Wall clock time and date at job start Tue Mar 31 2020 10:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50690 * 109.47102 * 2 1 4 4 C 1.39678 * 126.07119 * 124.71766 * 3 2 1 5 5 C 1.38407 * 105.36004 * 179.84759 * 4 3 2 6 6 C 1.47161 * 126.88269 * 180.17023 * 5 4 3 7 7 O 1.21630 * 120.00031 * 351.24136 * 6 5 4 8 8 N 1.34773 * 119.99887 * 171.23329 * 6 5 4 9 9 C 1.46496 * 120.00345 * 1.20232 * 8 6 5 10 10 C 1.50707 * 109.47056 * 82.24958 * 9 8 6 11 11 H 1.08001 * 119.99856 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99958 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99757 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99976 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47059 * 60.00167 * 14 12 10 16 16 H 1.48506 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46971 * 300.00203 * 14 12 10 18 18 C 1.46503 * 119.99883 * 181.19482 * 8 6 5 19 19 C 1.50704 * 109.47107 * 90.00615 * 18 8 6 20 20 C 1.38677 * 120.41615 * 269.72520 * 19 18 8 21 21 C 1.38625 * 118.41617 * 179.77885 * 20 19 18 22 22 C 1.38232 * 119.16327 * 0.51076 * 21 20 19 23 23 N 1.31850 * 120.76038 * 359.72584 * 22 21 20 24 24 C 1.31889 * 121.73091 * 0.02562 * 23 22 21 25 25 N 1.36592 * 106.23002 * 0.40163 * 5 4 3 26 26 H 0.97007 * 125.18727 * 179.75491 * 25 5 4 27 27 N 1.28438 * 109.62339 * 359.73822 * 25 5 4 28 28 H 1.08996 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47143 * 300.00349 * 1 2 3 30 30 H 1.09004 * 109.47257 * 59.99714 * 1 2 3 31 31 H 1.09006 * 109.46680 * 239.99900 * 2 1 3 32 32 H 1.08995 * 109.46977 * 120.00374 * 2 1 3 33 33 H 1.08002 * 127.31652 * 359.97438 * 4 3 2 34 34 H 1.08991 * 109.47713 * 202.24988 * 9 8 6 35 35 H 1.09005 * 109.46719 * 322.25329 * 9 8 6 36 36 H 0.97000 * 119.99759 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47083 * 210.00510 * 18 8 6 38 38 H 1.09000 * 109.47151 * 330.00796 * 18 8 6 39 39 H 1.07994 * 120.79387 * 0.02562 * 20 19 18 40 40 H 1.08007 * 120.41855 * 180.21389 * 21 20 19 41 41 H 1.08000 * 119.61975 * 179.74661 * 22 21 20 42 42 H 1.07997 * 119.61573 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9127 1.9818 0.9280 5 6 3.0841 3.2943 0.5236 6 6 3.9256 4.3146 1.1691 7 8 4.4347 4.0880 2.2502 8 7 4.1322 5.5001 0.5622 9 6 3.4978 5.7831 -0.7276 10 6 2.0809 6.2433 -0.5003 11 1 1.6920 6.3179 0.5045 12 6 1.2810 6.5691 -1.5751 13 7 1.7546 6.4777 -2.7987 14 14 -0.4750 7.1402 -1.2933 15 1 -0.4678 8.3726 -0.4650 16 1 -1.1185 7.4258 -2.6009 17 1 -1.2350 6.0756 -0.5902 18 6 4.9910 6.5058 1.1924 19 6 6.4135 6.3095 0.7350 20 6 7.2710 5.4817 1.4440 21 6 8.5694 5.3273 0.9836 22 6 8.9666 6.0071 -0.1527 23 7 8.1251 6.7900 -0.7988 24 6 6.8814 6.9567 -0.3926 25 7 2.3117 3.4542 -0.5915 26 1 2.2258 4.2766 -1.0988 27 7 1.7169 2.3496 -0.8662 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3652 1.4943 1.7789 34 1 4.0554 6.5650 -1.2431 35 1 3.4929 4.8788 -1.3363 36 1 1.1920 6.7073 -3.5548 37 1 4.6523 7.5022 0.9085 38 1 4.9399 6.3997 2.2760 39 1 6.9342 4.9664 2.3313 40 1 9.2635 4.6877 1.5088 41 1 9.9776 5.8954 -0.5155 42 1 6.2210 7.6059 -0.9482 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126997502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:29 Heat of formation + Delta-G solvation = 61.794022 kcal Electronic energy + Delta-G solvation = -26194.133565 eV Core-core repulsion = 22561.383232 eV Total energy + Delta-G solvation = -3632.750333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.50019 -41.33524 -40.26850 -37.33358 -35.40201 -34.91805 -33.68590 -32.70424 -31.74110 -30.90446 -29.53932 -27.64900 -25.50226 -24.91033 -24.44174 -23.98915 -22.55606 -21.45857 -20.69656 -19.03340 -18.50504 -17.98620 -17.48155 -17.25544 -16.97163 -16.80455 -16.37972 -16.20005 -15.47260 -15.03975 -14.95340 -14.74104 -14.61459 -14.43441 -14.38819 -14.23724 -13.93065 -13.43085 -13.34629 -13.10592 -12.93106 -12.81056 -12.53307 -12.31861 -12.29379 -12.10804 -11.94963 -11.48572 -11.16632 -10.85634 -10.73740 -10.50164 -10.11640 -10.02643 -9.96057 -9.66482 -8.44408 -6.64856 0.08013 0.31058 0.36134 1.33936 1.37234 1.43500 1.67906 1.97693 2.17826 2.23800 2.39256 2.86577 2.90944 3.45165 3.51445 3.77363 3.83301 3.90252 4.07196 4.07707 4.11898 4.38371 4.45341 4.48843 4.51391 4.61461 4.65331 4.70038 4.77137 4.82249 4.88329 4.96880 5.11659 5.17866 5.27927 5.33149 5.41641 5.44327 5.55012 5.68744 5.69321 5.75474 6.20430 6.30814 6.52699 6.98685 6.99107 7.10310 7.25167 8.57872 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.005461 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.204290 B = 5125.865843 C = 7131.574068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.032 4.032 3 C 0.010 3.990 4 C -0.174 4.174 5 C -0.054 4.054 6 C 0.589 3.411 7 O -0.562 6.562 8 N -0.587 5.587 9 C 0.234 3.766 10 C -0.570 4.570 11 H 0.061 0.939 12 C 0.037 3.963 13 N -0.900 5.900 14 Si 0.950 3.050 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.279 1.279 18 C 0.161 3.839 19 C -0.160 4.160 20 C -0.064 4.064 21 C -0.169 4.169 22 C 0.090 3.910 23 N -0.511 5.511 24 C 0.101 3.899 25 N -0.364 5.364 26 H 0.464 0.536 27 N -0.307 5.307 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.177 0.823 34 H 0.047 0.953 35 H 0.018 0.982 36 H 0.278 0.722 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 -6.182 6.050 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.146 4.146 4 C -0.203 4.203 5 C -0.184 4.184 6 C 0.377 3.623 7 O -0.441 6.441 8 N -0.316 5.316 9 C 0.112 3.888 10 C -0.609 4.609 11 H 0.079 0.921 12 C -0.168 4.168 13 N -0.536 5.536 14 Si 0.775 3.225 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.204 1.204 18 C 0.039 3.961 19 C -0.163 4.163 20 C -0.091 4.091 21 C -0.189 4.189 22 C -0.067 4.067 23 N -0.220 5.220 24 C -0.056 4.056 25 N -0.095 5.095 26 H 0.327 0.673 27 N -0.142 5.142 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.194 0.806 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.185 0.815 41 H 0.203 0.797 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.650 -5.537 4.666 9.831 hybrid contribution -0.937 0.606 0.881 1.422 sum 5.713 -4.931 5.547 9.365 Atomic orbital electron populations 1.21693 0.94503 1.02665 1.01218 1.20008 0.96228 0.86376 1.04444 1.22680 1.00072 0.98100 0.93785 1.22233 1.03410 0.91620 1.03058 1.21908 1.03674 0.97927 0.94863 1.17139 0.79620 0.81334 0.84159 1.90670 1.52630 1.79855 1.20968 1.48074 1.46416 1.14361 1.22768 1.19482 0.92850 0.96473 0.79980 1.21620 0.97315 1.48163 0.93784 0.92121 1.25623 1.02365 0.94227 0.94567 1.69964 1.38614 1.46146 0.98870 0.85690 0.79560 0.79212 0.78028 1.18857 1.19983 1.20411 1.20325 0.84837 0.92295 0.98653 1.21250 0.97172 0.99962 0.97900 1.21812 0.93647 0.94459 0.99169 1.22488 0.96714 1.01333 0.98331 1.23357 1.00086 0.91378 0.91858 1.67719 1.04067 1.18085 1.32113 1.22774 0.92377 0.97245 0.93213 1.45993 1.30325 1.12209 1.20927 0.67271 1.73012 1.20308 0.94138 1.26786 0.89606 0.93609 0.94078 0.89629 0.87646 0.80587 0.93479 0.96509 0.91283 0.88137 0.88832 0.84405 0.81544 0.79722 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.87 71.98 0.71 -2.66 16 2 C -0.03 -0.78 6.51 29.85 0.19 -0.59 16 3 C 0.01 0.35 6.49 43.05 0.28 0.63 16 4 C -0.17 -6.37 10.78 22.66 0.24 -6.13 16 5 C -0.05 -2.29 6.70 40.79 0.27 -2.02 16 6 C 0.59 24.96 7.59 86.59 0.66 25.62 16 7 O -0.56 -23.83 16.21 -4.13 -0.07 -23.90 16 8 N -0.59 -23.73 2.46 -834.69 -2.06 -25.79 16 9 C 0.23 10.57 4.73 85.64 0.40 10.98 16 10 C -0.57 -27.61 7.32 25.60 0.19 -27.43 16 11 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 12 C 0.04 1.81 5.09 84.65 0.43 2.24 16 13 N -0.90 -45.87 13.29 21.45 0.28 -45.59 16 14 Si 0.95 40.07 29.54 68.60 2.03 42.10 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 C 0.16 5.45 5.53 85.63 0.47 5.92 16 19 C -0.16 -5.02 5.48 -19.77 -0.11 -5.13 16 20 C -0.06 -1.82 9.86 22.47 0.22 -1.59 16 21 C -0.17 -3.87 10.11 22.36 0.23 -3.65 16 22 C 0.09 2.19 11.18 84.69 0.95 3.13 16 23 N -0.51 -15.73 10.36 -195.84 -2.03 -17.76 16 24 C 0.10 3.21 10.86 84.67 0.92 4.13 16 25 N -0.36 -16.49 5.71 -48.00 -0.27 -16.76 16 26 H 0.46 22.37 3.37 -220.00 -0.74 21.63 16 27 N -0.31 -13.03 12.11 -47.50 -0.58 -13.61 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.11 1.98 8.12 -2.39 -0.02 1.96 16 33 H 0.18 5.45 8.06 -2.91 -0.02 5.43 16 34 H 0.05 2.17 8.01 -2.39 -0.02 2.15 16 35 H 0.02 0.85 5.18 -2.38 -0.01 0.84 16 36 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.10 3.20 8.02 -2.39 -0.02 3.18 16 38 H 0.09 3.06 7.36 -2.39 -0.02 3.04 16 39 H 0.14 3.89 7.76 -2.91 -0.02 3.87 16 40 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.15 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -59.73 357.86 3.68 -56.05 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: 0.31 Total: 41.79 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.06 Total: 3.46 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -4.65 Total: -119.51 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.90 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -59.73 3.68 -56.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126997502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.847 kcal (2) G-P(sol) polarization free energy of solvation -59.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds