Wall clock time and date at job start Tue Mar 31 2020 10:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47123 * 2 1 4 4 C 1.38013 * 126.31252 * 270.13944 * 3 2 1 5 5 C 1.47423 * 126.40625 * 0.02562 * 4 3 2 6 6 O 1.21606 * 120.00158 * 0.28239 * 5 4 3 7 7 N 1.34780 * 119.99937 * 180.27992 * 5 4 3 8 8 C 1.46502 * 119.99694 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47603 * 324.99984 * 8 7 5 10 10 C 1.52999 * 109.47133 * 85.00426 * 8 7 5 11 11 C 1.50704 * 109.46866 * 205.00160 * 8 7 5 12 12 H 1.07990 * 120.00158 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99812 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99807 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99823 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47065 * 90.00080 * 15 13 11 17 17 H 1.48500 * 109.46814 * 210.00214 * 15 13 11 18 18 H 1.48499 * 109.46961 * 330.00150 * 15 13 11 19 19 C 1.41372 * 107.18810 * 180.26289 * 4 3 2 20 20 N 1.30437 * 108.07671 * 359.77326 * 19 4 3 21 21 N 1.34617 * 126.32012 * 90.02543 * 3 2 1 22 22 C 1.39809 * 125.77536 * 359.97438 * 21 3 2 23 23 C 1.38950 * 119.69070 * 154.71867 * 22 21 3 24 24 C 1.38417 * 119.10913 * 180.28176 * 23 22 21 25 25 C 1.38806 * 118.48047 * 359.45402 * 24 23 22 26 26 C 1.38134 * 119.29214 * 0.52499 * 25 24 23 27 27 N 1.31889 * 120.83898 * 359.74375 * 26 25 24 28 28 H 1.08996 * 109.47069 * 60.00399 * 1 2 3 29 29 H 1.09002 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46999 * 299.99788 * 1 2 3 31 31 H 1.09002 * 109.46921 * 239.99509 * 2 1 3 32 32 H 1.09008 * 109.47371 * 119.99669 * 2 1 3 33 33 H 0.96989 * 120.00132 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47237 * 59.99333 * 10 8 7 35 35 H 1.08999 * 109.47264 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46796 * 299.99701 * 10 8 7 37 37 H 0.97004 * 120.00089 * 179.97438 * 14 13 11 38 38 H 1.07999 * 125.95724 * 179.82112 * 19 4 3 39 39 H 1.08002 * 120.44182 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.75999 * 179.72386 * 24 23 22 41 41 H 1.07994 * 120.34955 * 180.24582 * 25 24 23 42 42 H 1.07997 * 119.57550 * 179.72365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3022 2.1922 -1.1121 5 6 2.1525 1.7806 -2.5198 6 8 1.7511 0.6644 -2.7875 7 7 2.4604 2.6416 -3.5100 8 6 2.3122 2.2323 -4.9089 9 1 2.5589 1.1751 -5.0063 10 6 0.8675 2.4623 -5.3571 11 6 3.2415 3.0466 -5.7716 12 1 3.8785 3.7944 -5.3229 13 6 3.2778 2.8376 -7.1341 14 7 2.5017 1.9273 -7.6805 15 14 4.4292 3.8474 -8.2036 16 1 5.7381 3.1548 -8.3129 17 1 3.8377 4.0045 -9.5566 18 1 4.6271 5.1858 -7.5913 19 6 2.7543 3.4491 -0.6490 20 7 2.7480 3.4260 0.6552 21 7 2.2985 2.1723 1.0846 22 6 2.1554 1.7671 2.4150 23 6 2.9174 2.3746 3.4054 24 6 2.7702 1.9600 4.7178 25 6 1.8534 0.9555 4.9957 26 6 1.1289 0.3965 3.9609 27 7 1.2952 0.8089 2.7192 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 2.7809 3.5318 -3.2965 34 1 0.6208 3.5195 -5.2597 35 1 0.7571 2.1574 -6.3978 36 1 0.1953 1.8733 -4.7331 37 1 2.5269 1.7805 -8.6390 38 1 3.0522 4.2830 -1.2672 39 1 3.6188 3.1564 3.1538 40 1 3.3522 2.4107 5.5080 41 1 1.7114 0.6116 6.0095 42 1 0.4176 -0.3884 4.1714 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:30 Heat of formation + Delta-G solvation = 58.272760 kcal Electronic energy + Delta-G solvation = -25522.706550 eV Core-core repulsion = 21889.803523 eV Total energy + Delta-G solvation = -3632.903026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.97438 -41.01409 -39.99770 -36.69567 -35.43234 -34.43462 -34.18936 -33.44796 -31.39980 -30.64805 -29.84037 -27.30560 -25.76780 -24.88536 -24.43670 -23.68902 -22.49390 -21.44829 -20.81372 -19.19050 -18.48848 -17.54333 -17.36149 -17.08038 -16.95163 -16.59782 -16.11022 -15.71306 -15.53225 -15.33226 -15.20130 -14.74571 -14.62960 -14.40227 -14.19500 -14.06419 -13.65048 -13.32621 -13.00481 -12.95402 -12.85373 -12.74917 -12.60964 -12.27856 -12.22583 -12.09036 -11.81471 -11.48836 -11.06893 -10.96796 -10.78402 -10.60811 -10.53037 -10.13595 -9.72707 -9.39809 -8.14184 -6.31124 -0.45183 0.19056 0.67414 0.94450 1.07939 1.47319 1.47820 1.58599 2.38135 2.52468 2.62661 2.75426 3.16400 3.21629 3.33905 3.58844 3.87240 3.90520 4.02292 4.06073 4.15088 4.30759 4.35423 4.37992 4.60437 4.68567 4.74131 4.81692 4.96752 4.97997 5.00180 5.13723 5.15273 5.18554 5.24021 5.30265 5.46954 5.49380 5.65848 5.74363 5.91369 5.96428 6.13736 6.21112 6.76436 6.81839 7.03909 7.35831 7.60320 8.92372 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002881 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.011313 B = 9717.242290 C =10426.333405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.051 4.051 3 C 0.173 3.827 4 C -0.304 4.304 5 C 0.580 3.420 6 O -0.592 6.592 7 N -0.699 5.699 8 C 0.275 3.725 9 H 0.000 1.000 10 C -0.133 4.133 11 C -0.545 4.545 12 H 0.075 0.925 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.972 3.028 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.259 1.259 19 C 0.106 3.894 20 N -0.299 5.299 21 N -0.318 5.318 22 C 0.321 3.679 23 C -0.165 4.165 24 C -0.051 4.051 25 C -0.161 4.161 26 C 0.118 3.882 27 N -0.516 5.516 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.403 0.597 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.011 0.989 37 H 0.265 0.735 38 H 0.228 0.772 39 H 0.142 0.858 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 0.585 28.152 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.090 4.090 3 C 0.044 3.956 4 C -0.318 4.318 5 C 0.368 3.632 6 O -0.475 6.475 7 N -0.348 5.348 8 C 0.172 3.828 9 H 0.018 0.982 10 C -0.192 4.192 11 C -0.584 4.584 12 H 0.093 0.907 13 C -0.186 4.186 14 N -0.556 5.556 15 Si 0.797 3.203 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.183 1.183 19 C -0.083 4.083 20 N -0.116 5.116 21 N -0.092 5.092 22 C 0.097 3.903 23 C -0.187 4.187 24 C -0.077 4.077 25 C -0.181 4.181 26 C -0.040 4.040 27 N -0.229 5.229 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.238 0.762 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.245 0.755 39 H 0.160 0.840 40 H 0.196 0.804 41 H 0.200 0.800 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.024 0.025 28.243 28.262 hybrid contribution 0.873 0.671 -1.326 1.723 sum -0.151 0.695 26.917 26.927 Atomic orbital electron populations 1.21442 0.92444 1.02909 1.00912 1.20321 0.98018 0.87224 1.03469 1.21964 0.92488 0.95607 0.85555 1.20192 1.21009 0.97515 0.93094 1.17527 0.76953 0.84369 0.84364 1.90666 1.49656 1.22241 1.84888 1.46011 1.65535 1.16666 1.06541 1.18331 0.93407 0.94545 0.76562 0.98163 1.21901 0.96967 0.98602 1.01742 1.21558 1.22866 1.21335 0.92594 0.90728 1.25796 0.97229 0.96313 0.99253 1.70057 1.39536 1.33971 1.12064 0.85343 0.78228 0.79176 0.77575 1.20447 1.20999 1.18290 1.24686 0.94651 0.97391 0.91604 1.77173 1.23189 0.97798 1.13425 1.45561 1.49790 1.10319 1.03575 1.18058 0.95574 0.95381 0.81321 1.21847 1.00913 1.02481 0.93486 1.21994 0.96066 0.94520 0.95085 1.22688 0.96077 0.96637 1.02674 1.23276 0.97591 0.97984 0.85128 1.67023 1.17402 1.13275 1.25202 0.95063 0.90203 0.91648 0.90049 0.89084 0.76207 0.94160 0.91402 0.96993 0.92588 0.75537 0.83976 0.80396 0.79953 0.78743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.46 9.77 71.98 0.70 -2.76 16 2 C -0.05 -1.62 5.00 29.85 0.15 -1.47 16 3 C 0.17 5.87 6.20 42.08 0.26 6.13 16 4 C -0.30 -11.02 6.13 -20.14 -0.12 -11.14 16 5 C 0.58 25.56 7.78 86.66 0.67 26.23 16 6 O -0.59 -30.21 14.51 -4.05 -0.06 -30.27 16 7 N -0.70 -30.70 5.06 -449.36 -2.27 -32.98 16 8 C 0.27 14.64 2.56 44.25 0.11 14.76 16 9 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 10 C -0.13 -6.96 9.26 71.98 0.67 -6.30 16 11 C -0.55 -29.27 8.73 25.60 0.22 -29.05 16 12 H 0.07 3.72 7.74 -2.92 -0.02 3.69 16 13 C 0.01 0.76 5.30 84.66 0.45 1.21 16 14 N -0.92 -53.32 11.32 21.45 0.24 -53.07 16 15 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 C 0.11 3.11 11.50 85.67 0.99 4.10 16 20 N -0.30 -8.92 12.00 -56.23 -0.67 -9.60 16 21 N -0.32 -9.64 3.73 -179.30 -0.67 -10.31 16 22 C 0.32 7.94 7.28 132.77 0.97 8.91 16 23 C -0.16 -3.03 9.73 22.48 0.22 -2.81 16 24 C -0.05 -0.50 10.17 22.45 0.23 -0.27 16 25 C -0.16 -1.20 10.11 22.38 0.23 -0.97 16 26 C 0.12 1.46 11.18 84.66 0.95 2.40 16 27 N -0.52 -11.13 6.97 -192.80 -1.34 -12.48 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.78 7.13 -2.39 -0.02 1.76 16 31 H 0.08 2.98 6.52 -2.39 -0.02 2.96 16 32 H 0.09 2.52 6.87 -2.38 -0.02 2.50 16 33 H 0.40 14.77 7.49 -92.72 -0.69 14.07 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 36 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 38 H 0.23 4.93 7.50 -2.91 -0.02 4.91 16 39 H 0.14 2.63 7.89 -2.91 -0.02 2.61 16 40 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 42 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -75.39 354.97 4.29 -71.09 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.36 Total: 24.18 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.69 Total: 8.97 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -4.72 Total: -118.44 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.06 Total: -30.27 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -75.39 4.29 -71.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.363 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds