Wall clock time and date at job start Tue Mar 31 2020 11:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86806 * 120.00039 * 2 1 4 4 H 1.48498 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47134 * 300.00014 * 3 2 1 6 6 H 1.48500 * 109.47076 * 59.99613 * 3 2 1 7 7 C 1.38797 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99665 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00062 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47187 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00277 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00100 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46935 * 179.97438 * 14 13 11 16 16 N 1.46898 * 109.46755 * 179.97438 * 15 14 13 17 17 C 1.46900 * 110.99439 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47072 * 179.97438 * 17 16 15 19 19 H 1.09007 * 115.59887 * 330.87294 * 18 17 16 20 20 C 1.53258 * 117.53121 * 116.73261 * 18 17 16 21 21 C 1.51768 * 117.53339 * 184.99903 * 18 17 16 22 22 C 1.53683 * 122.36501 * 140.86341 * 21 18 17 23 23 C 1.54372 * 103.92686 * 197.03657 * 22 21 18 24 24 O 1.43829 * 107.31476 * 357.18632 * 23 22 21 25 25 C 1.44615 * 107.22436 * 26.12823 * 24 23 22 26 26 H 0.97005 * 119.99642 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46962 * 59.99535 * 10 9 7 28 28 H 1.09001 * 109.46603 * 299.99898 * 10 9 7 29 29 H 0.97002 * 119.99444 * 359.97438 * 13 11 10 30 30 H 1.08995 * 109.46863 * 59.99889 * 14 13 11 31 31 H 1.08999 * 109.46889 * 299.99553 * 14 13 11 32 32 H 1.08997 * 109.46950 * 59.99494 * 15 14 13 33 33 H 1.09002 * 109.46830 * 300.00304 * 15 14 13 34 34 H 1.00896 * 111.00435 * 56.04876 * 16 15 14 35 35 H 1.09000 * 109.47413 * 60.00436 * 17 16 15 36 36 H 1.09001 * 109.47553 * 299.99931 * 17 16 15 37 37 H 1.08996 * 117.52816 * 0.02562 * 20 18 17 38 38 H 1.08998 * 117.53231 * 214.79468 * 20 18 17 39 39 H 1.09002 * 110.56214 * 78.38439 * 22 21 18 40 40 H 1.08995 * 110.56154 * 315.68618 * 22 21 18 41 41 H 1.09002 * 109.87620 * 116.61660 * 23 22 21 42 42 H 1.08997 * 109.87566 * 237.74987 * 23 22 21 43 43 H 1.08997 * 110.64107 * 79.84640 * 25 24 23 44 44 H 1.09003 * 110.64674 * 202.74486 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 6 3.5024 -8.6986 0.0001 16 7 2.9872 -10.0742 0.0007 17 6 4.0870 -11.0481 0.0012 18 6 3.5124 -12.4662 0.0024 19 1 2.5398 -12.5799 0.4813 20 6 3.8127 -13.3533 -1.2107 21 6 4.4916 -13.6198 0.1204 22 6 4.1913 -14.8710 0.9606 23 6 5.5734 -15.5323 1.1494 24 8 6.5279 -14.7465 0.4143 25 6 6.0025 -13.4017 0.3318 26 1 -0.4850 0.8401 -0.0004 27 1 3.1245 -3.7313 0.8905 28 1 3.1244 -3.7313 -0.8895 29 1 3.8009 -6.1834 0.0006 30 1 1.7220 -7.8752 -0.8899 31 1 1.7215 -7.8751 0.8901 32 1 4.1111 -8.5385 0.8900 33 1 4.1110 -8.5384 -0.8899 34 1 2.3674 -10.2286 -0.7804 35 1 4.6995 -10.9040 0.8912 36 1 4.6997 -10.9048 -0.8888 37 1 4.4198 -12.9264 -2.0090 38 1 3.0377 -14.0502 -1.5295 39 1 3.5172 -15.5393 0.4248 40 1 3.7658 -14.5919 1.9245 41 1 5.8380 -15.5427 2.2068 42 1 5.5534 -16.5503 0.7604 43 1 6.1845 -12.8604 1.2602 44 1 6.4390 -12.8697 -0.5135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:01 Heat of formation + Delta-G solvation = -87.903608 kcal Electronic energy + Delta-G solvation = -22251.281257 eV Core-core repulsion = 18715.190748 eV Total energy + Delta-G solvation = -3536.090509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95990 -40.60803 -38.22987 -36.87928 -35.09854 -34.57792 -31.86316 -31.24285 -29.39017 -28.23775 -27.65215 -25.90742 -23.55267 -23.14012 -21.96028 -21.70018 -20.26765 -19.81925 -17.86497 -17.51374 -17.15828 -17.10964 -16.87932 -16.87477 -16.49124 -16.09121 -15.93534 -15.57946 -14.96860 -14.81695 -14.75831 -14.46739 -14.24195 -14.11860 -13.57382 -13.40661 -13.15531 -13.08441 -12.91601 -12.78641 -12.59797 -12.44709 -12.40262 -12.31210 -11.82760 -11.70409 -11.15453 -11.01669 -10.97276 -10.73134 -10.58916 -10.26643 -10.13666 -9.45636 -8.66449 -8.34411 -6.12555 1.27198 1.42059 1.47481 1.58588 1.61003 2.18327 2.27980 2.57828 2.99972 3.01788 3.21148 3.35715 3.41914 3.71383 3.85787 3.90995 3.92974 4.03791 4.13523 4.19199 4.30875 4.32518 4.44294 4.49029 4.51198 4.51948 4.65802 4.74228 4.77482 4.80860 4.84242 4.90423 4.92773 4.96249 5.05813 5.10838 5.26323 5.40810 5.42810 5.86526 5.96922 6.20548 6.36961 6.50160 7.07119 7.24399 8.75102 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.046794 B = 0.001542 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.224091 B =18152.241189 C =18531.791197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.124 3.876 15 C 0.063 3.937 16 N -0.693 5.693 17 C 0.094 3.906 18 C -0.123 4.123 19 H 0.113 0.887 20 C -0.156 4.156 21 C -0.164 4.164 22 C -0.119 4.119 23 C 0.043 3.957 24 O -0.404 6.404 25 C 0.080 3.920 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.417 0.583 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.349 0.651 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.719 -30.114 -0.059 33.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.366 5.366 14 C 0.000 4.000 15 C -0.067 4.067 16 N -0.325 5.325 17 C -0.035 4.035 18 C -0.141 4.141 19 H 0.131 0.869 20 C -0.192 4.192 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.033 4.033 24 O -0.323 6.323 25 C 0.004 3.996 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.255 0.745 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.725 -30.492 0.545 33.045 hybrid contribution 1.801 1.397 -0.761 2.403 sum 14.526 -29.095 -0.216 32.521 Atomic orbital electron populations 1.70197 1.08000 1.28542 1.48082 1.26134 0.95957 1.03335 0.93728 0.84894 0.78621 0.76298 0.78049 1.17977 1.19953 1.19978 1.23249 0.95394 0.91965 1.58773 0.89809 1.85606 1.10693 0.99337 1.97058 1.23367 1.03512 0.94187 1.06947 1.20077 0.86199 0.86731 0.75104 1.90699 1.17534 1.86125 1.50147 1.45605 1.10393 1.05014 1.75601 1.21207 0.97064 0.79827 1.01888 1.21944 0.95000 0.87296 1.02449 1.60248 1.19506 1.01767 1.51010 1.21477 0.92061 0.88780 1.01178 1.22141 0.99540 0.90183 1.02257 0.86863 1.23140 1.02635 1.02718 0.90756 1.22240 0.94682 0.98004 1.01606 1.22361 0.97719 0.95011 1.00512 1.23329 0.87373 0.95961 0.96623 1.88882 1.45081 1.21728 1.76644 1.22996 0.90137 0.84367 1.02080 0.92002 0.87059 0.87037 0.74542 0.92491 0.92333 0.89398 0.92960 0.83236 0.90371 0.93979 0.88120 0.87854 0.89630 0.89535 0.91568 0.89044 0.91089 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -31.07 9.50 67.95 0.65 -30.42 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.13 -5.02 6.16 71.23 0.44 -4.58 16 11 C 0.53 19.42 7.85 87.66 0.69 20.11 16 12 O -0.57 -26.40 15.86 -3.04 -0.05 -26.45 16 13 N -0.71 -17.01 5.56 -463.05 -2.57 -19.59 16 14 C 0.12 2.63 5.93 86.38 0.51 3.15 16 15 C 0.06 0.83 5.80 86.30 0.50 1.33 16 16 N -0.69 -8.93 6.50 -513.88 -3.34 -12.27 16 17 C 0.09 0.95 5.35 86.30 0.46 1.41 16 18 C -0.12 -1.22 5.86 -11.11 -0.07 -1.29 16 19 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 20 C -0.16 -1.45 9.99 30.28 0.30 -1.15 16 21 C -0.16 -1.70 2.40 -52.38 -0.13 -1.83 16 22 C -0.12 -1.08 6.84 31.29 0.21 -0.87 16 23 C 0.04 0.47 7.72 72.45 0.56 1.03 16 24 O -0.40 -6.58 11.52 -148.98 -1.72 -8.30 16 25 C 0.08 0.95 6.87 72.36 0.50 1.45 16 26 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 27 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 28 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.42 6.79 8.47 -92.71 -0.79 6.01 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.35 4.24 8.73 -89.70 -0.78 3.45 16 35 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 36 H 0.04 0.38 7.88 -2.39 -0.02 0.36 16 37 H 0.10 0.88 8.04 -2.39 -0.02 0.86 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.65 8.13 -2.39 -0.02 0.63 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.39 381.23 -2.00 -79.40 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.57 Total: 17.66 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 5.10 Total: -10.45 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -5.63 Total: -87.58 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.77 Total: -34.75 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -77.39 -2.00 -79.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.508 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds