Wall clock time and date at job start Tue Mar 31 2020 11:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38143 * 119.54878 * 2 1 4 4 C 1.39822 * 118.99848 * 180.02562 * 3 2 1 5 5 C 1.48155 * 120.92157 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99649 * 336.04639 * 5 4 3 7 7 N 1.34771 * 119.99649 * 155.76796 * 5 4 3 8 8 C 1.46500 * 120.00297 * 358.13163 * 7 5 4 9 9 C 1.50695 * 109.47341 * 100.09886 * 8 7 5 10 10 H 1.07998 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00110 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99841 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99826 * 359.97438 * 11 9 8 14 14 H 1.48508 * 109.46773 * 90.00073 * 13 11 9 15 15 H 1.48495 * 109.47103 * 209.99841 * 13 11 9 16 16 H 1.48499 * 109.47234 * 330.00029 * 13 11 9 17 17 C 1.46505 * 119.99630 * 178.13114 * 7 5 4 18 18 C 1.50696 * 109.47379 * 85.20889 * 17 7 5 19 19 C 1.34517 * 125.79091 * 89.71390 * 18 17 7 20 20 C 1.41377 * 106.84163 * 179.89047 * 19 18 17 21 21 C 1.34516 * 106.84201 * 0.37147 * 20 19 18 22 22 O 1.34299 * 125.79196 * 270.02525 * 18 17 7 23 23 C 1.39816 * 118.15571 * 0.24907 * 4 3 2 24 24 C 1.38152 * 118.99800 * 359.52556 * 23 4 3 25 25 C 1.50702 * 119.54946 * 180.22989 * 24 23 4 26 26 N 1.31809 * 119.55036 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47241 * 90.00147 * 1 2 3 28 28 H 1.09004 * 109.47155 * 210.00080 * 1 2 3 29 29 H 1.08997 * 109.47493 * 330.00443 * 1 2 3 30 30 H 1.07998 * 120.50638 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46707 * 220.10115 * 8 7 5 32 32 H 1.08994 * 109.46916 * 340.09332 * 8 7 5 33 33 H 0.97000 * 119.99724 * 179.97438 * 12 11 9 34 34 H 1.09008 * 109.46928 * 205.21050 * 17 7 5 35 35 H 1.08996 * 109.47014 * 325.20457 * 17 7 5 36 36 H 1.08003 * 126.57452 * 0.02836 * 19 18 17 37 37 H 1.08001 * 126.57655 * 180.16609 * 20 19 18 38 38 H 1.08001 * 125.79097 * 179.74840 * 21 20 19 39 39 H 1.07996 * 120.49968 * 179.73364 * 23 4 3 40 40 H 1.08993 * 109.46877 * 270.25772 * 25 24 23 41 41 H 1.09000 * 109.47141 * 30.25807 * 25 24 23 42 42 H 1.09001 * 109.46983 * 150.25394 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1883 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.8567 3.4721 -0.4284 7 7 5.6197 2.4710 0.4774 8 6 6.2098 1.2519 1.0358 9 6 7.1091 0.6133 0.0090 10 1 7.2294 1.0700 -0.9622 11 6 7.7783 -0.5542 0.3094 12 7 8.5627 -1.1118 -0.5869 13 14 7.5707 -1.3438 1.9896 14 1 6.4333 -2.2980 1.9509 15 1 8.8140 -2.0702 2.3521 16 1 7.2995 -0.2911 3.0012 17 6 6.3990 3.7110 0.4392 18 6 6.0826 4.5409 1.6567 19 6 6.7220 4.4792 2.8386 20 6 6.1045 5.4256 3.6882 21 6 5.1193 6.0032 2.9774 22 8 5.1108 5.4633 1.7477 23 6 4.2343 -0.0507 -0.0064 24 6 3.4739 -1.2041 -0.0014 25 6 4.1594 -2.5462 -0.0024 26 7 2.1571 -1.1466 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6492 2.1376 0.0004 31 1 6.7917 1.5032 1.9225 32 1 5.4163 0.5557 1.3073 33 1 9.0337 -1.9329 -0.3753 34 1 7.4624 3.4717 0.4289 35 1 6.1443 4.2726 -0.4595 36 1 7.5499 3.8326 3.0895 37 1 6.3704 5.6409 4.7126 38 1 4.4487 6.7705 3.3350 39 1 5.3129 -0.1052 -0.0114 40 1 4.3243 -2.8691 -1.0303 41 1 5.1174 -2.4652 0.5112 42 1 3.5322 -3.2748 0.5113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647585473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:41 Heat of formation + Delta-G solvation = 22.161099 kcal Electronic energy + Delta-G solvation = -26538.593725 eV Core-core repulsion = 22871.832028 eV Total energy + Delta-G solvation = -3666.761697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -43.49798 -41.94008 -40.26461 -37.41472 -35.01433 -34.55558 -34.14890 -33.79937 -31.76687 -30.17696 -29.83223 -27.75691 -27.23463 -25.07254 -23.93116 -22.91530 -22.61197 -21.62396 -20.32176 -19.23507 -18.41539 -18.16516 -17.82371 -17.17597 -17.05354 -16.57959 -16.23070 -15.98350 -15.71035 -15.60388 -15.01129 -14.69329 -14.57884 -14.41709 -14.09887 -13.88525 -13.72166 -13.62525 -13.46974 -13.26671 -13.23016 -12.99357 -12.83661 -12.61511 -12.27944 -12.18749 -12.05356 -11.75639 -11.39738 -10.91891 -10.85949 -10.71892 -10.38410 -9.83019 -9.66488 -9.44973 -8.36703 -6.45651 -0.28215 0.08383 0.68249 1.35745 1.40928 1.47648 1.61313 1.69608 2.08495 2.24636 2.28212 2.72566 2.94625 3.22306 3.31995 3.71580 3.79154 4.02441 4.05401 4.13635 4.14385 4.29929 4.45754 4.48703 4.50963 4.51847 4.71200 4.71437 4.75873 4.77782 4.81785 4.90132 4.99633 5.04667 5.13947 5.16107 5.18580 5.24659 5.31981 5.43932 5.60750 5.74277 6.02397 6.22556 6.39455 6.61680 6.93205 6.96213 7.18671 8.77376 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.006667 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.353640 B = 4198.838232 C = 6311.615080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.112 3.888 3 C -0.132 4.132 4 C -0.101 4.101 5 C 0.554 3.446 6 O -0.568 6.568 7 N -0.579 5.579 8 C 0.195 3.805 9 C -0.545 4.545 10 H 0.045 0.955 11 C 0.047 3.953 12 N -0.917 5.917 13 Si 0.903 3.097 14 H -0.238 1.238 15 H -0.280 1.280 16 H -0.248 1.248 17 C 0.197 3.803 18 C -0.047 4.047 19 C -0.202 4.202 20 C -0.223 4.223 21 C -0.043 4.043 22 O -0.190 6.190 23 C -0.182 4.182 24 C 0.111 3.889 25 C -0.103 4.103 26 N -0.481 5.481 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.274 0.726 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.238 0.762 39 H 0.194 0.806 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 4.584 8.253 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.153 4.153 4 C -0.112 4.112 5 C 0.343 3.657 6 O -0.449 6.449 7 N -0.307 5.307 8 C 0.074 3.926 9 C -0.583 4.583 10 H 0.063 0.937 11 C -0.156 4.156 12 N -0.554 5.554 13 Si 0.725 3.275 14 H -0.162 1.162 15 H -0.205 1.205 16 H -0.172 1.172 17 C 0.075 3.925 18 C -0.098 4.098 19 C -0.222 4.222 20 C -0.241 4.241 21 C -0.111 4.111 22 O -0.086 6.086 23 C -0.201 4.201 24 C -0.026 4.026 25 C -0.160 4.160 26 N -0.193 5.193 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.167 0.833 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.193 0.807 38 H 0.254 0.746 39 H 0.210 0.790 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.094 4.262 7.746 13.419 hybrid contribution 1.244 0.401 0.405 1.368 sum -8.850 4.663 8.151 12.904 Atomic orbital electron populations 1.20772 0.85315 1.04666 1.04280 1.21799 0.98898 0.86917 0.95038 1.22172 0.92475 1.00708 0.99908 1.20394 0.95005 0.93404 1.02406 1.18551 0.81791 0.87906 0.77445 1.90678 1.70217 1.34957 1.49089 1.47881 1.12632 1.11373 1.58856 1.20463 0.94589 0.83107 0.94466 1.21219 1.27247 1.09341 1.00478 0.93688 1.25517 0.93392 0.96731 0.99979 1.69989 1.28900 1.20180 1.36310 0.86422 0.79590 0.80650 0.80791 1.16199 1.20507 1.17190 1.19772 0.97235 0.82394 0.93118 1.22932 0.92345 0.95208 0.99350 1.21941 1.04129 1.03184 0.92995 1.22155 0.99312 1.00137 1.02530 1.24905 1.02387 1.01825 0.81956 1.84098 1.46629 1.43822 1.34036 1.24280 1.06946 0.91776 0.97068 1.21547 0.89232 0.96445 0.95398 1.20827 0.99858 0.91450 1.03901 1.67254 1.09664 1.30068 1.12307 0.89111 0.89698 0.88779 0.83270 0.93958 0.92401 0.91616 0.85610 0.89900 0.82700 0.80730 0.74567 0.79020 0.89671 0.91088 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 10.17 71.24 0.72 -1.20 16 2 C 0.11 3.47 6.78 42.54 0.29 3.76 16 3 C -0.13 -4.58 9.32 22.63 0.21 -4.37 16 4 C -0.10 -4.13 5.59 -19.88 -0.11 -4.24 16 5 C 0.55 24.18 7.51 86.88 0.65 24.84 16 6 O -0.57 -26.44 16.36 -3.75 -0.06 -26.50 16 7 N -0.58 -24.24 2.47 -833.59 -2.06 -26.30 16 8 C 0.19 8.33 3.68 85.63 0.32 8.65 16 9 C -0.55 -26.94 7.77 25.60 0.20 -26.74 16 10 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 11 C 0.05 2.32 5.30 84.66 0.45 2.77 16 12 N -0.92 -49.62 13.96 21.45 0.30 -49.32 16 13 Si 0.90 36.37 26.95 68.60 1.85 38.22 16 14 H -0.24 -8.77 5.64 99.48 0.56 -8.21 16 15 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.25 -9.45 6.54 99.48 0.65 -8.80 16 17 C 0.20 7.40 5.86 85.63 0.50 7.90 16 18 C -0.05 -1.65 6.87 24.83 0.17 -1.48 16 19 C -0.20 -6.18 10.81 22.19 0.24 -5.94 16 20 C -0.22 -5.57 10.91 22.19 0.24 -5.32 16 21 C -0.04 -1.09 12.09 66.97 0.81 -0.28 16 22 O -0.19 -6.55 10.65 -2.43 -0.03 -6.58 16 23 C -0.18 -7.48 7.24 22.63 0.16 -7.32 16 24 C 0.11 4.12 6.78 42.54 0.29 4.41 16 25 C -0.10 -3.35 10.16 71.24 0.72 -2.62 16 26 N -0.48 -16.64 10.16 -172.23 -1.75 -18.39 16 27 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.15 4.70 7.92 -2.91 -0.02 4.67 16 31 H 0.04 1.75 7.20 -2.39 -0.02 1.73 16 32 H 0.06 2.48 3.82 -2.39 -0.01 2.47 16 33 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.13 4.43 8.04 -2.38 -0.02 4.41 16 35 H 0.08 3.18 7.60 -2.39 -0.02 3.16 16 36 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.24 3.61 8.06 -2.91 -0.02 3.58 16 39 H 0.19 8.64 2.69 -2.91 -0.01 8.63 16 40 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 41 H 0.07 2.44 6.07 -2.39 -0.01 2.43 16 42 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -64.58 351.16 4.97 -59.61 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.85 Total: 36.45 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.87 Total: -7.19 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -3.51 Total: -94.01 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.09 Total: -33.08 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 1.85 Total: 38.22 kcal Total: -64.58 4.97 -59.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647585473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.774 kcal (2) G-P(sol) polarization free energy of solvation -64.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds