Wall clock time and date at job start Tue Mar 31 2020 10:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46990 * 2 1 4 4 C 1.36093 * 116.99739 * 180.02562 * 3 2 1 5 5 C 1.38475 * 120.01083 * 0.02562 * 4 3 2 6 6 C 1.38254 * 120.09556 * 179.72874 * 5 4 3 7 7 C 1.38878 * 120.10703 * 0.50673 * 6 5 4 8 8 N 1.39923 * 119.99144 * 179.77162 * 7 6 5 9 9 C 1.38791 * 120.01826 * 359.49380 * 7 6 5 10 10 C 1.38725 * 119.90184 * 0.25342 * 9 7 6 11 11 N 1.39925 * 120.04960 * 180.02562 * 10 9 7 12 12 C 1.39757 * 120.00078 * 352.38792 * 11 10 9 13 13 C 1.38983 * 120.01120 * 317.84629 * 12 11 10 14 14 C 1.37992 * 119.99189 * 179.72016 * 13 12 11 15 15 C 1.38918 * 120.00577 * 0.54810 * 14 13 12 16 16 O 1.35784 * 119.98973 * 179.70128 * 15 14 13 17 17 C 1.34814 * 116.99875 * 185.61370 * 16 15 14 18 18 H 1.08002 * 119.99989 * 354.88284 * 17 16 15 19 19 C 1.38614 * 119.99933 * 174.88952 * 17 16 15 20 20 N 1.31584 * 119.99888 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 119.99857 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47457 * 90.00249 * 21 19 17 23 23 H 1.48503 * 109.47111 * 210.00078 * 21 19 17 24 24 H 1.48497 * 109.47252 * 329.99890 * 21 19 17 25 25 C 1.38911 * 120.01905 * 359.72869 * 15 14 13 26 26 C 1.37994 * 120.00725 * 359.97438 * 25 15 14 27 27 H 1.09003 * 109.46963 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46806 * 300.00488 * 1 2 3 29 29 H 1.08994 * 109.46867 * 60.00415 * 1 2 3 30 30 H 1.09001 * 109.47279 * 239.99639 * 2 1 3 31 31 H 1.09007 * 109.46807 * 119.99874 * 2 1 3 32 32 H 1.07999 * 119.95503 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.94441 * 180.25570 * 6 5 4 34 34 H 0.97002 * 119.99769 * 179.72902 * 8 7 6 35 35 H 0.96997 * 119.99742 * 359.44746 * 8 7 6 36 36 H 1.08002 * 120.04804 * 180.23592 * 9 7 6 37 37 H 0.96996 * 119.99832 * 172.39795 * 11 10 9 38 38 H 1.07998 * 120.00273 * 359.97438 * 13 12 11 39 39 H 1.07997 * 119.99845 * 180.27509 * 14 13 12 40 40 H 0.97005 * 119.99979 * 179.97438 * 20 19 17 41 41 H 1.08002 * 119.99884 * 179.97438 * 25 15 14 42 42 H 1.07995 * 120.00337 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3556 1.5256 -0.0005 5 6 4.1993 0.4275 -0.0016 6 6 5.5702 0.6066 -0.0078 7 6 6.1053 1.8881 -0.0024 8 7 7.4931 2.0666 -0.0039 9 6 5.2640 2.9920 -0.0013 10 6 3.8883 2.8130 -0.0004 11 7 3.0372 3.9236 0.0001 12 6 3.5645 5.2080 0.1600 13 6 4.5634 5.4374 1.0988 14 6 5.0878 6.7046 1.2523 15 6 4.6094 7.7531 0.4766 16 8 5.1214 9.0010 0.6322 17 6 4.5354 9.9944 -0.0658 18 1 3.7525 9.7675 -0.7744 19 6 4.9377 11.3070 0.1258 20 7 4.3660 12.2765 -0.5558 21 14 6.2913 11.6994 1.3518 22 1 7.6078 11.6575 0.6659 23 1 6.0702 13.0551 1.9162 24 1 6.2721 10.6977 2.4479 25 6 3.6070 7.5253 -0.4577 26 6 3.0864 6.2572 -0.6161 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8901 32 1 3.7859 -0.5702 -0.0016 33 1 6.2259 -0.2515 -0.0128 34 1 7.8670 2.9616 -0.0041 35 1 8.0812 1.2952 -0.0006 36 1 5.6797 3.9888 -0.0010 37 1 2.0813 3.8021 -0.1103 38 1 4.9320 4.6233 1.7051 39 1 5.8671 6.8821 1.9786 40 1 4.6473 13.1951 -0.4215 41 1 3.2350 8.3408 -1.0602 42 1 2.3068 6.0803 -1.3422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212609708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:44 Heat of formation + Delta-G solvation = -3.360043 kcal Electronic energy + Delta-G solvation = -24964.556686 eV Core-core repulsion = 21296.688310 eV Total energy + Delta-G solvation = -3667.868376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35482 -39.20774 -37.96334 -37.14950 -34.93468 -33.27441 -32.32409 -31.63570 -30.61201 -29.49847 -28.23309 -26.89417 -25.08139 -24.05405 -22.44334 -22.03299 -21.27497 -20.64148 -18.32968 -17.76292 -17.55336 -17.33251 -16.82171 -16.12945 -16.04659 -15.18882 -14.95711 -14.61960 -14.22226 -14.05510 -13.86794 -13.68717 -13.46872 -13.19613 -12.83508 -12.74900 -12.58498 -12.42679 -12.34348 -12.25989 -11.99757 -11.66360 -11.49868 -11.19767 -10.93644 -10.86542 -10.73962 -10.34110 -10.17524 -9.61256 -9.39942 -8.87808 -8.33163 -8.04827 -7.24941 -6.56961 -6.41568 -4.07351 1.50098 1.76491 2.03686 2.29696 3.22502 3.23764 3.25176 3.39889 3.63180 3.99437 4.01910 4.23461 4.45316 4.76084 4.77688 4.85616 4.96173 5.06567 5.10468 5.17340 5.34822 5.51277 5.52188 5.60075 5.62217 5.67084 5.80602 5.82944 6.04043 6.06258 6.14032 6.36144 6.39991 6.50043 6.64844 6.69479 6.79539 6.97287 7.22129 7.33970 7.42604 7.57320 7.74686 7.81649 7.90832 7.99500 8.09741 8.93645 9.55966 10.66069 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.002921 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.528673 B = 9582.126171 C =10717.824923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.324 6.324 4 C 0.001 3.999 5 C -0.119 4.119 6 C -0.222 4.222 7 C 0.227 3.773 8 N -0.880 5.880 9 C -0.239 4.239 10 C 0.239 3.761 11 N -0.670 5.670 12 C 0.071 3.929 13 C -0.102 4.102 14 C -0.172 4.172 15 C 0.146 3.854 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.199 4.199 26 C -0.097 4.097 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.398 0.602 35 H 0.394 0.606 36 H 0.141 0.859 37 H 0.408 0.592 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.279 0.721 41 H 0.137 0.863 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -24.300 1.336 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.239 6.239 4 C -0.048 4.048 5 C -0.139 4.139 6 C -0.247 4.247 7 C 0.123 3.877 8 N -0.420 5.420 9 C -0.266 4.266 10 C 0.135 3.865 11 N -0.293 5.293 12 C -0.023 4.023 13 C -0.122 4.122 14 C -0.192 4.192 15 C 0.094 3.906 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.219 4.219 26 C -0.118 4.118 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.226 0.774 35 H 0.222 0.778 36 H 0.158 0.842 37 H 0.244 0.756 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.808 -23.702 1.443 23.759 hybrid contribution 0.529 0.062 0.250 0.588 sum -0.279 -23.640 1.693 23.702 Atomic orbital electron populations 1.21764 0.93252 1.02463 1.03436 1.22590 0.95337 0.82727 1.00734 1.85950 1.18912 1.28233 1.90821 1.18106 0.82417 0.92166 1.12077 1.20625 0.93330 0.96893 1.03061 1.20066 0.94433 0.94884 1.15299 1.17406 0.83976 0.92860 0.93506 1.42446 1.03210 1.10507 1.85864 1.20285 0.90542 0.98929 1.16872 1.16865 0.89633 0.84164 0.95839 1.41798 1.08231 1.01588 1.77648 1.17264 1.01336 0.84118 0.99610 1.20643 0.98448 0.96067 0.97045 1.20068 1.04872 0.91057 1.03158 1.19099 0.92100 0.85745 0.93683 1.83574 1.52977 1.13158 1.62620 1.20751 1.20370 0.84598 1.20672 0.87658 1.24459 0.98114 0.93916 0.97562 1.69661 1.41394 1.00362 1.40453 0.86176 0.81250 0.77828 0.81625 1.19922 1.20860 1.18327 1.21140 1.00872 0.97245 1.02631 1.20667 1.00863 0.92318 0.97929 0.90771 0.91629 0.91641 0.92684 0.92668 0.85996 0.86738 0.77399 0.77802 0.84190 0.75598 0.86114 0.86194 0.91073 0.84582 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.54 5.46 37.16 0.20 0.75 16 3 O -0.32 -4.03 9.39 -20.04 -0.19 -4.22 16 4 C 0.00 0.01 6.70 -39.09 -0.26 -0.25 16 5 C -0.12 -1.38 9.03 -39.49 -0.36 -1.74 16 6 C -0.22 -2.54 9.89 -39.34 -0.39 -2.93 16 7 C 0.23 2.80 6.75 -83.72 -0.57 2.23 16 8 N -0.88 -8.29 9.10 32.43 0.30 -7.99 16 9 C -0.24 -3.42 7.90 -39.20 -0.31 -3.73 16 10 C 0.24 3.53 6.44 -83.58 -0.54 2.99 16 11 N -0.67 -10.17 5.47 -8.27 -0.05 -10.21 16 12 C 0.07 1.21 5.86 -83.69 -0.49 0.72 16 13 C -0.10 -1.75 7.37 -39.40 -0.29 -2.04 16 14 C -0.17 -3.32 9.98 -39.42 -0.39 -3.71 16 15 C 0.15 3.29 6.65 -39.08 -0.26 3.03 16 16 O -0.22 -5.65 8.58 -0.01 0.00 -5.65 16 17 C -0.39 -10.81 9.94 30.87 0.31 -10.50 16 18 H 0.11 2.99 5.43 -52.49 -0.28 2.70 16 19 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 20 N -0.88 -25.33 13.96 55.48 0.77 -24.55 16 21 Si 0.91 21.51 28.61 -169.99 -4.86 16.65 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.20 -4.20 9.16 -39.42 -0.36 -4.57 16 26 C -0.10 -1.76 9.96 -39.39 -0.39 -2.15 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 32 H 0.12 1.12 6.28 -52.49 -0.33 0.79 16 33 H 0.11 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.40 3.50 8.84 -40.82 -0.36 3.14 16 35 H 0.39 2.79 8.84 -40.82 -0.36 2.43 16 36 H 0.14 2.12 5.38 -52.49 -0.28 1.84 16 37 H 0.41 5.75 8.21 -40.82 -0.33 5.41 16 38 H 0.12 1.89 6.69 -52.49 -0.35 1.54 16 39 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.14 3.02 5.63 -52.49 -0.30 2.72 16 42 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -30.32 350.87 -7.62 -37.94 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.07 Total: 13.70 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.81 Total: -20.95 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 1.02 Total: -42.76 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.19 Total: -9.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.32 -7.62 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.579 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds