Wall clock time and date at job start Tue Mar 31 2020 10:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47136 * 2 1 4 4 N 1.30635 * 125.84668 * 305.02392 * 3 2 1 5 5 C 1.34031 * 109.78796 * 179.97438 * 4 3 2 6 6 C 1.48270 * 125.65597 * 180.26805 * 5 4 3 7 7 C 1.39530 * 119.96614 * 359.43245 * 6 5 4 8 8 C 1.37641 * 120.02666 * 179.76911 * 7 6 5 9 9 C 1.39784 * 119.96603 * 0.50707 * 8 7 6 10 10 C 1.47586 * 120.02623 * 179.76398 * 9 8 7 11 11 O 1.21619 * 120.00021 * 217.94533 * 10 9 8 12 12 N 1.34778 * 120.00196 * 37.95697 * 10 9 8 13 13 C 1.36838 * 120.00001 * 180.94185 * 12 10 9 14 14 H 1.07996 * 120.00438 * 350.95787 * 13 12 10 15 15 C 1.39060 * 119.99792 * 170.95726 * 13 12 10 16 16 N 1.31357 * 120.00004 * 24.40689 * 15 13 12 17 17 Si 1.86799 * 120.00008 * 204.40541 * 15 13 12 18 18 H 1.48502 * 109.47149 * 90.00155 * 17 15 13 19 19 H 1.48500 * 109.47139 * 210.00158 * 17 15 13 20 20 H 1.48499 * 109.47349 * 330.00146 * 17 15 13 21 21 C 1.46498 * 119.99735 * 0.93701 * 12 10 9 22 22 C 1.53003 * 109.47083 * 260.34497 * 21 12 10 23 23 C 1.39789 * 119.94138 * 359.74821 * 9 8 7 24 24 C 1.37624 * 119.96601 * 359.97438 * 23 9 8 25 25 N 1.31558 * 108.68635 * 359.97438 * 5 4 3 26 26 N 1.34580 * 125.84753 * 124.99717 * 3 2 1 27 27 H 0.96994 * 126.74009 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.47170 * 300.00108 * 1 2 3 29 29 H 1.08997 * 109.46901 * 59.99992 * 1 2 3 30 30 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47013 * 239.99367 * 2 1 3 32 32 H 1.09002 * 109.46681 * 119.99603 * 2 1 3 33 33 H 1.07997 * 119.98701 * 0.02562 * 7 6 5 34 34 H 1.08002 * 120.01488 * 180.23325 * 8 7 6 35 35 H 0.97008 * 120.00000 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47511 * 20.34201 * 21 12 10 37 37 H 1.08994 * 109.47267 * 140.34277 * 21 12 10 38 38 H 1.09004 * 109.47256 * 41.14007 * 22 21 12 39 39 H 1.09005 * 109.47021 * 161.14228 * 22 21 12 40 40 H 1.08998 * 109.47245 * 281.13800 * 22 21 12 41 41 H 1.07998 * 120.01498 * 179.97438 * 23 9 8 42 42 H 1.08004 * 119.98507 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.7144 2.3446 -0.8672 5 6 2.3439 3.4882 -0.5632 6 6 2.2303 4.7628 -1.3122 7 6 1.4210 4.8348 -2.4465 8 6 1.3109 6.0187 -3.1399 9 6 2.0186 7.1461 -2.7134 10 6 1.9056 8.4148 -3.4590 11 8 2.8825 9.1247 -3.6027 12 7 0.7197 8.7867 -3.9804 13 6 0.6192 9.9535 -4.6882 14 1 1.4470 10.6468 -4.7068 15 6 -0.5489 10.2465 -5.3834 16 7 -1.6874 9.7069 -5.0118 17 14 -0.4990 11.4076 -6.8459 18 1 -0.2501 10.6305 -8.0867 19 1 -1.7984 12.1176 -6.9588 20 1 0.5911 12.3977 -6.6550 21 6 -0.4617 7.9417 -3.7895 22 6 -0.6988 7.1046 -5.0481 23 6 2.8332 7.0710 -1.5799 24 6 2.9370 5.8875 -0.8852 25 7 3.0744 3.2939 0.5135 26 7 2.8850 1.9552 0.8936 27 1 3.2889 1.5046 1.6516 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8775 3.9625 -2.7781 34 1 0.6814 6.0752 -4.0157 35 1 -2.5022 9.9110 -5.4971 36 1 -0.3016 7.2802 -2.9381 37 1 -1.3319 8.5707 -3.6022 38 1 0.2559 6.7394 -5.4267 39 1 -1.3413 6.2581 -4.8057 40 1 -1.1798 7.7198 -5.8084 41 1 3.3809 7.9412 -1.2495 42 1 3.5659 5.8292 -0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123485709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:44 Heat of formation + Delta-G solvation = 79.887712 kcal Electronic energy + Delta-G solvation = -25340.079147 eV Core-core repulsion = 21708.113415 eV Total energy + Delta-G solvation = -3631.965732 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.16948 -41.21184 -39.18000 -37.19610 -35.31482 -34.21357 -33.76384 -32.37185 -31.93844 -31.25155 -30.46915 -27.39223 -25.31302 -25.27335 -23.92461 -23.48321 -22.17935 -21.47331 -20.96534 -19.07277 -18.91582 -18.18478 -17.48522 -16.78879 -16.64304 -16.22779 -16.06351 -15.71340 -15.37640 -15.01966 -14.99686 -14.90409 -14.40420 -14.12180 -13.91746 -13.68166 -13.57301 -13.35650 -12.97319 -12.94890 -12.82135 -12.65385 -12.43767 -12.16767 -12.10863 -12.01078 -11.92039 -11.72410 -11.37966 -11.13959 -10.92971 -10.78887 -10.48148 -9.95269 -9.76512 -9.48983 -8.24260 -5.88825 -0.42284 0.40982 0.67802 1.35786 1.43611 1.53876 1.63347 1.71485 2.14853 2.26580 2.78745 2.81991 3.05892 3.12356 3.43456 3.70890 3.88591 3.97633 4.01032 4.31722 4.34010 4.36491 4.46776 4.57819 4.64209 4.76419 4.80680 4.83664 4.97441 5.02463 5.06511 5.09093 5.11474 5.14968 5.36826 5.39659 5.42408 5.46399 5.49139 5.66258 5.73305 5.84510 6.09640 6.17349 6.54443 6.99165 7.12389 7.43275 8.00471 8.56662 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.002927 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.518432 B = 9563.390230 C =10443.272389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C 0.293 3.707 4 N -0.553 5.553 5 C 0.261 3.739 6 C -0.020 4.020 7 C -0.072 4.072 8 C -0.116 4.116 9 C -0.099 4.099 10 C 0.451 3.549 11 O -0.643 6.643 12 N -0.430 5.430 13 C -0.350 4.350 14 H 0.074 0.926 15 C 0.016 3.984 16 N -0.857 5.857 17 Si 0.982 3.018 18 H -0.270 1.270 19 H -0.266 1.266 20 H -0.279 1.279 21 C 0.084 3.916 22 C -0.145 4.145 23 C -0.091 4.091 24 C -0.083 4.083 25 N -0.328 5.328 26 N -0.471 5.471 27 H 0.458 0.542 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.278 0.722 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.125 0.875 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 -23.029 10.348 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C 0.015 3.985 4 N -0.282 5.282 5 C -0.018 4.018 6 C -0.023 4.023 7 C -0.092 4.092 8 C -0.135 4.135 9 C -0.103 4.103 10 C 0.242 3.758 11 O -0.534 6.534 12 N -0.145 5.145 13 C -0.478 4.478 14 H 0.092 0.908 15 C -0.188 4.188 16 N -0.495 5.495 17 Si 0.805 3.195 18 H -0.196 1.196 19 H -0.191 1.191 20 H -0.204 1.204 21 C -0.038 4.038 22 C -0.203 4.203 23 C -0.110 4.110 24 C -0.103 4.103 25 N -0.157 5.157 26 N -0.191 5.191 27 H 0.307 0.693 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.452 -22.166 10.274 24.435 hybrid contribution 0.461 0.764 -0.149 0.905 sum 0.913 -21.402 10.126 23.694 Atomic orbital electron populations 1.21691 0.92846 1.03616 1.02116 1.20466 0.97465 0.83269 1.06776 1.25238 0.89105 0.98502 0.85660 1.70396 1.28855 0.99464 1.29486 1.22195 0.93794 0.93535 0.92292 1.17694 1.00139 0.88832 0.95667 1.21184 0.97097 0.97667 0.93277 1.22128 0.98443 0.91386 1.01516 1.20192 0.99166 0.94014 0.96894 1.18538 0.83664 0.87902 0.85711 1.90547 1.38655 1.57685 1.66474 1.43989 1.07455 1.19223 1.43809 1.19605 1.01921 0.99140 1.27115 0.90797 1.25869 0.93468 0.99674 0.99798 1.69868 0.98653 1.43484 1.37455 0.85124 0.77950 0.77974 0.78428 1.19552 1.19106 1.20402 1.22456 0.90222 0.94048 0.97099 1.22121 0.99974 0.99272 0.98892 1.21077 0.97515 0.98462 0.93979 1.21070 0.98651 0.90668 0.99866 1.78154 1.25324 0.95519 1.16746 1.47953 1.37200 1.07683 1.26260 0.69308 0.93226 0.93015 0.89001 0.86877 0.85990 0.82861 0.82843 0.91021 0.91876 0.86350 0.94403 0.90175 0.92496 0.85673 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.87 71.98 0.71 -0.54 16 2 C -0.04 -0.28 6.56 29.85 0.20 -0.09 16 3 C 0.29 5.06 7.50 138.23 1.04 6.10 16 4 N -0.55 -14.18 10.77 -181.04 -1.95 -16.13 16 5 C 0.26 7.67 7.77 137.39 1.07 8.73 16 6 C -0.02 -0.65 5.88 -19.99 -0.12 -0.77 16 7 C -0.07 -2.31 9.67 22.44 0.22 -2.09 16 8 C -0.12 -4.30 7.40 22.50 0.17 -4.14 16 9 C -0.10 -4.30 5.20 -20.06 -0.10 -4.40 16 10 C 0.45 24.35 7.30 86.71 0.63 24.99 16 11 O -0.64 -39.69 16.47 -4.09 -0.07 -39.76 16 12 N -0.43 -23.10 2.64 -639.11 -1.69 -24.79 16 13 C -0.35 -20.15 9.40 84.11 0.79 -19.36 16 14 H 0.07 4.64 7.30 -2.91 -0.02 4.62 16 15 C 0.02 0.84 4.80 84.96 0.41 1.24 16 16 N -0.86 -42.13 8.31 21.68 0.18 -41.95 16 17 Si 0.98 41.67 29.62 68.60 2.03 43.71 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 C 0.08 3.80 4.88 86.38 0.42 4.23 16 22 C -0.15 -5.77 8.16 71.98 0.59 -5.18 16 23 C -0.09 -3.54 9.61 22.50 0.22 -3.32 16 24 C -0.08 -2.71 9.66 22.43 0.22 -2.50 16 25 N -0.33 -8.68 12.41 -52.40 -0.65 -9.33 16 26 N -0.47 -7.95 7.44 -50.73 -0.38 -8.33 16 27 H 0.46 3.67 8.96 -213.11 -1.91 1.76 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.15 4.25 7.82 -2.91 -0.02 4.23 16 34 H 0.15 5.58 3.18 -2.91 -0.01 5.57 16 35 H 0.28 12.64 8.31 -92.70 -0.77 11.87 16 36 H 0.06 2.62 5.09 -2.39 -0.01 2.60 16 37 H 0.12 5.84 5.47 -2.39 -0.01 5.83 16 38 H 0.04 1.51 6.76 -2.39 -0.02 1.49 16 39 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 40 H 0.06 2.47 6.21 -2.39 -0.01 2.46 16 41 H 0.13 4.92 8.04 -2.91 -0.02 4.89 16 42 H 0.15 4.21 7.82 -2.91 -0.02 4.18 16 Total: -1.00 -74.56 346.44 3.09 -71.46 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.83 Total: 22.21 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.44 Total: 2.91 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -4.48 Total: -100.53 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.07 Total: -39.76 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.71 kcal Total: -74.56 3.09 -71.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123485709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.351 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds