Wall clock time and date at job start Tue Mar 31 2020 10:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.50702 * 109.47498 * 120.00282 * 2 1 3 5 5 C 1.38355 * 119.45308 * 274.99984 * 4 2 1 6 6 C 1.38357 * 119.29807 * 180.02562 * 5 4 2 7 7 C 1.40034 * 118.29360 * 359.97438 * 6 5 4 8 8 C 1.47805 * 120.56179 * 180.02562 * 7 6 5 9 9 O 1.21561 * 120.00217 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99843 * 180.02562 * 8 7 6 11 11 C 1.40079 * 120.00161 * 179.97438 * 10 8 7 12 12 C 1.40426 * 125.97557 * 359.97438 * 11 10 8 13 13 C 1.35237 * 107.86928 * 179.97438 * 12 11 10 14 14 N 1.34964 * 107.86287 * 0.26438 * 13 12 11 15 15 C 1.46501 * 125.97659 * 179.73677 * 14 13 12 16 16 C 1.50695 * 109.47326 * 124.99643 * 15 14 13 17 17 H 1.07997 * 120.00282 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00382 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99826 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47163 * 90.00155 * 20 18 16 22 22 H 1.48502 * 109.47165 * 209.99815 * 20 18 16 23 23 H 1.48497 * 109.47118 * 330.00074 * 20 18 16 24 24 N 1.31233 * 125.98003 * 179.97438 * 11 10 8 25 25 C 1.39534 * 118.87231 * 0.27832 * 7 6 5 26 26 N 1.31690 * 120.56985 * 359.40623 * 25 7 6 27 27 H 1.09005 * 109.46809 * 299.99975 * 1 2 3 28 28 H 1.08995 * 109.47462 * 59.99500 * 1 2 3 29 29 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46809 * 240.00025 * 2 1 3 31 31 H 1.08998 * 109.46686 * 300.00165 * 3 2 1 32 32 H 1.08997 * 109.47238 * 59.99882 * 3 2 1 33 33 H 1.08996 * 109.47209 * 180.02562 * 3 2 1 34 34 H 1.07991 * 120.35283 * 0.02562 * 5 4 2 35 35 H 1.08003 * 120.85204 * 179.97438 * 6 5 4 36 36 H 0.96998 * 120.00051 * 359.97438 * 10 8 7 37 37 H 1.08002 * 126.06390 * 0.02562 * 12 11 10 38 38 H 1.08002 * 126.06518 * 179.97438 * 13 12 11 39 39 H 1.09006 * 109.47541 * 245.00283 * 15 14 13 40 40 H 1.09002 * 109.46874 * 4.99800 * 15 14 13 41 41 H 0.97001 * 120.00298 * 179.97438 * 19 18 16 42 42 H 1.08007 * 119.71424 * 179.72444 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1602 -0.0094 2.4163 6 6 2.6223 -0.6647 3.5438 7 6 2.9439 -2.0234 3.4368 8 6 3.4414 -2.7725 4.6098 9 8 3.5749 -2.2094 5.6788 10 7 3.7481 -4.0799 4.4939 11 6 4.2200 -4.7898 5.6054 12 6 4.4210 -4.2675 6.8933 13 6 4.8820 -5.2669 7.6791 14 7 4.9768 -6.3795 6.9210 15 6 5.4401 -7.6932 7.3747 16 6 4.3911 -8.7300 7.0660 17 1 3.4714 -8.4397 6.5800 18 6 4.6054 -10.0495 7.4039 19 7 3.6902 -10.9545 7.1340 20 14 6.1959 -10.5516 8.2451 21 1 6.0272 -10.4606 9.7177 22 1 6.5341 -11.9485 7.8712 23 1 7.2908 -9.6452 7.8153 24 7 4.5518 -6.0594 5.6253 25 6 2.7919 -2.6566 2.2028 26 7 2.3423 -1.9908 1.1593 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.9021 1.0383 2.4614 35 1 2.7322 -0.1417 4.4824 36 1 3.6419 -4.5291 3.6408 37 1 4.2388 -3.2486 7.2018 38 1 5.1344 -5.1875 8.7262 39 1 6.3665 -7.9493 6.8606 40 1 5.6173 -7.6645 8.4499 41 1 3.8411 -11.8828 7.3714 42 1 3.0402 -3.7031 2.1038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123839112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:55 Heat of formation + Delta-G solvation = 81.161720 kcal Electronic energy + Delta-G solvation = -24340.746170 eV Core-core repulsion = 20708.835683 eV Total energy + Delta-G solvation = -3631.910487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17603 -40.53558 -39.09884 -35.95121 -34.97870 -33.34915 -32.86114 -31.57920 -30.51375 -29.43986 -27.63915 -27.24826 -25.30473 -23.85168 -22.81556 -22.02800 -20.91292 -20.31355 -19.72769 -17.98511 -17.23467 -16.90843 -16.45183 -16.23282 -15.53740 -15.39631 -15.21725 -14.76799 -14.42795 -14.29100 -14.17483 -13.65321 -13.40474 -13.33421 -13.14475 -12.93640 -12.57088 -12.47959 -12.37012 -12.18852 -11.68174 -11.61174 -11.38210 -11.20341 -10.80868 -10.70785 -10.28689 -10.22588 -10.04203 -9.95955 -9.60954 -9.54956 -9.37121 -8.78109 -8.25440 -7.58886 -6.24798 -4.27389 0.30216 0.89333 2.36411 2.58907 2.81521 3.14474 3.21399 3.23091 3.39364 3.63859 3.73954 3.74843 4.21578 4.21631 4.43932 4.49581 4.61600 4.66044 4.73136 4.79474 5.02579 5.10199 5.19504 5.24548 5.35247 5.39121 5.44688 5.52138 5.64054 5.66787 5.76217 5.81417 5.87385 6.10137 6.21099 6.33952 6.38873 6.49950 6.62892 7.21158 7.25824 7.48121 7.54284 7.76857 8.07881 8.31111 8.49901 8.84734 9.29852 10.87820 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.002249 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.649738 B =12445.406098 C =13079.788665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.149 4.149 4 C 0.157 3.843 5 C -0.178 4.178 6 C -0.011 4.011 7 C -0.186 4.186 8 C 0.571 3.429 9 O -0.512 6.512 10 N -0.624 5.624 11 C 0.259 3.741 12 C -0.283 4.283 13 C 0.052 3.948 14 N -0.317 5.317 15 C 0.231 3.769 16 C -0.535 4.535 17 H 0.086 0.914 18 C 0.076 3.924 19 N -0.887 5.887 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.294 5.294 25 C 0.142 3.858 26 N -0.484 5.484 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.411 0.589 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.268 0.732 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 24.226 -11.350 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.206 4.206 4 C 0.020 3.980 5 C -0.198 4.198 6 C -0.037 4.037 7 C -0.191 4.191 8 C 0.357 3.643 9 O -0.387 6.387 10 N -0.271 5.271 11 C 0.005 3.995 12 C -0.314 4.314 13 C -0.097 4.097 14 N -0.099 5.099 15 C 0.113 3.887 16 C -0.573 4.573 17 H 0.104 0.896 18 C -0.128 4.128 19 N -0.524 5.524 20 Si 0.699 3.301 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 N -0.124 5.124 25 C -0.017 4.017 26 N -0.192 5.192 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.248 0.752 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.454 22.788 -11.996 25.870 hybrid contribution 0.729 0.241 1.376 1.575 sum -1.726 23.029 -10.621 25.419 Atomic orbital electron populations 1.21811 0.93227 1.02632 1.02321 1.20134 0.96466 0.95507 0.94873 1.21944 1.01500 0.94659 1.02541 1.21511 0.91918 0.89725 0.94851 1.21995 1.02812 1.02056 0.92923 1.21734 0.90348 0.92316 0.99317 1.20838 1.07131 0.96081 0.95082 1.17903 0.77659 0.80732 0.88006 1.90717 1.51871 1.68217 1.27877 1.42286 1.63911 1.09334 1.11585 1.19039 1.01329 0.91018 0.88066 1.21544 1.16339 1.01903 0.91586 1.22569 1.01974 0.86765 0.98429 1.48640 1.46759 1.09660 1.04808 1.20071 0.96735 0.76910 0.95029 1.21098 1.03987 0.90971 1.41285 0.89623 1.24837 0.96665 0.96062 0.95212 1.69869 1.33968 1.02178 1.46377 0.86905 0.83935 0.78909 0.80337 1.19705 1.20513 1.18866 1.77409 1.22846 1.10946 1.01223 1.23041 0.91755 0.99865 0.87059 1.67535 1.11757 1.08530 1.31404 0.92363 0.91639 0.92076 0.88879 0.91605 0.91986 0.92204 0.83808 0.83214 0.75244 0.82052 0.81263 0.93951 0.93266 0.92153 0.82103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.18 37.16 0.34 -0.48 16 2 C -0.05 -0.33 3.23 -91.77 -0.30 -0.63 16 3 C -0.15 -0.70 8.61 37.16 0.32 -0.38 16 4 C 0.16 1.41 5.79 -82.51 -0.48 0.93 16 5 C -0.18 -1.43 9.16 -39.49 -0.36 -1.79 16 6 C -0.01 -0.11 9.72 -38.86 -0.38 -0.48 16 7 C -0.19 -2.13 5.89 -104.83 -0.62 -2.74 16 8 C 0.57 8.28 7.75 -12.35 -0.10 8.19 16 9 O -0.51 -8.68 13.55 5.31 0.07 -8.60 16 10 N -0.62 -9.62 5.40 -12.00 -0.06 -9.69 16 11 C 0.26 5.10 8.11 -154.45 -1.25 3.85 16 12 C -0.28 -5.40 9.60 -39.83 -0.38 -5.79 16 13 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 14 N -0.32 -7.10 3.67 -62.56 -0.23 -7.33 16 15 C 0.23 5.43 5.33 -5.20 -0.03 5.41 16 16 C -0.54 -15.02 9.79 -34.44 -0.34 -15.36 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 20 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 24 N -0.29 -6.66 12.42 31.43 0.39 -6.27 16 25 C 0.14 1.49 10.71 -17.13 -0.18 1.31 16 26 N -0.48 -5.22 10.25 -9.13 -0.09 -5.31 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.24 6.48 -51.93 -0.34 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.14 0.77 6.29 -52.49 -0.33 0.44 16 35 H 0.15 1.34 7.74 -52.48 -0.41 0.94 16 36 H 0.41 5.20 6.89 -40.82 -0.28 4.92 16 37 H 0.16 2.97 5.91 -52.49 -0.31 2.65 16 38 H 0.17 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 40 H 0.05 1.04 7.49 -51.93 -0.39 0.65 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.16 1.39 6.42 -52.48 -0.34 1.05 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -34.22 354.93 -7.83 -42.05 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.31 Total: 5.34 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -4.04 Total: -5.16 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.78 Total: -54.32 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.22 -7.83 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123839112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.209 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds