Wall clock time and date at job start Tue Mar 31 2020 11:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99348 * 2 1 4 4 H 1.48502 * 109.47229 * 85.01692 * 3 2 1 5 5 H 1.48497 * 109.47433 * 325.01002 * 3 2 1 6 6 H 1.48508 * 109.46856 * 205.01146 * 3 2 1 7 7 C 1.38806 * 120.00621 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00084 * 195.84642 * 7 2 1 9 9 N 1.36938 * 119.99801 * 15.84949 * 7 2 1 10 10 C 1.43465 * 118.93977 * 206.24790 * 9 7 2 11 11 C 1.53791 * 107.96079 * 273.60659 * 10 9 7 12 12 C 1.47136 * 111.84503 * 281.66834 * 11 10 9 13 13 N 1.48211 * 110.34097 * 58.29463 * 12 11 10 14 14 C 1.34786 * 119.96696 * 102.47232 * 13 12 11 15 15 O 1.21630 * 119.99788 * 352.13576 * 14 13 12 16 16 C 1.47304 * 119.99670 * 172.13628 * 14 13 12 17 17 C 1.46615 * 120.61894 * 22.86848 * 16 14 13 18 18 C 1.34224 * 119.80981 * 179.97438 * 17 16 14 19 19 N 1.37389 * 120.96013 * 0.02562 * 18 17 16 20 20 C 1.34891 * 132.31596 * 179.97438 * 19 18 17 21 21 N 1.30987 * 109.51290 * 179.97438 * 20 19 18 22 22 C 1.33130 * 109.92935 * 0.02562 * 21 20 19 23 23 C 1.38187 * 120.82410 * 359.97438 * 19 18 17 24 24 C 1.38581 * 120.61205 * 202.59338 * 16 14 13 25 25 C 1.43617 * 120.06411 * 282.49215 * 13 12 11 26 26 C 1.48859 * 118.93911 * 25.97977 * 9 7 2 27 27 H 0.97004 * 120.00833 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.76355 * 33.22837 * 10 9 7 29 29 H 1.09002 * 109.75891 * 153.94175 * 10 9 7 30 30 H 1.09003 * 109.00395 * 42.28030 * 11 10 9 31 31 H 1.09004 * 109.00691 * 161.05365 * 11 10 9 32 32 H 1.09000 * 109.32582 * 178.56377 * 12 11 10 33 33 H 1.09002 * 109.32525 * 298.20817 * 12 11 10 34 34 H 1.07992 * 120.09087 * 0.02562 * 17 16 14 35 35 H 1.08006 * 119.52063 * 179.97438 * 18 17 16 36 36 H 1.08002 * 125.24229 * 359.97438 * 20 19 18 37 37 H 1.07997 * 126.31372 * 180.02562 * 22 21 20 38 38 H 1.07996 * 120.49623 * 0.02721 * 24 16 14 39 39 H 1.08998 * 108.87397 * 211.44938 * 25 13 12 40 40 H 1.08997 * 108.87190 * 329.98435 * 25 13 12 41 41 H 1.09002 * 109.48008 * 260.62814 * 26 9 7 42 42 H 1.09000 * 109.48372 * 20.65762 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3921 2.1074 1.3948 5 1 1.5041 2.6200 -0.8028 6 1 3.5964 1.4123 -0.5920 7 6 2.0103 -1.2020 0.0005 8 1 3.0595 -1.2196 0.2559 9 7 1.3647 -2.3656 -0.3228 10 6 1.8628 -3.6046 0.2014 11 6 2.9531 -4.1194 -0.7533 12 6 2.3780 -4.7492 -1.9523 13 7 1.5134 -3.7867 -2.6754 14 6 1.9674 -3.1792 -3.7896 15 8 3.1302 -3.3085 -4.1219 16 6 1.0552 -2.3586 -4.6047 17 6 -0.1555 -1.7785 -4.0154 18 6 -0.9751 -1.0330 -4.7730 19 7 -0.6979 -0.8031 -6.0989 20 6 -1.3459 -0.1055 -7.0544 21 7 -0.6789 -0.1807 -8.1793 22 6 0.4156 -0.9194 -8.0093 23 6 0.4339 -1.3337 -6.6880 24 6 1.3284 -2.1160 -5.9415 25 6 0.1925 -3.5005 -2.1897 26 6 0.1652 -2.3034 -1.2021 27 1 -0.4851 0.8400 -0.0004 28 1 2.2873 -3.4416 1.1920 29 1 1.0525 -4.3311 0.2628 30 1 3.5816 -3.2828 -1.0585 31 1 3.5681 -4.8506 -0.2286 32 1 3.1836 -5.0752 -2.6102 33 1 1.7826 -5.6128 -1.6559 34 1 -0.3867 -1.9500 -2.9745 35 1 -1.8659 -0.6082 -4.3342 36 1 -2.2720 0.4321 -6.9137 37 1 1.1535 -1.1520 -8.7628 38 1 2.2144 -2.5263 -6.4030 39 1 -0.4535 -3.2732 -3.0377 40 1 -0.1942 -4.3824 -1.6790 41 1 -0.7362 -2.3524 -0.5912 42 1 0.1738 -1.3690 -1.7632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981556708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:26 Heat of formation + Delta-G solvation = 134.900994 kcal Electronic energy + Delta-G solvation = -27174.619413 eV Core-core repulsion = 23545.039236 eV Total energy + Delta-G solvation = -3629.580177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.67119 -40.15239 -37.19561 -36.85016 -34.40612 -33.56110 -32.84764 -31.23503 -30.32220 -28.65005 -27.59248 -25.76865 -24.35610 -23.82779 -22.86604 -21.99689 -21.53980 -19.88919 -18.95382 -17.96964 -17.81322 -16.50473 -16.30890 -15.85329 -15.60756 -15.33648 -14.74353 -14.65408 -14.46581 -14.21505 -13.75163 -13.56662 -13.38475 -13.15274 -12.79282 -12.47655 -12.32529 -11.87881 -11.80934 -11.56451 -11.18478 -10.93183 -10.74730 -10.63769 -10.54127 -10.37899 -10.32958 -10.18817 -9.98713 -9.81655 -9.55294 -9.09263 -8.58257 -8.19846 -7.48257 -6.81299 -5.92628 -3.33562 0.63721 1.21797 2.65795 2.89241 3.07918 3.30218 3.34697 3.38546 3.43623 3.68625 4.41177 4.49472 4.56413 4.65481 4.75505 5.00324 5.00466 5.15332 5.23849 5.39711 5.43982 5.53619 5.63313 5.72322 5.79844 5.84850 5.91165 5.91839 6.04580 6.11202 6.21906 6.36336 6.44222 6.49009 6.55784 6.74557 6.75344 6.94146 7.12623 7.18720 7.22912 7.71649 7.81340 7.84048 8.32097 8.49944 9.08278 9.75395 10.20411 11.15961 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.005678 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.058030 B = 4929.895533 C = 6187.052207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.006 3.994 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.586 5.586 10 C 0.162 3.838 11 C -0.171 4.171 12 C 0.132 3.868 13 N -0.575 5.575 14 C 0.569 3.431 15 O -0.547 6.547 16 C -0.132 4.132 17 C -0.143 4.143 18 C 0.030 3.970 19 N -0.360 5.360 20 C 0.142 3.858 21 N -0.464 5.464 22 C -0.006 4.006 23 C -0.012 4.012 24 C -0.009 4.009 25 C 0.043 3.957 26 C 0.147 3.853 27 H 0.254 0.746 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.211 0.789 35 H 0.170 0.830 36 H 0.210 0.790 37 H 0.181 0.819 38 H 0.155 0.845 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 -7.147 -8.045 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.192 4.192 3 Si 0.726 3.274 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.034 3.966 11 C -0.212 4.212 12 C 0.011 3.989 13 N -0.305 5.305 14 C 0.358 3.642 15 O -0.427 6.427 16 C -0.138 4.138 17 C -0.162 4.162 18 C -0.088 4.088 19 N -0.031 5.031 20 C -0.133 4.133 21 N -0.177 5.177 22 C -0.162 4.162 23 C -0.121 4.121 24 C -0.030 4.030 25 C -0.082 4.082 26 C 0.022 3.978 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.187 0.813 36 H 0.226 0.774 37 H 0.199 0.801 38 H 0.172 0.828 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.051 -6.656 -8.864 11.802 hybrid contribution 0.587 0.779 0.930 1.348 sum -3.463 -5.877 -7.934 10.464 Atomic orbital electron populations 1.69982 1.05080 1.25523 1.54932 1.24936 0.95315 0.98215 1.00741 0.86367 0.79543 0.83842 0.77681 1.21339 1.21521 1.20411 1.19181 0.92559 0.84902 1.41417 0.91684 1.43542 1.31582 1.02261 1.53386 1.20315 0.93632 0.88139 0.94530 1.21875 1.01109 1.00915 0.97341 1.20596 0.94123 0.90126 0.94098 1.47171 1.16024 1.42761 1.24553 1.17771 0.86714 0.79019 0.80687 1.90747 1.17118 1.62576 1.72240 1.21048 0.96541 1.02071 0.94151 1.24076 0.92552 0.95609 1.03948 1.21687 1.03198 1.02693 0.81180 1.43005 1.17847 1.33225 1.09001 1.24866 1.02093 1.03406 0.82919 1.69933 1.06128 1.17559 1.24122 1.22665 0.98595 1.01849 0.93132 1.19584 0.91658 1.05615 0.95272 1.20847 0.96791 0.93309 0.92079 1.23165 0.83858 1.01502 0.99675 1.22255 0.90506 0.94549 0.90518 0.93623 0.93375 0.94736 0.91103 0.92465 0.90431 0.91863 0.77361 0.81254 0.77364 0.80150 0.82753 0.88898 0.91532 0.93235 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.02 11.05 55.49 0.61 -23.41 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.51 9.26 -15.06 -0.14 -6.65 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -13.21 2.53 -171.78 -0.43 -13.64 16 10 C 0.16 3.08 5.63 -5.24 -0.03 3.05 16 11 C -0.17 -2.94 5.64 -29.14 -0.16 -3.11 16 12 C 0.13 2.07 5.65 -5.92 -0.03 2.04 16 13 N -0.58 -9.86 2.46 -177.75 -0.44 -10.30 16 14 C 0.57 10.67 7.53 -12.57 -0.09 10.57 16 15 O -0.55 -11.63 16.10 5.25 0.08 -11.55 16 16 C -0.13 -2.21 5.84 -102.71 -0.60 -2.81 16 17 C -0.14 -2.18 7.21 -37.62 -0.27 -2.45 16 18 C 0.03 0.40 10.92 -16.48 -0.18 0.22 16 19 N -0.36 -5.03 2.94 -62.50 -0.18 -5.22 16 20 C 0.14 1.82 12.70 -90.11 -1.14 0.68 16 21 N -0.46 -6.72 11.18 -13.90 -0.16 -6.87 16 22 C -0.01 -0.08 12.04 -16.90 -0.20 -0.28 16 23 C -0.01 -0.18 6.77 -84.12 -0.57 -0.75 16 24 C -0.01 -0.14 9.70 -38.67 -0.37 -0.52 16 25 C 0.04 0.68 4.70 -4.40 -0.02 0.66 16 26 C 0.15 2.96 4.38 -1.56 -0.01 2.95 16 27 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 28 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 29 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 30 H 0.07 1.48 7.91 -51.93 -0.41 1.07 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.24 7.23 -51.93 -0.38 0.87 16 33 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.21 3.29 1.90 -52.49 -0.10 3.19 16 35 H 0.17 1.71 8.06 -52.48 -0.42 1.28 16 36 H 0.21 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.15 2.14 7.85 -52.49 -0.41 1.73 16 39 H 0.09 1.29 4.19 -52.01 -0.22 1.07 16 40 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 41 H 0.05 1.05 7.99 -51.93 -0.41 0.63 16 42 H 0.09 1.94 4.54 -51.93 -0.24 1.70 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -31.74 331.50 -9.50 -41.24 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.03 Total: 4.72 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -3.92 Total: 3.67 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.60 Total: -59.45 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.74 -9.50 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981556708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.137 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds