 * 8 7 5 33 33 H 0.97000 * 119.99724 * 179.97438 * 12 11 9 34 34 H 1.09008 * 109.46928 * 205.21050 * 17 7 5 35 35 H 1.08996 * 109.47014 * 325.20457 * 17 7 5 36 36 H 1.08003 * 126.57452 * 0.02836 * 19 18 17 37 37 H 1.08001 * 126.57655 * 180.16609 * 20 19 18 38 38 H 1.08001 * 125.79097 * 179.74840 * 21 20 19 39 39 H 1.07996 * 120.49968 * 179.73364 * 23 4 3 40 40 H 1.08993 * 109.46877 * 270.25772 * 25 24 23 41 41 H 1.09000 * 109.47141 * 30.25807 * 25 24 23 42 42 H 1.09001 * 109.46983 * 150.25394 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1883 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.8567 3.4721 -0.4284 7 7 5.6197 2.4710 0.4774 8 6 6.2098 1.2519 1.0358 9 6 7.1091 0.6133 0.0090 10 1 7.2294 1.0700 -0.9622 11 6 7.7783 -0.5542 0.3094 12 7 8.5627 -1.1118 -0.5869 13 14 7.5707 -1.3438 1.9896 14 1 6.4333 -2.2980 1.9509 15 1 8.8140 -2.0702 2.3521 16 1 7.2995 -0.2911 3.0012 17 6 6.3990 3.7110 0.4392 18 6 6.0826 4.5409 1.6567 19 6 6.7220 4.4792 2.8386 20 6 6.1045 5.4256 3.6882 21 6 5.1193 6.0032 2.9774 22 8 5.1108 5.4633 1.7477 23 6 4.2343 -0.0507 -0.0064 24 6 3.4739 -1.2041 -0.0014 25 6 4.1594 -2.5462 -0.0024 26 7 2.1571 -1.1466 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6492 2.1376 0.0004 31 1 6.7917 1.5032 1.9225 32 1 5.4163 0.5557 1.3073 33 1 9.0337 -1.9329 -0.3753 34 1 7.4624 3.4717 0.4289 35 1 6.1443 4.2726 -0.4595 36 1 7.5499 3.8326 3.0895 37 1 6.3704 5.6409 4.7126 38 1 4.4487 6.7705 3.3350 39 1 5.3129 -0.1052 -0.0114 40 1 4.3243 -2.8691 -1.0303 41 1 5.1174 -2.4652 0.5112 42 1 3.5322 -3.2748 0.5113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647585473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:44 Heat of formation + Delta-G solvation = 38.638165 kcal Electronic energy + Delta-G solvation = -26537.879226 eV Core-core repulsion = 22871.832028 eV Total energy + Delta-G solvation = -3666.047197 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -42.28720 -40.43809 -38.72447 -35.73912 -33.52222 -33.04550 -32.65447 -32.46978 -30.37224 -28.83385 -28.28119 -26.40894 -25.85681 -23.41988 -22.33291 -21.57637 -21.40601 -20.37534 -18.79320 -17.47555 -16.97474 -16.74119 -16.24784 -15.77856 -15.66283 -15.07767 -14.69069 -14.44771 -14.34131 -14.19090 -13.58631 -13.15410 -13.08397 -12.93386 -12.75382 -12.57660 -12.52900 -12.42904 -12.20457 -12.02120 -11.81802 -11.59964 -11.50609 -11.11865 -10.75017 -10.53956 -10.45106 -9.91112 -9.74570 -9.67568 -9.34823 -8.94700 -8.90272 -8.35671 -8.23225 -8.07365 -6.47219 -4.51707 1.23384 1.51023 1.91199 2.77996 3.00412 3.11792 3.14456 3.16649 3.42298 3.68981 4.04458 4.18701 4.51026 4.80394 4.85357 4.96935 5.06437 5.23896 5.26087 5.38409 5.53215 5.58353 5.68572 5.70946 5.88045 5.93446 5.95411 5.97239 5.99721 6.03100 6.13381 6.18765 6.30190 6.32203 6.44158 6.48723 6.54319 6.71353 6.74061 6.99480 7.12935 7.22291 7.41110 7.81571 8.14802 8.35158 8.56966 8.64786 9.08281 10.63192 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.006667 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.353640 B = 4198.838232 C = 6311.615080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.104 3.896 3 C -0.128 4.128 4 C -0.085 4.085 5 C 0.560 3.440 6 O -0.547 6.547 7 N -0.577 5.577 8 C 0.183 3.817 9 C -0.552 4.552 10 H 0.087 0.913 11 C 0.086 3.914 12 N -0.871 5.871 13 Si 0.853 3.147 14 H -0.258 1.258 15 H -0.278 1.278 16 H -0.260 1.260 17 C 0.199 3.801 18 C -0.016 4.016 19 C -0.204 4.204 20 C -0.218 4.218 21 C -0.050 4.050 22 O -0.163 6.163 23 C -0.160 4.160 24 C 0.116 3.884 25 C -0.105 4.105 26 N -0.476 5.476 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.272 0.728 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.197 0.803 39 H 0.212 0.788 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 4.580 5.904 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.034 4.034 3 C -0.149 4.149 4 C -0.096 4.096 5 C 0.349 3.651 6 O -0.426 6.426 7 N -0.307 5.307 8 C 0.062 3.938 9 C -0.589 4.589 10 H 0.105 0.895 11 C -0.121 4.121 12 N -0.506 5.506 13 Si 0.678 3.322 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.185 1.185 17 C 0.075 3.925 18 C -0.068 4.068 19 C -0.224 4.224 20 C -0.237 4.237 21 C -0.118 4.118 22 O -0.058 6.058 23 C -0.178 4.178 24 C -0.022 4.022 25 C -0.163 4.163 26 N -0.188 5.188 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.214 0.786 39 H 0.227 0.773 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.014 4.252 5.390 10.552 hybrid contribution 0.659 0.295 1.187 1.389 sum -7.355 4.548 6.577 10.864 Atomic orbital electron populations 1.20619 0.88981 1.02972 1.02729 1.21033 0.96677 0.87931 0.97739 1.21934 0.93409 0.99424 1.00153 1.20287 0.93836 0.94053 1.01375 1.18258 0.81499 0.87603 0.77751 1.90712 1.69713 1.34147 1.47984 1.47807 1.12668 1.10883 1.59319 1.20657 0.95008 0.82815 0.95282 1.21286 1.26818 1.09287 1.01547 0.89515 1.24882 0.94020 0.96508 0.96647 1.69869 1.27304 1.19349 1.34043 0.87242 0.79101 0.80864 0.84988 1.18364 1.20303 1.18451 1.19767 0.97263 0.82965 0.92467 1.23190 0.90736 0.93750 0.99145 1.21668 1.04421 1.03103 0.93215 1.21785 0.99692 1.00935 1.01315 1.23993 1.02257 1.02083 0.83477 1.84125 1.46292 1.43366 1.32028 1.24512 1.07695 0.90924 0.94669 1.21283 0.88712 0.96184 0.95988 1.20805 1.00225 0.91922 1.03301 1.67104 1.10254 1.29474 1.11955 0.90790 0.90782 0.91037 0.84598 0.94677 0.92967 0.91772 0.86090 0.88999 0.83399 0.83835 0.78631 0.77281 0.90333 0.89982 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.17 36.01 0.37 -0.79 16 2 C 0.10 1.74 6.78 -82.64 -0.56 1.18 16 3 C -0.13 -2.30 9.32 -39.02 -0.36 -2.67 16 4 C -0.08 -1.72 5.59 -104.64 -0.59 -2.30 16 5 C 0.56 11.94 7.51 -12.19 -0.09 11.85 16 6 O -0.55 -12.42 16.36 5.36 0.09 -12.33 16 7 N -0.58 -11.73 2.47 -177.44 -0.44 -12.17 16 8 C 0.18 3.85 3.68 -5.20 -0.02 3.83 16 9 C -0.55 -13.11 7.77 -34.44 -0.27 -13.38 16 10 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 11 C 0.09 2.09 5.30 -17.82 -0.09 2.00 16 12 N -0.87 -22.80 13.96 55.43 0.77 -22.03 16 13 Si 0.85 17.85 26.95 -169.99 -4.58 13.27 16 14 H -0.26 -5.10 5.64 56.52 0.32 -4.78 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 16 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16 17 C 0.20 3.57 5.86 -5.19 -0.03 3.54 16 18 C -0.02 -0.28 6.87 -35.63 -0.24 -0.53 16 19 C -0.20 -3.23 10.81 -39.70 -0.43 -3.66 16 20 C -0.22 -3.02 10.91 -39.70 -0.43 -3.45 16 21 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 22 O -0.16 -2.86 10.65 5.73 0.06 -2.80 16 23 C -0.16 -3.26 7.24 -39.02 -0.28 -3.54 16 24 C 0.12 2.21 6.78 -82.63 -0.56 1.65 16 25 C -0.11 -1.77 10.16 36.01 0.37 -1.40 16 26 N -0.48 -8.70 10.16 -5.79 -0.06 -8.76 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.14 2.24 7.92 -52.49 -0.42 1.83 16 31 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 32 H 0.05 1.12 3.82 -51.93 -0.20 0.92 16 33 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.12 2.01 8.04 -51.92 -0.42 1.59 16 35 H 0.09 1.65 7.60 -51.93 -0.39 1.25 16 36 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16 37 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.20 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.21 4.60 2.69 -52.49 -0.14 4.46 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.45 6.07 -51.93 -0.32 1.14 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -29.01 351.16 -7.04 -36.05 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.31 Total: 11.48 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.87 Total: -8.00 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.28 Total: -42.96 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.15 Total: -15.13 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -4.58 Total: 13.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.01 -7.04 -36.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647585473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.688 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds