Wall clock time and date at job start Tue Mar 31 2020 11:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47284 * 2 1 4 4 C 1.52996 * 109.47208 * 119.99790 * 2 1 3 5 5 C 1.53002 * 109.47340 * 174.99862 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.29949 * 126.28516 * 90.02698 * 6 5 4 8 8 O 1.21303 * 110.24828 * 179.97438 * 7 6 5 9 9 C 1.33639 * 109.81167 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.55166 * 179.97438 * 9 8 7 11 11 S 1.81392 * 109.46930 * 269.97521 * 10 9 8 12 12 O 1.42100 * 109.47114 * 296.38388 * 11 10 9 13 13 C 1.81402 * 102.99794 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46923 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47069 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99548 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00306 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99884 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46930 * 60.00019 * 20 18 16 22 22 H 1.48503 * 109.47224 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47513 * 299.99839 * 20 18 16 24 24 N 1.31134 * 106.89726 * 359.76539 * 9 8 7 25 25 H 1.09000 * 109.47001 * 300.00374 * 1 2 3 26 26 H 1.09002 * 109.46911 * 59.99923 * 1 2 3 27 27 H 1.08997 * 109.46828 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47609 * 240.00059 * 2 1 3 29 29 H 1.08998 * 109.47276 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46983 * 300.00389 * 3 2 1 31 31 H 1.09009 * 109.46833 * 60.00019 * 3 2 1 32 32 H 1.09004 * 109.46785 * 55.00169 * 4 2 1 33 33 H 1.09004 * 109.47694 * 295.00268 * 4 2 1 34 34 H 1.09000 * 109.46497 * 60.00561 * 5 4 2 35 35 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 36 36 H 1.09002 * 109.46756 * 29.97587 * 10 9 8 37 37 H 1.09001 * 109.47141 * 149.96983 * 10 9 8 38 38 H 1.09008 * 109.46699 * 299.99751 * 13 11 10 39 39 H 1.08990 * 109.47505 * 59.99826 * 13 11 10 40 40 H 1.09003 * 109.46674 * 299.99726 * 14 13 11 41 41 H 1.08998 * 109.47156 * 59.99303 * 14 13 11 42 42 H 1.09003 * 109.47234 * 299.99399 * 15 14 13 43 43 H 1.08998 * 109.47760 * 59.99689 * 15 14 13 44 44 H 0.96998 * 119.99842 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0671 -1.5420 2.4182 7 7 4.2377 -2.8234 2.5501 8 8 4.6541 -3.0795 3.6603 9 6 4.7923 -1.9515 4.3635 10 6 5.2812 -1.8337 5.7842 11 16 3.8708 -1.9417 6.9198 12 8 3.0004 -0.8402 6.7001 13 6 4.6475 -1.7815 8.5513 14 6 3.5723 -1.8546 9.6374 15 6 4.2275 -1.7201 11.0135 16 6 3.1685 -1.7915 12.0832 17 1 2.1317 -1.9195 11.8090 18 6 3.5230 -1.6933 13.4120 19 7 4.7855 -1.5380 13.7459 20 14 2.2102 -1.7811 14.7379 21 1 1.5045 -3.0848 14.6502 22 1 2.8462 -1.6519 16.0736 23 1 1.2362 -0.6770 14.5441 24 7 4.4254 -0.9663 3.5796 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1676 1.1421 35 1 3.8532 -1.3940 0.3003 36 1 5.9808 -2.6423 5.9958 37 1 5.7826 -0.8752 5.9176 38 1 5.3633 -2.5912 8.6940 39 1 5.1645 -0.8241 8.6152 40 1 2.8563 -1.0452 9.4948 41 1 3.0557 -2.8122 9.5734 42 1 4.9433 -2.5298 11.1558 43 1 4.7445 -0.7627 11.0778 44 1 5.0350 -1.4693 14.6808 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078715238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:18 Heat of formation + Delta-G solvation = -6.093890 kcal Electronic energy + Delta-G solvation = -22843.228508 eV Core-core repulsion = 19310.685535 eV Total energy + Delta-G solvation = -3532.542974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.76647 -37.68434 -35.97112 -35.69921 -34.51620 -33.97814 -32.08443 -30.96681 -29.17842 -27.57236 -27.51997 -25.31730 -23.78189 -23.34251 -21.51486 -20.37677 -20.34460 -18.42070 -17.77139 -17.38954 -16.36862 -15.89633 -15.47972 -15.30568 -15.24105 -14.87441 -14.45620 -14.41255 -14.05100 -14.01229 -13.48616 -13.15529 -12.72608 -12.66427 -12.43935 -12.38152 -12.18830 -12.02518 -11.82918 -11.72723 -11.53763 -11.22444 -11.21081 -11.01424 -10.93463 -10.89264 -10.85299 -10.77898 -10.48609 -9.98058 -9.85376 -9.34334 -9.13036 -8.38859 -8.23283 -6.03979 -4.06853 0.72169 1.46793 2.11855 2.46641 2.60226 3.32058 3.36350 3.37912 3.39187 3.75262 3.77794 4.43049 4.43376 4.47469 4.51424 4.66502 4.79235 4.97587 5.03410 5.12239 5.26882 5.30233 5.31285 5.32277 5.35624 5.46692 5.47762 5.54438 5.59942 5.66605 5.67631 5.79575 5.83773 5.98551 6.03818 6.08082 6.41749 6.60399 6.96668 7.60551 7.72406 7.94695 7.97719 8.36084 8.99663 9.57625 11.07115 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.002117 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.223623 B =13222.329699 C =14053.821289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.112 4.112 5 C -0.029 4.029 6 C 0.173 3.827 7 N -0.385 5.385 8 O 0.081 5.919 9 C 0.206 3.794 10 C -0.378 4.378 11 S 1.252 4.748 12 O -0.822 6.822 13 C -0.431 4.431 14 C -0.095 4.095 15 C 0.028 3.972 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.473 5.473 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.154 0.846 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.015 0.985 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -2.694 -26.941 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.151 4.151 5 C -0.068 4.068 6 C -0.100 4.100 7 N -0.093 5.093 8 O 0.022 5.978 9 C -0.014 4.014 10 C -0.510 4.510 11 S 1.447 4.553 12 O -0.817 6.817 13 C -0.571 4.571 14 C -0.134 4.134 15 C -0.011 4.011 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.721 3.279 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.208 5.208 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.034 0.966 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.521 -2.909 -27.843 28.036 hybrid contribution 0.726 1.916 1.323 2.439 sum -0.795 -0.993 -26.520 26.550 Atomic orbital electron populations 1.21838 0.94864 1.01883 1.01985 1.21092 0.96076 0.96432 0.97656 1.21930 1.01168 0.95829 1.02028 1.21659 0.92847 1.01467 0.99092 1.20080 0.96644 1.00191 0.89909 1.25877 1.00090 0.87313 0.96695 1.74611 1.17995 1.17872 0.98830 1.85288 1.60101 1.34779 1.17657 1.27542 0.96337 0.80610 0.96962 1.26648 1.19018 1.10666 0.94706 1.71340 0.82875 1.14500 0.86602 1.93165 1.49197 1.57166 1.82198 1.27684 1.09006 1.07845 1.12543 1.21351 0.95465 1.01294 0.95279 1.19091 0.95958 0.97386 0.88655 1.21223 0.93810 1.50114 0.91132 0.92573 1.25023 0.95374 0.95209 0.98832 1.69947 1.15957 1.49968 1.17596 0.86635 0.81777 0.78703 0.80772 1.20111 1.21288 1.20240 1.71970 1.17399 1.29930 1.01533 0.92451 0.92562 0.92613 0.91009 0.92436 0.92647 0.92352 0.91417 0.90910 0.88468 0.89121 0.82847 0.85291 0.86184 0.89456 0.92663 0.91926 0.96111 0.96647 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 2 C -0.09 -0.65 2.92 -90.62 -0.26 -0.91 16 3 C -0.15 -1.02 8.95 37.16 0.33 -0.69 16 4 C -0.11 -0.98 4.66 -26.73 -0.12 -1.10 16 5 C -0.03 -0.27 5.60 -27.88 -0.16 -0.42 16 6 C 0.17 2.16 7.47 -156.37 -1.17 0.99 16 7 N -0.38 -4.89 12.16 30.90 0.38 -4.51 16 8 O 0.08 0.94 11.31 18.11 0.20 1.14 16 9 C 0.21 2.47 7.77 -13.05 -0.10 2.37 16 10 C -0.38 -3.46 6.55 36.01 0.24 -3.22 16 11 S 1.25 14.45 13.14 -107.50 -1.41 13.03 16 12 O -0.82 -15.09 18.14 -35.23 -0.64 -15.73 16 13 C -0.43 -5.96 5.92 37.16 0.22 -5.74 16 14 C -0.09 -1.81 5.16 -26.73 -0.14 -1.94 16 15 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 16 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 N -0.47 -6.70 11.55 -9.87 -0.11 -6.82 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.37 6.56 -51.93 -0.34 0.02 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.82 6.56 -51.93 -0.34 0.48 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.15 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.13 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.12 1.29 8.14 -51.92 -0.42 0.87 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -36.92 381.77 -8.90 -45.81 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -7.41 Total: -5.22 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -1.37 Total: -24.15 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.00 Total: -37.05 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.43 Total: -14.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 14.45 SS G_CDS: -1.41 Total: 13.03 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.92 -8.90 -45.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078715238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.721 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds