Wall clock time and date at job start Tue Mar 31 2020 10:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47123 * 2 1 4 4 C 1.38013 * 126.31252 * 270.13944 * 3 2 1 5 5 C 1.47423 * 126.40625 * 0.02562 * 4 3 2 6 6 O 1.21606 * 120.00158 * 0.28239 * 5 4 3 7 7 N 1.34780 * 119.99937 * 180.27992 * 5 4 3 8 8 C 1.46502 * 119.99694 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47603 * 324.99984 * 8 7 5 10 10 C 1.52999 * 109.47133 * 85.00426 * 8 7 5 11 11 C 1.50704 * 109.46866 * 205.00160 * 8 7 5 12 12 H 1.07990 * 120.00158 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99812 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99807 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99823 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47065 * 90.00080 * 15 13 11 17 17 H 1.48500 * 109.46814 * 210.00214 * 15 13 11 18 18 H 1.48499 * 109.46961 * 330.00150 * 15 13 11 19 19 C 1.41372 * 107.18810 * 180.26289 * 4 3 2 20 20 N 1.30437 * 108.07671 * 359.77326 * 19 4 3 21 21 N 1.34617 * 126.32012 * 90.02543 * 3 2 1 22 22 C 1.39809 * 125.77536 * 359.97438 * 21 3 2 23 23 C 1.38950 * 119.69070 * 154.71867 * 22 21 3 24 24 C 1.38417 * 119.10913 * 180.28176 * 23 22 21 25 25 C 1.38806 * 118.48047 * 359.45402 * 24 23 22 26 26 C 1.38134 * 119.29214 * 0.52499 * 25 24 23 27 27 N 1.31889 * 120.83898 * 359.74375 * 26 25 24 28 28 H 1.08996 * 109.47069 * 60.00399 * 1 2 3 29 29 H 1.09002 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46999 * 299.99788 * 1 2 3 31 31 H 1.09002 * 109.46921 * 239.99509 * 2 1 3 32 32 H 1.09008 * 109.47371 * 119.99669 * 2 1 3 33 33 H 0.96989 * 120.00132 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47237 * 59.99333 * 10 8 7 35 35 H 1.08999 * 109.47264 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46796 * 299.99701 * 10 8 7 37 37 H 0.97004 * 120.00089 * 179.97438 * 14 13 11 38 38 H 1.07999 * 125.95724 * 179.82112 * 19 4 3 39 39 H 1.08002 * 120.44182 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.75999 * 179.72386 * 24 23 22 41 41 H 1.07994 * 120.34955 * 180.24582 * 25 24 23 42 42 H 1.07997 * 119.57550 * 179.72365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3022 2.1922 -1.1121 5 6 2.1525 1.7806 -2.5198 6 8 1.7511 0.6644 -2.7875 7 7 2.4604 2.6416 -3.5100 8 6 2.3122 2.2323 -4.9089 9 1 2.5589 1.1751 -5.0063 10 6 0.8675 2.4623 -5.3571 11 6 3.2415 3.0466 -5.7716 12 1 3.8785 3.7944 -5.3229 13 6 3.2778 2.8376 -7.1341 14 7 2.5017 1.9273 -7.6805 15 14 4.4292 3.8474 -8.2036 16 1 5.7381 3.1548 -8.3129 17 1 3.8377 4.0045 -9.5566 18 1 4.6271 5.1858 -7.5913 19 6 2.7543 3.4491 -0.6490 20 7 2.7480 3.4260 0.6552 21 7 2.2985 2.1723 1.0846 22 6 2.1554 1.7671 2.4150 23 6 2.9174 2.3746 3.4054 24 6 2.7702 1.9600 4.7178 25 6 1.8534 0.9555 4.9957 26 6 1.1289 0.3965 3.9609 27 7 1.2952 0.8089 2.7192 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 2.7809 3.5318 -3.2965 34 1 0.6208 3.5195 -5.2597 35 1 0.7571 2.1574 -6.3978 36 1 0.1953 1.8733 -4.7331 37 1 2.5269 1.7805 -8.6390 38 1 3.0522 4.2830 -1.2672 39 1 3.6188 3.1564 3.1538 40 1 3.3522 2.4107 5.5080 41 1 1.7114 0.6116 6.0095 42 1 0.4176 -0.3884 4.1714 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:31 Heat of formation + Delta-G solvation = 78.409208 kcal Electronic energy + Delta-G solvation = -25521.833368 eV Core-core repulsion = 21889.803523 eV Total energy + Delta-G solvation = -3632.029845 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86248 -40.20035 -38.32688 -34.83512 -34.28584 -33.33983 -32.77630 -32.25095 -29.99344 -29.51415 -28.29483 -25.21316 -24.62492 -24.14335 -23.41717 -22.24562 -21.15742 -20.07292 -19.19754 -17.89487 -17.02661 -16.79647 -16.31316 -15.73444 -15.52157 -15.12162 -14.73963 -14.39264 -14.31750 -14.16946 -13.96648 -13.50022 -13.47560 -13.10235 -12.94026 -12.41687 -12.33370 -12.11342 -11.64685 -11.48383 -11.08612 -11.02549 -10.93759 -10.70713 -10.61879 -10.54800 -10.27738 -10.22831 -10.18036 -9.92799 -9.05225 -8.98678 -8.96837 -8.50293 -8.42913 -7.78046 -6.07893 -4.16636 0.37714 0.79381 1.77564 1.96943 2.30957 3.27786 3.34307 3.36085 3.36954 3.95749 4.11780 4.18505 4.29402 4.45199 4.49781 4.61288 4.62068 4.78043 4.97947 5.12756 5.24580 5.30457 5.34392 5.53879 5.56786 5.65261 5.72489 5.84564 5.96756 6.08423 6.14923 6.38074 6.43276 6.49524 6.90346 6.94505 7.05035 7.21943 7.22431 7.54329 7.62728 7.66843 7.77077 7.98796 8.20856 8.75866 8.85124 9.23056 9.51190 10.98140 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002881 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.011313 B = 9717.242290 C =10426.333405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C 0.177 3.823 4 C -0.276 4.276 5 C 0.580 3.420 6 O -0.554 6.554 7 N -0.704 5.704 8 C 0.267 3.733 9 H 0.050 0.950 10 C -0.147 4.147 11 C -0.532 4.532 12 H 0.061 0.939 13 C 0.066 3.934 14 N -0.884 5.884 15 Si 0.901 3.099 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.101 3.899 20 N -0.296 5.296 21 N -0.323 5.323 22 C 0.370 3.630 23 C -0.159 4.159 24 C -0.056 4.056 25 C -0.185 4.185 26 C 0.129 3.871 27 N -0.492 5.492 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.386 0.614 34 H 0.026 0.974 35 H 0.089 0.911 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.199 0.801 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 -0.554 24.890 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.097 4.097 3 C 0.050 3.950 4 C -0.290 4.290 5 C 0.365 3.635 6 O -0.434 6.434 7 N -0.351 5.351 8 C 0.165 3.835 9 H 0.067 0.933 10 C -0.206 4.206 11 C -0.571 4.571 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.728 3.272 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.089 4.089 20 N -0.113 5.113 21 N -0.099 5.099 22 C 0.143 3.857 23 C -0.181 4.181 24 C -0.082 4.082 25 C -0.206 4.206 26 C -0.029 4.029 27 N -0.205 5.205 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.216 0.784 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.740 -1.153 24.914 25.002 hybrid contribution 1.141 1.144 -0.592 1.720 sum -0.599 -0.009 24.323 24.330 Atomic orbital electron populations 1.21537 0.93199 1.02012 1.02077 1.20398 0.97503 0.87677 1.04080 1.21819 0.92979 0.95186 0.85036 1.20517 1.17955 0.95554 0.94970 1.17107 0.78159 0.85121 0.83080 1.90695 1.48073 1.20641 1.84025 1.46308 1.65055 1.15709 1.08003 1.18726 0.93294 0.97214 0.74223 0.93266 1.22077 0.97099 0.98054 1.03320 1.21232 1.22591 1.21124 0.92137 0.92069 1.24881 0.95727 0.95295 0.97811 1.69905 1.38002 1.32467 1.11743 0.86461 0.80718 0.80339 0.79648 1.20610 1.21125 1.19851 1.24309 0.95345 0.97687 0.91523 1.77227 1.23115 0.97413 1.13533 1.45379 1.50888 1.10863 1.02720 1.17733 0.92920 0.92997 0.82055 1.21709 1.01270 1.02605 0.92534 1.21536 0.96036 0.94774 0.95842 1.22192 0.98479 0.98608 1.01283 1.22614 0.96950 0.97452 0.85911 1.67105 1.17086 1.13250 1.23052 0.92265 0.92103 0.92391 0.87511 0.90663 0.78134 0.95518 0.89212 0.96568 0.92628 0.78405 0.83549 0.83886 0.84080 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.77 37.16 0.36 -1.49 16 2 C -0.06 -0.88 5.00 -27.89 -0.14 -1.02 16 3 C 0.18 2.91 6.20 -81.46 -0.50 2.41 16 4 C -0.28 -4.86 6.13 -105.05 -0.64 -5.50 16 5 C 0.58 12.20 7.78 -12.52 -0.10 12.10 16 6 O -0.55 -13.27 14.51 5.27 0.08 -13.19 16 7 N -0.70 -15.01 5.06 -56.01 -0.28 -15.30 16 8 C 0.27 6.85 2.56 -69.08 -0.18 6.67 16 9 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 10 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 11 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 14 N -0.88 -25.01 11.32 55.43 0.63 -24.38 16 15 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 C 0.10 1.50 11.50 -16.95 -0.20 1.30 16 20 N -0.30 -4.47 12.00 30.88 0.37 -4.10 16 21 N -0.32 -4.90 3.73 -8.02 -0.03 -4.93 16 22 C 0.37 4.74 7.28 -154.37 -1.12 3.62 16 23 C -0.16 -1.60 9.73 -39.25 -0.38 -1.98 16 24 C -0.06 -0.38 10.17 -39.31 -0.40 -0.78 16 25 C -0.19 -1.12 10.11 -39.41 -0.40 -1.51 16 26 C 0.13 1.00 11.18 -17.57 -0.20 0.80 16 27 N -0.49 -5.68 6.97 -12.29 -0.09 -5.77 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.79 7.13 -51.93 -0.37 0.42 16 31 H 0.11 1.83 6.52 -51.93 -0.34 1.49 16 32 H 0.07 1.03 6.87 -51.92 -0.36 0.67 16 33 H 0.39 7.08 7.49 -40.82 -0.31 6.77 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.20 2.27 7.50 -52.49 -0.39 1.88 16 39 H 0.15 1.43 7.89 -52.49 -0.41 1.02 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 42 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -32.86 354.97 -8.33 -41.19 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.39 Total: 6.90 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.95 Total: -1.49 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.60 Total: -54.47 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.86 -8.33 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.604 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds