Wall clock time and date at job start Tue Mar 31 2020 10:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47136 * 2 1 4 4 N 1.30635 * 125.84668 * 305.02392 * 3 2 1 5 5 C 1.34031 * 109.78796 * 179.97438 * 4 3 2 6 6 C 1.48270 * 125.65597 * 180.26805 * 5 4 3 7 7 C 1.39530 * 119.96614 * 359.43245 * 6 5 4 8 8 C 1.37641 * 120.02666 * 179.76911 * 7 6 5 9 9 C 1.39784 * 119.96603 * 0.50707 * 8 7 6 10 10 C 1.47586 * 120.02623 * 179.76398 * 9 8 7 11 11 O 1.21619 * 120.00021 * 217.94533 * 10 9 8 12 12 N 1.34778 * 120.00196 * 37.95697 * 10 9 8 13 13 C 1.36838 * 120.00001 * 180.94185 * 12 10 9 14 14 H 1.07996 * 120.00438 * 350.95787 * 13 12 10 15 15 C 1.39060 * 119.99792 * 170.95726 * 13 12 10 16 16 N 1.31357 * 120.00004 * 24.40689 * 15 13 12 17 17 Si 1.86799 * 120.00008 * 204.40541 * 15 13 12 18 18 H 1.48502 * 109.47149 * 90.00155 * 17 15 13 19 19 H 1.48500 * 109.47139 * 210.00158 * 17 15 13 20 20 H 1.48499 * 109.47349 * 330.00146 * 17 15 13 21 21 C 1.46498 * 119.99735 * 0.93701 * 12 10 9 22 22 C 1.53003 * 109.47083 * 260.34497 * 21 12 10 23 23 C 1.39789 * 119.94138 * 359.74821 * 9 8 7 24 24 C 1.37624 * 119.96601 * 359.97438 * 23 9 8 25 25 N 1.31558 * 108.68635 * 359.97438 * 5 4 3 26 26 N 1.34580 * 125.84753 * 124.99717 * 3 2 1 27 27 H 0.96994 * 126.74009 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.47170 * 300.00108 * 1 2 3 29 29 H 1.08997 * 109.46901 * 59.99992 * 1 2 3 30 30 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47013 * 239.99367 * 2 1 3 32 32 H 1.09002 * 109.46681 * 119.99603 * 2 1 3 33 33 H 1.07997 * 119.98701 * 0.02562 * 7 6 5 34 34 H 1.08002 * 120.01488 * 180.23325 * 8 7 6 35 35 H 0.97008 * 120.00000 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47511 * 20.34201 * 21 12 10 37 37 H 1.08994 * 109.47267 * 140.34277 * 21 12 10 38 38 H 1.09004 * 109.47256 * 41.14007 * 22 21 12 39 39 H 1.09005 * 109.47021 * 161.14228 * 22 21 12 40 40 H 1.08998 * 109.47245 * 281.13800 * 22 21 12 41 41 H 1.07998 * 120.01498 * 179.97438 * 23 9 8 42 42 H 1.08004 * 119.98507 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.7144 2.3446 -0.8672 5 6 2.3439 3.4882 -0.5632 6 6 2.2303 4.7628 -1.3122 7 6 1.4210 4.8348 -2.4465 8 6 1.3109 6.0187 -3.1399 9 6 2.0186 7.1461 -2.7134 10 6 1.9056 8.4148 -3.4590 11 8 2.8825 9.1247 -3.6027 12 7 0.7197 8.7867 -3.9804 13 6 0.6192 9.9535 -4.6882 14 1 1.4470 10.6468 -4.7068 15 6 -0.5489 10.2465 -5.3834 16 7 -1.6874 9.7069 -5.0118 17 14 -0.4990 11.4076 -6.8459 18 1 -0.2501 10.6305 -8.0867 19 1 -1.7984 12.1176 -6.9588 20 1 0.5911 12.3977 -6.6550 21 6 -0.4617 7.9417 -3.7895 22 6 -0.6988 7.1046 -5.0481 23 6 2.8332 7.0710 -1.5799 24 6 2.9370 5.8875 -0.8852 25 7 3.0744 3.2939 0.5135 26 7 2.8850 1.9552 0.8936 27 1 3.2889 1.5046 1.6516 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8775 3.9625 -2.7781 34 1 0.6814 6.0752 -4.0157 35 1 -2.5022 9.9110 -5.4971 36 1 -0.3016 7.2802 -2.9381 37 1 -1.3319 8.5707 -3.6022 38 1 0.2559 6.7394 -5.4267 39 1 -1.3413 6.2581 -4.8057 40 1 -1.1798 7.7198 -5.8084 41 1 3.3809 7.9412 -1.2495 42 1 3.5659 5.8292 -0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123485709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:44 Heat of formation + Delta-G solvation = 99.011156 kcal Electronic energy + Delta-G solvation = -25339.249892 eV Core-core repulsion = 21708.113415 eV Total energy + Delta-G solvation = -3631.136477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21642 -39.51776 -37.55178 -35.23004 -34.59645 -33.03441 -32.12866 -30.98254 -30.54821 -29.71456 -29.20371 -25.58086 -24.63895 -23.80862 -22.29843 -22.02010 -21.00704 -20.46354 -19.31614 -18.11314 -17.01616 -16.42653 -16.09255 -15.92310 -14.99169 -14.85720 -14.55368 -14.31586 -14.21862 -13.96023 -13.40254 -13.33192 -13.15134 -12.72706 -12.49270 -12.42367 -12.19585 -11.96485 -11.84558 -11.57766 -11.50394 -11.28350 -11.07922 -10.89167 -10.59666 -10.45338 -10.35762 -10.19144 -10.07248 -9.93635 -9.74115 -9.01294 -8.53174 -8.49809 -8.07101 -7.81448 -6.31076 -3.83780 0.91153 1.67281 1.82696 2.42248 2.88793 3.15293 3.23811 3.29157 3.69074 3.85008 4.05937 4.32034 4.38770 4.44933 4.75446 4.85076 4.89427 5.07715 5.10934 5.35204 5.39917 5.40869 5.56206 5.57838 5.80508 5.86744 5.92538 6.01326 6.12362 6.18128 6.28622 6.42566 6.48990 6.57193 6.65721 6.72724 6.81029 6.88952 6.96604 7.25931 7.30755 7.41654 7.68323 7.95427 8.05859 8.50250 9.11376 9.38152 9.95757 10.52289 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.002927 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.518432 B = 9563.390230 C =10443.272389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.283 3.717 4 N -0.526 5.526 5 C 0.284 3.716 6 C -0.031 4.031 7 C -0.081 4.081 8 C -0.122 4.122 9 C -0.070 4.070 10 C 0.464 3.536 11 O -0.593 6.593 12 N -0.423 5.423 13 C -0.300 4.300 14 H 0.108 0.892 15 C 0.035 3.965 16 N -0.858 5.858 17 Si 0.923 3.077 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.268 1.268 21 C 0.081 3.919 22 C -0.155 4.155 23 C -0.088 4.088 24 C -0.090 4.090 25 N -0.310 5.310 26 N -0.487 5.487 27 H 0.438 0.562 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.269 0.731 36 H 0.046 0.954 37 H 0.138 0.862 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 -19.460 9.513 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C 0.004 3.996 4 N -0.254 5.254 5 C 0.005 3.995 6 C -0.034 4.034 7 C -0.101 4.101 8 C -0.141 4.141 9 C -0.074 4.074 10 C 0.254 3.746 11 O -0.480 6.480 12 N -0.138 5.138 13 C -0.427 4.427 14 H 0.126 0.874 15 C -0.169 4.169 16 N -0.498 5.498 17 Si 0.749 3.251 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.042 4.042 22 C -0.213 4.213 23 C -0.107 4.107 24 C -0.111 4.111 25 N -0.139 5.139 26 N -0.205 5.205 27 H 0.283 0.717 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.170 0.830 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.155 0.845 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.149 0.851 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.493 -18.548 9.404 20.849 hybrid contribution 0.168 -0.143 -0.048 0.226 sum 1.661 -18.690 9.355 20.967 Atomic orbital electron populations 1.21701 0.92627 1.02475 1.03578 1.20165 0.97866 0.86022 1.04247 1.24408 0.90533 0.97468 0.87163 1.70432 1.27932 0.99301 1.27772 1.22411 0.92237 0.93361 0.91469 1.17475 1.01646 0.88159 0.96145 1.21055 0.97315 0.97993 0.93714 1.22189 0.98875 0.91563 1.01427 1.20453 0.96226 0.95165 0.95589 1.17826 0.84270 0.86748 0.85759 1.90616 1.37124 1.55687 1.64572 1.43810 1.06538 1.19327 1.44132 1.19783 1.01697 0.97917 1.23352 0.87439 1.25261 0.94269 0.98529 0.98841 1.69799 0.98503 1.43838 1.37622 0.85966 0.77760 0.79811 0.81517 1.20196 1.21002 1.19237 1.22427 0.92142 0.94309 0.95291 1.22249 0.99563 0.98822 1.00659 1.21072 0.97847 0.97605 0.94163 1.20976 0.98699 0.91601 0.99784 1.78273 1.25396 0.93119 1.17092 1.48019 1.37587 1.09083 1.25818 0.71652 0.92532 0.90777 0.91422 0.88237 0.89777 0.84949 0.82963 0.91936 0.93561 0.84539 0.94195 0.93839 0.90600 0.85052 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.87 37.16 0.37 -0.50 16 2 C -0.04 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.28 2.91 7.50 -155.73 -1.17 1.74 16 4 N -0.53 -7.38 10.77 -8.57 -0.09 -7.47 16 5 C 0.28 4.45 7.77 -156.59 -1.22 3.23 16 6 C -0.03 -0.52 5.88 -104.81 -0.62 -1.13 16 7 C -0.08 -1.34 9.67 -39.32 -0.38 -1.72 16 8 C -0.12 -2.27 7.40 -39.22 -0.29 -2.56 16 9 C -0.07 -1.48 5.20 -104.93 -0.55 -2.02 16 10 C 0.46 11.85 7.30 -12.45 -0.09 11.76 16 11 O -0.59 -17.07 16.47 5.26 0.09 -16.98 16 12 N -0.42 -10.84 2.64 -115.98 -0.31 -11.14 16 13 C -0.30 -8.18 9.40 -15.01 -0.14 -8.33 16 14 H 0.11 3.12 7.30 -52.49 -0.38 2.73 16 15 C 0.03 0.87 4.80 -17.45 -0.08 0.79 16 16 N -0.86 -21.09 8.31 55.50 0.46 -20.63 16 17 Si 0.92 20.10 29.62 -169.99 -5.03 15.07 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 C 0.08 1.82 4.88 -4.04 -0.02 1.80 16 22 C -0.16 -3.14 8.16 37.16 0.30 -2.83 16 23 C -0.09 -1.66 9.61 -39.23 -0.38 -2.03 16 24 C -0.09 -1.51 9.66 -39.33 -0.38 -1.89 16 25 N -0.31 -4.46 12.41 32.09 0.40 -4.07 16 26 N -0.49 -4.90 7.44 32.61 0.24 -4.66 16 27 H 0.44 2.58 8.96 -182.35 -1.63 0.95 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.13 1.99 7.82 -52.49 -0.41 1.58 16 34 H 0.15 2.81 3.18 -52.49 -0.17 2.64 16 35 H 0.27 6.24 8.31 -40.82 -0.34 5.91 16 36 H 0.05 0.95 5.09 -51.93 -0.26 0.69 16 37 H 0.14 3.32 5.47 -51.93 -0.28 3.04 16 38 H 0.04 0.80 6.76 -51.93 -0.35 0.45 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.67 6.21 -51.93 -0.32 1.35 16 41 H 0.13 2.44 8.04 -52.49 -0.42 2.02 16 42 H 0.13 1.90 7.82 -52.48 -0.41 1.49 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -32.42 346.44 -10.16 -42.58 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.32 Total: 6.20 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -4.82 Total: -4.12 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.70 Total: -47.97 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.09 Total: -16.98 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.42 -10.16 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123485709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.595 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds