Wall clock time and date at job start Tue Mar 31 2020 10:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.50702 * 109.47498 * 120.00282 * 2 1 3 5 5 C 1.38355 * 119.45308 * 274.99984 * 4 2 1 6 6 C 1.38357 * 119.29807 * 180.02562 * 5 4 2 7 7 C 1.40034 * 118.29360 * 359.97438 * 6 5 4 8 8 C 1.47805 * 120.56179 * 180.02562 * 7 6 5 9 9 O 1.21561 * 120.00217 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99843 * 180.02562 * 8 7 6 11 11 C 1.40079 * 120.00161 * 179.97438 * 10 8 7 12 12 C 1.40426 * 125.97557 * 359.97438 * 11 10 8 13 13 C 1.35237 * 107.86928 * 179.97438 * 12 11 10 14 14 N 1.34964 * 107.86287 * 0.26438 * 13 12 11 15 15 C 1.46501 * 125.97659 * 179.73677 * 14 13 12 16 16 C 1.50695 * 109.47326 * 124.99643 * 15 14 13 17 17 H 1.07997 * 120.00282 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00382 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99826 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47163 * 90.00155 * 20 18 16 22 22 H 1.48502 * 109.47165 * 209.99815 * 20 18 16 23 23 H 1.48497 * 109.47118 * 330.00074 * 20 18 16 24 24 N 1.31233 * 125.98003 * 179.97438 * 11 10 8 25 25 C 1.39534 * 118.87231 * 0.27832 * 7 6 5 26 26 N 1.31690 * 120.56985 * 359.40623 * 25 7 6 27 27 H 1.09005 * 109.46809 * 299.99975 * 1 2 3 28 28 H 1.08995 * 109.47462 * 59.99500 * 1 2 3 29 29 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46809 * 240.00025 * 2 1 3 31 31 H 1.08998 * 109.46686 * 300.00165 * 3 2 1 32 32 H 1.08997 * 109.47238 * 59.99882 * 3 2 1 33 33 H 1.08996 * 109.47209 * 180.02562 * 3 2 1 34 34 H 1.07991 * 120.35283 * 0.02562 * 5 4 2 35 35 H 1.08003 * 120.85204 * 179.97438 * 6 5 4 36 36 H 0.96998 * 120.00051 * 359.97438 * 10 8 7 37 37 H 1.08002 * 126.06390 * 0.02562 * 12 11 10 38 38 H 1.08002 * 126.06518 * 179.97438 * 13 12 11 39 39 H 1.09006 * 109.47541 * 245.00283 * 15 14 13 40 40 H 1.09002 * 109.46874 * 4.99800 * 15 14 13 41 41 H 0.97001 * 120.00298 * 179.97438 * 19 18 16 42 42 H 1.08007 * 119.71424 * 179.72444 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1602 -0.0094 2.4163 6 6 2.6223 -0.6647 3.5438 7 6 2.9439 -2.0234 3.4368 8 6 3.4414 -2.7725 4.6098 9 8 3.5749 -2.2094 5.6788 10 7 3.7481 -4.0799 4.4939 11 6 4.2200 -4.7898 5.6054 12 6 4.4210 -4.2675 6.8933 13 6 4.8820 -5.2669 7.6791 14 7 4.9768 -6.3795 6.9210 15 6 5.4401 -7.6932 7.3747 16 6 4.3911 -8.7300 7.0660 17 1 3.4714 -8.4397 6.5800 18 6 4.6054 -10.0495 7.4039 19 7 3.6902 -10.9545 7.1340 20 14 6.1959 -10.5516 8.2451 21 1 6.0272 -10.4606 9.7177 22 1 6.5341 -11.9485 7.8712 23 1 7.2908 -9.6452 7.8153 24 7 4.5518 -6.0594 5.6253 25 6 2.7919 -2.6566 2.2028 26 7 2.3423 -1.9908 1.1593 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.9021 1.0383 2.4614 35 1 2.7322 -0.1417 4.4824 36 1 3.6419 -4.5291 3.6408 37 1 4.2388 -3.2486 7.2018 38 1 5.1344 -5.1875 8.7262 39 1 6.3665 -7.9493 6.8606 40 1 5.6173 -7.6645 8.4499 41 1 3.8411 -11.8828 7.3714 42 1 3.0402 -3.7031 2.1038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123839112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:54 Heat of formation + Delta-G solvation = 58.753432 kcal Electronic energy + Delta-G solvation = -24341.717866 eV Core-core repulsion = 20708.835683 eV Total energy + Delta-G solvation = -3632.882183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.39396 -41.66509 -40.27132 -36.56395 -36.37660 -35.24467 -33.67448 -33.23684 -31.51446 -30.96100 -29.00679 -28.03950 -26.26122 -24.78068 -24.32509 -23.23194 -22.04666 -21.54470 -20.95968 -19.12326 -19.08049 -18.27673 -17.62160 -17.05183 -16.82030 -16.68047 -16.31653 -16.08561 -15.50315 -15.36901 -15.06382 -14.87306 -14.79637 -14.40279 -14.17879 -13.91860 -13.87466 -13.77638 -13.62417 -13.01264 -12.86537 -12.54249 -12.35829 -12.22361 -12.07069 -11.89439 -11.83635 -11.67892 -11.52093 -11.21764 -11.01418 -10.87385 -10.50674 -10.14863 -9.81446 -9.15489 -8.37854 -6.48348 -0.54613 0.14362 0.98501 1.23191 1.36530 1.40866 1.49797 1.50400 2.15478 2.25285 2.28806 2.72376 2.94632 2.98721 3.48426 3.57304 3.73038 3.85006 3.94237 4.09442 4.16798 4.18450 4.27614 4.50715 4.57753 4.63915 4.70048 4.82930 4.83566 4.87075 4.89588 4.91775 4.98950 5.03922 5.11096 5.22750 5.23899 5.37260 5.43146 5.51244 5.81357 5.98557 6.10738 6.38921 6.57419 6.76748 6.86396 6.98248 7.14526 8.79198 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.002249 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.649738 B =12445.406098 C =13079.788665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C -0.146 4.146 4 C 0.154 3.846 5 C -0.168 4.168 6 C -0.013 4.013 7 C -0.200 4.200 8 C 0.575 3.425 9 O -0.537 6.537 10 N -0.622 5.622 11 C 0.263 3.737 12 C -0.293 4.293 13 C 0.063 3.937 14 N -0.342 5.342 15 C 0.239 3.761 16 C -0.547 4.547 17 H 0.026 0.974 18 C 0.013 3.987 19 N -0.942 5.942 20 Si 0.956 3.044 21 H -0.253 1.253 22 H -0.281 1.281 23 H -0.239 1.239 24 N -0.345 5.345 25 C 0.139 3.861 26 N -0.505 5.505 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.421 0.579 37 H 0.171 0.829 38 H 0.214 0.786 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.272 0.728 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 26.625 -10.831 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.203 4.203 4 C 0.017 3.983 5 C -0.187 4.187 6 C -0.039 4.039 7 C -0.206 4.206 8 C 0.364 3.636 9 O -0.414 6.414 10 N -0.270 5.270 11 C 0.009 3.991 12 C -0.324 4.324 13 C -0.085 4.085 14 N -0.124 5.124 15 C 0.119 3.881 16 C -0.585 4.585 17 H 0.044 0.956 18 C -0.186 4.186 19 N -0.581 5.581 20 Si 0.777 3.223 21 H -0.177 1.177 22 H -0.207 1.207 23 H -0.162 1.162 24 N -0.176 5.176 25 C -0.019 4.019 26 N -0.214 5.214 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.194 0.806 35 H 0.175 0.825 36 H 0.260 0.740 37 H 0.188 0.812 38 H 0.230 0.770 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.245 25.230 -11.507 27.758 hybrid contribution 0.185 -0.351 1.069 1.140 sum -1.060 24.879 -10.438 27.000 Atomic orbital electron populations 1.21805 0.92523 1.01901 1.03518 1.20232 0.96922 0.96441 0.93376 1.21943 1.01231 0.93260 1.03897 1.22069 0.90707 0.89296 0.96215 1.22296 1.01396 1.03379 0.91671 1.21938 0.89956 0.91627 1.00337 1.20628 1.09142 0.96734 0.94066 1.18369 0.76549 0.80112 0.88600 1.90681 1.53004 1.68566 1.29121 1.42424 1.63787 1.09693 1.11146 1.19414 0.99708 0.90462 0.89526 1.21776 1.16733 1.02431 0.91483 1.23286 0.99964 0.85295 0.99974 1.48537 1.48491 1.10080 1.05308 1.19916 0.95004 0.76373 0.96817 1.21224 1.03340 0.92962 1.41015 0.95576 1.25943 1.01208 0.95621 0.95800 1.70050 1.36971 1.02835 1.48218 0.85604 0.78578 0.78488 0.79623 1.17692 1.20690 1.16195 1.77326 1.25270 1.12647 1.02363 1.23189 0.91488 1.00433 0.86812 1.67600 1.12612 1.09710 1.31467 0.91682 0.89957 0.93767 0.89586 0.90237 0.90710 0.92626 0.80558 0.82453 0.74032 0.81195 0.76984 0.93567 0.89874 0.91880 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.18 71.98 0.66 -0.70 16 2 C -0.05 -0.57 3.23 -11.54 -0.04 -0.60 16 3 C -0.15 -0.95 8.61 71.98 0.62 -0.33 16 4 C 0.15 2.53 5.79 42.57 0.25 2.78 16 5 C -0.17 -2.32 9.16 22.33 0.20 -2.12 16 6 C -0.01 -0.23 9.72 22.73 0.22 -0.01 16 7 C -0.20 -4.51 5.89 -20.00 -0.12 -4.63 16 8 C 0.58 16.76 7.75 86.77 0.67 17.43 16 9 O -0.54 -18.11 13.55 -3.91 -0.05 -18.16 16 10 N -0.62 -19.60 5.40 -310.16 -1.67 -21.28 16 11 C 0.26 10.55 8.11 133.35 1.08 11.63 16 12 C -0.29 -11.07 9.60 22.11 0.21 -10.86 16 13 C 0.06 2.29 11.44 83.52 0.96 3.25 16 14 N -0.34 -15.31 3.67 -351.84 -1.29 -16.60 16 15 C 0.24 11.00 5.33 85.63 0.46 11.46 16 16 C -0.55 -31.63 9.79 25.60 0.25 -31.38 16 17 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 18 C 0.01 0.74 5.47 84.66 0.46 1.20 16 19 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 20 Si 0.96 40.64 27.47 68.60 1.88 42.52 16 21 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.24 -9.13 6.54 99.48 0.65 -8.47 16 24 N -0.35 -16.13 12.42 -54.48 -0.68 -16.80 16 25 C 0.14 2.93 10.71 85.03 0.91 3.84 16 26 N -0.51 -10.64 10.25 -182.80 -1.87 -12.51 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.30 6.48 -2.39 -0.02 0.29 16 33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.18 1.23 6.29 -2.92 -0.02 1.21 16 35 H 0.16 2.59 7.74 -2.91 -0.02 2.57 16 36 H 0.42 11.11 6.89 -92.71 -0.64 10.47 16 37 H 0.17 6.11 5.91 -2.91 -0.02 6.09 16 38 H 0.21 5.58 8.06 -2.91 -0.02 5.55 16 39 H 0.05 2.09 7.20 -2.38 -0.02 2.07 16 40 H 0.08 3.27 7.49 -2.39 -0.02 3.25 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.17 3.02 6.42 -2.91 -0.02 3.01 16 Total: -1.00 -78.16 354.93 3.78 -74.38 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.36 Total: 25.38 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 6.80 Total: 0.96 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -5.22 Total: -125.09 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.88 Total: 42.52 kcal Total: -78.16 3.78 -74.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123839112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.135 kcal (2) G-P(sol) polarization free energy of solvation -78.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds