Wall clock time and date at job start Tue Mar 31 2020 10:44:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50694 * 109.47123 * 2 1
4 4 C 1.38013 * 126.31252 * 270.13944 * 3 2 1
5 5 C 1.47423 * 126.40625 * 0.02562 * 4 3 2
6 6 O 1.21606 * 120.00158 * 0.28239 * 5 4 3
7 7 N 1.34780 * 119.99937 * 180.27992 * 5 4 3
8 8 C 1.46502 * 119.99694 * 179.97438 * 7 5 4
9 9 H 1.09000 * 109.47603 * 324.99984 * 8 7 5
10 10 C 1.52999 * 109.47133 * 85.00426 * 8 7 5
11 11 C 1.50704 * 109.46866 * 205.00160 * 8 7 5
12 12 H 1.07990 * 120.00158 * 359.97438 * 11 8 7
13 13 C 1.37885 * 119.99812 * 180.02562 * 11 8 7
14 14 N 1.31509 * 119.99807 * 359.97438 * 13 11 8
15 15 Si 1.86800 * 119.99823 * 179.97438 * 13 11 8
16 16 H 1.48491 * 109.47065 * 90.00080 * 15 13 11
17 17 H 1.48500 * 109.46814 * 210.00214 * 15 13 11
18 18 H 1.48499 * 109.46961 * 330.00150 * 15 13 11
19 19 C 1.41372 * 107.18810 * 180.26289 * 4 3 2
20 20 N 1.30437 * 108.07671 * 359.77326 * 19 4 3
21 21 N 1.34617 * 126.32012 * 90.02543 * 3 2 1
22 22 C 1.39809 * 125.77536 * 359.97438 * 21 3 2
23 23 C 1.38950 * 119.69070 * 154.71867 * 22 21 3
24 24 C 1.38417 * 119.10913 * 180.28176 * 23 22 21
25 25 C 1.38806 * 118.48047 * 359.45402 * 24 23 22
26 26 C 1.38134 * 119.29214 * 0.52499 * 25 24 23
27 27 N 1.31889 * 120.83898 * 359.74375 * 26 25 24
28 28 H 1.08996 * 109.47069 * 60.00399 * 1 2 3
29 29 H 1.09002 * 109.47129 * 180.02562 * 1 2 3
30 30 H 1.08996 * 109.46999 * 299.99788 * 1 2 3
31 31 H 1.09002 * 109.46921 * 239.99509 * 2 1 3
32 32 H 1.09008 * 109.47371 * 119.99669 * 2 1 3
33 33 H 0.96989 * 120.00132 * 0.02562 * 7 5 4
34 34 H 1.09000 * 109.47237 * 59.99333 * 10 8 7
35 35 H 1.08999 * 109.47264 * 180.02562 * 10 8 7
36 36 H 1.09007 * 109.46796 * 299.99701 * 10 8 7
37 37 H 0.97004 * 120.00089 * 179.97438 * 14 13 11
38 38 H 1.07999 * 125.95724 * 179.82112 * 19 4 3
39 39 H 1.08002 * 120.44182 * 359.97438 * 23 22 21
40 40 H 1.07999 * 120.75999 * 179.72386 * 24 23 22
41 41 H 1.07994 * 120.34955 * 180.24582 * 25 24 23
42 42 H 1.07997 * 119.57550 * 179.72365 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.3022 2.1922 -1.1121
5 6 2.1525 1.7806 -2.5198
6 8 1.7511 0.6644 -2.7875
7 7 2.4604 2.6416 -3.5100
8 6 2.3122 2.2323 -4.9089
9 1 2.5589 1.1751 -5.0063
10 6 0.8675 2.4623 -5.3571
11 6 3.2415 3.0466 -5.7716
12 1 3.8785 3.7944 -5.3229
13 6 3.2778 2.8376 -7.1341
14 7 2.5017 1.9273 -7.6805
15 14 4.4292 3.8474 -8.2036
16 1 5.7381 3.1548 -8.3129
17 1 3.8377 4.0045 -9.5566
18 1 4.6271 5.1858 -7.5913
19 6 2.7543 3.4491 -0.6490
20 7 2.7480 3.4260 0.6552
21 7 2.2985 2.1723 1.0846
22 6 2.1554 1.7671 2.4150
23 6 2.9174 2.3746 3.4054
24 6 2.7702 1.9600 4.7178
25 6 1.8534 0.9555 4.9957
26 6 1.1289 0.3965 3.9609
27 7 1.2952 0.8089 2.7192
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8933 -0.5139 -0.8900
32 1 1.8934 -0.5138 0.8901
33 1 2.7809 3.5318 -3.2965
34 1 0.6208 3.5195 -5.2597
35 1 0.7571 2.1574 -6.3978
36 1 0.1953 1.8733 -4.7331
37 1 2.5269 1.7805 -8.6390
38 1 3.0522 4.2830 -1.2672
39 1 3.6188 3.1564 3.1538
40 1 3.3522 2.4107 5.5080
41 1 1.7114 0.6116 6.0095
42 1 0.4176 -0.3884 4.1714
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000064318138.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:44:31
Heat of formation + Delta-G solvation = 78.409208 kcal
Electronic energy + Delta-G solvation = -25521.833368 eV
Core-core repulsion = 21889.803523 eV
Total energy + Delta-G solvation = -3632.029845 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.148 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.86248 -40.20035 -38.32688 -34.83512 -34.28584 -33.33983 -32.77630 -32.25095
-29.99344 -29.51415 -28.29483 -25.21316 -24.62492 -24.14335 -23.41717 -22.24562
-21.15742 -20.07292 -19.19754 -17.89487 -17.02661 -16.79647 -16.31316 -15.73444
-15.52157 -15.12162 -14.73963 -14.39264 -14.31750 -14.16946 -13.96648 -13.50022
-13.47560 -13.10235 -12.94026 -12.41687 -12.33370 -12.11342 -11.64685 -11.48383
-11.08612 -11.02549 -10.93759 -10.70713 -10.61879 -10.54800 -10.27738 -10.22831
-10.18036 -9.92799 -9.05225 -8.98678 -8.96837 -8.50293 -8.42913 -7.78046
-6.07893 -4.16636 0.37714 0.79381 1.77564 1.96943 2.30957 3.27786
3.34307 3.36085 3.36954 3.95749 4.11780 4.18505 4.29402 4.45199
4.49781 4.61288 4.62068 4.78043 4.97947 5.12756 5.24580 5.30457
5.34392 5.53879 5.56786 5.65261 5.72489 5.84564 5.96756 6.08423
6.14923 6.38074 6.43276 6.49524 6.90346 6.94505 7.05035 7.21943
7.22431 7.54329 7.62728 7.66843 7.77077 7.98796 8.20856 8.75866
8.85124 9.23056 9.51190 10.98140
Molecular weight = 314.15amu
Principal moments of inertia in cm(-1)
A = 0.029068 B = 0.002881 C = 0.002685
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 963.011313 B = 9717.242290 C =10426.333405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.058 4.058
3 C 0.177 3.823
4 C -0.276 4.276
5 C 0.580 3.420
6 O -0.554 6.554
7 N -0.704 5.704
8 C 0.267 3.733
9 H 0.050 0.950
10 C -0.147 4.147
11 C -0.532 4.532
12 H 0.061 0.939
13 C 0.066 3.934
14 N -0.884 5.884
15 Si 0.901 3.099
16 H -0.280 1.280
17 H -0.286 1.286
18 H -0.274 1.274
19 C 0.101 3.899
20 N -0.296 5.296
21 N -0.323 5.323
22 C 0.370 3.630
23 C -0.159 4.159
24 C -0.056 4.056
25 C -0.185 4.185
26 C 0.129 3.871
27 N -0.492 5.492
28 H 0.058 0.942
29 H 0.060 0.940
30 H 0.057 0.943
31 H 0.107 0.893
32 H 0.075 0.925
33 H 0.386 0.614
34 H 0.026 0.974
35 H 0.089 0.911
36 H 0.015 0.985
37 H 0.264 0.736
38 H 0.199 0.801
39 H 0.147 0.853
40 H 0.143 0.857
41 H 0.141 0.859
42 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.154 -0.554 24.890 24.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.097 4.097
3 C 0.050 3.950
4 C -0.290 4.290
5 C 0.365 3.635
6 O -0.434 6.434
7 N -0.351 5.351
8 C 0.165 3.835
9 H 0.067 0.933
10 C -0.206 4.206
11 C -0.571 4.571
12 H 0.079 0.921
13 C -0.137 4.137
14 N -0.521 5.521
15 Si 0.728 3.272
16 H -0.206 1.206
17 H -0.211 1.211
18 H -0.199 1.199
19 C -0.089 4.089
20 N -0.113 5.113
21 N -0.099 5.099
22 C 0.143 3.857
23 C -0.181 4.181
24 C -0.082 4.082
25 C -0.206 4.206
26 C -0.029 4.029
27 N -0.205 5.205
28 H 0.077 0.923
29 H 0.079 0.921
30 H 0.076 0.924
31 H 0.125 0.875
32 H 0.093 0.907
33 H 0.219 0.781
34 H 0.045 0.955
35 H 0.108 0.892
36 H 0.034 0.966
37 H 0.074 0.926
38 H 0.216 0.784
39 H 0.165 0.835
40 H 0.161 0.839
41 H 0.159 0.841
42 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -1.740 -1.153 24.914 25.002
hybrid contribution 1.141 1.144 -0.592 1.720
sum -0.599 -0.009 24.323 24.330
Atomic orbital electron populations
1.21537 0.93199 1.02012 1.02077 1.20398 0.97503 0.87677 1.04080
1.21819 0.92979 0.95186 0.85036 1.20517 1.17955 0.95554 0.94970
1.17107 0.78159 0.85121 0.83080 1.90695 1.48073 1.20641 1.84025
1.46308 1.65055 1.15709 1.08003 1.18726 0.93294 0.97214 0.74223
0.93266 1.22077 0.97099 0.98054 1.03320 1.21232 1.22591 1.21124
0.92137 0.92069 1.24881 0.95727 0.95295 0.97811 1.69905 1.38002
1.32467 1.11743 0.86461 0.80718 0.80339 0.79648 1.20610 1.21125
1.19851 1.24309 0.95345 0.97687 0.91523 1.77227 1.23115 0.97413
1.13533 1.45379 1.50888 1.10863 1.02720 1.17733 0.92920 0.92997
0.82055 1.21709 1.01270 1.02605 0.92534 1.21536 0.96036 0.94774
0.95842 1.22192 0.98479 0.98608 1.01283 1.22614 0.96950 0.97452
0.85911 1.67105 1.17086 1.13250 1.23052 0.92265 0.92103 0.92391
0.87511 0.90663 0.78134 0.95518 0.89212 0.96568 0.92628 0.78405
0.83549 0.83886 0.84080 0.81608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.85 9.77 37.16 0.36 -1.49 16
2 C -0.06 -0.88 5.00 -27.89 -0.14 -1.02 16
3 C 0.18 2.91 6.20 -81.46 -0.50 2.41 16
4 C -0.28 -4.86 6.13 -105.05 -0.64 -5.50 16
5 C 0.58 12.20 7.78 -12.52 -0.10 12.10 16
6 O -0.55 -13.27 14.51 5.27 0.08 -13.19 16
7 N -0.70 -15.01 5.06 -56.01 -0.28 -15.30 16
8 C 0.27 6.85 2.56 -69.08 -0.18 6.67 16
9 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16
10 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16
11 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16
12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16
13 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16
14 N -0.88 -25.01 11.32 55.43 0.63 -24.38 16
15 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16
16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16
19 C 0.10 1.50 11.50 -16.95 -0.20 1.30 16
20 N -0.30 -4.47 12.00 30.88 0.37 -4.10 16
21 N -0.32 -4.90 3.73 -8.02 -0.03 -4.93 16
22 C 0.37 4.74 7.28 -154.37 -1.12 3.62 16
23 C -0.16 -1.60 9.73 -39.25 -0.38 -1.98 16
24 C -0.06 -0.38 10.17 -39.31 -0.40 -0.78 16
25 C -0.19 -1.12 10.11 -39.41 -0.40 -1.51 16
26 C 0.13 1.00 11.18 -17.57 -0.20 0.80 16
27 N -0.49 -5.68 6.97 -12.29 -0.09 -5.77 16
28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
30 H 0.06 0.79 7.13 -51.93 -0.37 0.42 16
31 H 0.11 1.83 6.52 -51.93 -0.34 1.49 16
32 H 0.07 1.03 6.87 -51.92 -0.36 0.67 16
33 H 0.39 7.08 7.49 -40.82 -0.31 6.77 16
34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16
36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
38 H 0.20 2.27 7.50 -52.49 -0.39 1.88 16
39 H 0.15 1.43 7.89 -52.49 -0.41 1.02 16
40 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16
41 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16
42 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16
LS Contribution 354.97 15.07 5.35 5.35
Total: -1.00 -32.86 354.97 -8.33 -41.19
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: -5.39 Total: 6.90 kcal
Atomic # 6 Polarization: 2.45 SS G_CDS: -3.95 Total: -1.49 kcal
Atomic # 7 Polarization: -55.07 SS G_CDS: 0.60 Total: -54.47 kcal
Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal
Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -32.86 -8.33 -41.19 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000064318138.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.604 kcal
(2) G-P(sol) polarization free energy of solvation -32.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds