Wall clock time and date at job start Tue Mar 31 2020 11:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47284 * 2 1 4 4 C 1.52996 * 109.47208 * 119.99790 * 2 1 3 5 5 C 1.53002 * 109.47340 * 174.99862 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.29949 * 126.28516 * 90.02698 * 6 5 4 8 8 O 1.21303 * 110.24828 * 179.97438 * 7 6 5 9 9 C 1.33639 * 109.81167 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.55166 * 179.97438 * 9 8 7 11 11 S 1.81392 * 109.46930 * 269.97521 * 10 9 8 12 12 O 1.42100 * 109.47114 * 296.38388 * 11 10 9 13 13 C 1.81402 * 102.99794 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46923 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47069 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99548 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00306 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99884 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46930 * 60.00019 * 20 18 16 22 22 H 1.48503 * 109.47224 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47513 * 299.99839 * 20 18 16 24 24 N 1.31134 * 106.89726 * 359.76539 * 9 8 7 25 25 H 1.09000 * 109.47001 * 300.00374 * 1 2 3 26 26 H 1.09002 * 109.46911 * 59.99923 * 1 2 3 27 27 H 1.08997 * 109.46828 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47609 * 240.00059 * 2 1 3 29 29 H 1.08998 * 109.47276 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46983 * 300.00389 * 3 2 1 31 31 H 1.09009 * 109.46833 * 60.00019 * 3 2 1 32 32 H 1.09004 * 109.46785 * 55.00169 * 4 2 1 33 33 H 1.09004 * 109.47694 * 295.00268 * 4 2 1 34 34 H 1.09000 * 109.46497 * 60.00561 * 5 4 2 35 35 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 36 36 H 1.09002 * 109.46756 * 29.97587 * 10 9 8 37 37 H 1.09001 * 109.47141 * 149.96983 * 10 9 8 38 38 H 1.09008 * 109.46699 * 299.99751 * 13 11 10 39 39 H 1.08990 * 109.47505 * 59.99826 * 13 11 10 40 40 H 1.09003 * 109.46674 * 299.99726 * 14 13 11 41 41 H 1.08998 * 109.47156 * 59.99303 * 14 13 11 42 42 H 1.09003 * 109.47234 * 299.99399 * 15 14 13 43 43 H 1.08998 * 109.47760 * 59.99689 * 15 14 13 44 44 H 0.96998 * 119.99842 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0671 -1.5420 2.4182 7 7 4.2377 -2.8234 2.5501 8 8 4.6541 -3.0795 3.6603 9 6 4.7923 -1.9515 4.3635 10 6 5.2812 -1.8337 5.7842 11 16 3.8708 -1.9417 6.9198 12 8 3.0004 -0.8402 6.7001 13 6 4.6475 -1.7815 8.5513 14 6 3.5723 -1.8546 9.6374 15 6 4.2275 -1.7201 11.0135 16 6 3.1685 -1.7915 12.0832 17 1 2.1317 -1.9195 11.8090 18 6 3.5230 -1.6933 13.4120 19 7 4.7855 -1.5380 13.7459 20 14 2.2102 -1.7811 14.7379 21 1 1.5045 -3.0848 14.6502 22 1 2.8462 -1.6519 16.0736 23 1 1.2362 -0.6770 14.5441 24 7 4.4254 -0.9663 3.5796 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1676 1.1421 35 1 3.8532 -1.3940 0.3003 36 1 5.9808 -2.6423 5.9958 37 1 5.7826 -0.8752 5.9176 38 1 5.3633 -2.5912 8.6940 39 1 5.1645 -0.8241 8.6152 40 1 2.8563 -1.0452 9.4948 41 1 3.0557 -2.8122 9.5734 42 1 4.9433 -2.5298 11.1558 43 1 4.7445 -0.7627 11.0778 44 1 5.0350 -1.4693 14.6808 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078715238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:17 Heat of formation + Delta-G solvation = -32.081037 kcal Electronic energy + Delta-G solvation = -22844.355396 eV Core-core repulsion = 19310.685535 eV Total energy + Delta-G solvation = -3533.669861 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.70980 -38.37552 -37.00713 -36.79209 -36.28003 -34.84990 -34.00194 -31.69898 -30.08973 -29.33263 -28.05884 -26.10648 -25.42932 -24.43117 -22.52766 -21.90025 -20.96897 -19.36834 -18.84213 -18.48784 -18.24215 -16.77051 -16.66664 -16.33971 -16.21377 -16.12193 -15.84221 -15.18189 -15.03679 -14.91321 -14.34070 -14.30961 -14.01456 -13.84358 -13.60829 -13.32979 -13.26516 -13.04059 -12.95425 -12.68701 -12.66675 -12.51294 -12.47834 -12.41407 -12.13378 -12.02973 -11.76138 -11.60294 -11.56169 -11.53351 -11.32331 -11.19138 -10.62254 -10.53482 -9.32657 -8.19246 -6.29836 -0.24230 0.51282 1.16942 1.41253 1.43689 1.51472 1.53110 1.67446 2.41969 2.55150 2.75004 2.91642 3.13933 3.68200 3.83456 3.86558 3.99356 4.08297 4.11637 4.22669 4.27878 4.33932 4.48169 4.60162 4.66128 4.70315 4.74367 4.80822 4.86400 4.90111 4.93114 4.99726 5.04856 5.06424 5.20759 5.22460 5.26295 5.40984 5.46601 5.52925 5.74436 5.86852 6.25796 6.87081 7.05353 7.39226 8.91700 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.002117 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.223623 B =13222.329699 C =14053.821289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.106 4.106 5 C -0.029 4.029 6 C 0.165 3.835 7 N -0.396 5.396 8 O 0.090 5.910 9 C 0.204 3.796 10 C -0.368 4.368 11 S 1.315 4.685 12 O -0.896 6.896 13 C -0.433 4.433 14 C -0.092 4.092 15 C 0.027 3.973 16 C -0.548 4.548 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.961 3.039 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.274 1.274 24 N -0.510 5.510 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.210 0.790 37 H 0.131 0.869 38 H 0.159 0.841 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.086 0.914 42 H 0.013 0.987 43 H -0.017 1.017 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -4.042 -28.202 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.145 4.145 5 C -0.068 4.068 6 C -0.107 4.107 7 N -0.105 5.105 8 O 0.031 5.969 9 C -0.016 4.016 10 C -0.503 4.503 11 S 1.512 4.488 12 O -0.891 6.891 13 C -0.572 4.572 14 C -0.130 4.130 15 C -0.011 4.011 16 C -0.586 4.586 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.786 3.214 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.199 1.199 24 N -0.246 5.246 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.227 0.773 37 H 0.149 0.851 38 H 0.177 0.823 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.031 0.969 43 H 0.001 0.999 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.373 -4.260 -29.082 29.425 hybrid contribution 0.750 2.318 1.633 2.933 sum -0.623 -1.942 -27.449 27.525 Atomic orbital electron populations 1.21849 0.94771 1.02011 1.02017 1.21082 0.96128 0.96410 0.97161 1.21934 1.01429 0.95682 1.01922 1.21597 0.92763 1.01036 0.99100 1.20247 0.96589 1.00512 0.89436 1.26408 0.99740 0.87368 0.97214 1.74585 1.18504 1.18029 0.99349 1.85268 1.59813 1.34413 1.17386 1.27921 0.95685 0.80402 0.97629 1.26661 1.18224 1.13278 0.92132 1.70583 0.81802 1.11656 0.84733 1.93050 1.53471 1.59296 1.83280 1.27645 1.08143 1.08805 1.12565 1.21141 0.96300 1.01645 0.93963 1.19023 0.95299 0.95183 0.91637 1.21739 0.94700 1.49808 0.92395 0.92296 1.25942 0.97617 0.94816 1.01401 1.70069 1.17932 1.50938 1.18157 0.85559 0.78948 0.79230 0.77686 1.18622 1.20826 1.19910 1.71983 1.18565 1.31342 1.02689 0.93561 0.91394 0.92459 0.89429 0.92044 0.91495 0.93709 0.91858 0.93313 0.87934 0.87158 0.77259 0.85066 0.82320 0.90717 0.95108 0.89535 0.96876 0.99907 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.09 -1.13 2.92 -10.79 -0.03 -1.16 16 3 C -0.15 -1.91 8.95 71.98 0.64 -1.27 16 4 C -0.11 -1.82 4.66 30.59 0.14 -1.68 16 5 C -0.03 -0.51 5.60 29.85 0.17 -0.34 16 6 C 0.17 4.00 7.47 138.47 1.03 5.03 16 7 N -0.40 -9.54 12.16 -60.32 -0.73 -10.27 16 8 O 0.09 1.92 11.31 74.86 0.85 2.77 16 9 C 0.20 4.51 7.77 88.38 0.69 5.20 16 10 C -0.37 -5.62 6.55 71.24 0.47 -5.15 16 11 S 1.31 28.23 13.14 -56.49 -0.74 27.49 16 12 O -0.90 -33.10 18.14 -148.98 -2.70 -35.81 16 13 C -0.43 -11.33 5.92 71.98 0.43 -10.90 16 14 C -0.09 -3.48 5.16 30.59 0.16 -3.33 16 15 C 0.03 1.36 4.97 29.85 0.15 1.51 16 16 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 20 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 N -0.51 -14.08 11.55 -303.19 -3.50 -17.58 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.71 6.56 -2.39 -0.02 0.70 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.65 6.56 -2.39 -0.02 1.63 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.21 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.13 2.15 8.14 -2.39 -0.02 2.14 16 38 H 0.16 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.07 2.16 8.14 -2.40 -0.02 2.14 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 44 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -83.08 381.77 1.64 -81.44 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 0.97 Total: 4.91 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 5.20 Total: -43.44 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.95 Total: -83.34 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.86 Total: -33.04 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 28.23 SS G_CDS: -0.74 Total: 27.49 kcal Total: -83.08 1.64 -81.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078715238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.357 kcal (2) G-P(sol) polarization free energy of solvation -83.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds