Wall clock time and date at job start Tue Mar 31 2020 11:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.39500 * 125.69362 * 74.71080 * 5 2 1 7 7 C 1.36671 * 107.86458 * 179.83382 * 6 5 2 8 8 N 1.38460 * 126.34525 * 180.14158 * 7 6 5 9 9 C 1.34784 * 119.99878 * 0.34106 * 8 7 6 10 10 O 1.21822 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.41474 * 120.00013 * 180.02562 * 9 8 7 12 12 H 1.08001 * 120.00064 * 359.97438 * 11 9 8 13 13 C 1.40167 * 120.00069 * 179.97438 * 11 9 8 14 14 N 1.30612 * 119.99956 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 120.00095 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46976 * 89.99810 * 15 13 11 17 17 H 1.48492 * 109.46804 * 209.99647 * 15 13 11 18 18 H 1.48496 * 109.47167 * 329.99891 * 15 13 11 19 19 N 1.36494 * 107.31205 * 0.42519 * 7 6 5 20 20 C 1.39712 * 126.14980 * 179.77064 * 19 7 6 21 21 C 1.38989 * 119.69083 * 154.98374 * 20 19 7 22 22 C 1.38394 * 119.10441 * 179.97438 * 21 20 19 23 23 C 1.38812 * 118.48935 * 0.02562 * 22 21 20 24 24 C 1.38129 * 119.29692 * 359.97438 * 23 22 21 25 25 N 1.31903 * 120.84491 * 359.74625 * 24 23 22 26 26 N 1.31031 * 125.68787 * 255.02590 * 5 2 1 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 36 36 H 1.07992 * 126.06842 * 0.02562 * 6 5 2 37 37 H 0.97000 * 120.00765 * 180.33522 * 8 7 6 38 38 H 0.97004 * 120.00249 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.44647 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.75638 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.35458 * 180.02562 * 23 22 21 42 42 H 1.07997 * 119.58174 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 2.0221 -0.1972 -2.5277 7 6 2.5632 -1.1401 -3.3559 8 7 2.7396 -1.0262 -4.7245 9 6 2.3674 0.1025 -5.3603 10 8 1.8753 1.0221 -4.7309 11 6 2.5471 0.2187 -6.7587 12 1 2.9830 -0.5968 -7.3168 13 6 2.1595 1.3922 -7.4201 14 7 1.6320 2.3782 -6.7453 15 14 2.3975 1.5459 -9.2665 16 1 1.1855 1.0476 -9.9650 17 1 2.6217 2.9707 -9.6197 18 1 3.5744 0.7417 -9.6826 19 7 2.8917 -2.2175 -2.5849 20 6 3.4692 -3.4074 -3.0347 21 6 4.2144 -4.1859 -2.1569 22 6 4.7806 -5.3626 -2.6153 23 6 4.5812 -5.7207 -3.9415 24 6 3.8289 -4.8987 -4.7578 25 7 3.2970 -3.7856 -4.2911 26 7 2.5465 -1.9151 -1.2613 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 1.6767 -0.2075 2.1392 36 1 1.6548 0.7741 -2.8243 37 1 3.1311 -1.7585 -5.2257 38 1 1.3641 3.1905 -7.2028 39 1 4.3491 -3.8770 -1.1308 40 1 5.3644 -5.9880 -1.9561 41 1 5.0088 -6.6328 -4.3307 42 1 3.6705 -5.1731 -5.7902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185301527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:53 Heat of formation + Delta-G solvation = 76.197770 kcal Electronic energy + Delta-G solvation = -26066.179514 eV Core-core repulsion = 22434.053775 eV Total energy + Delta-G solvation = -3632.125740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15703 -39.74768 -37.73265 -36.46510 -33.50140 -32.96394 -32.32235 -32.26183 -28.97511 -28.70098 -27.06365 -26.94832 -26.15518 -23.75772 -23.70571 -21.67131 -21.26177 -19.38352 -18.49662 -17.77404 -16.87011 -16.42710 -15.96323 -15.53508 -15.21829 -14.93437 -14.40918 -14.22145 -13.98947 -13.88372 -13.50068 -13.44105 -13.24345 -12.59085 -12.55404 -12.40224 -12.02937 -11.98109 -11.82771 -11.43340 -11.36325 -11.17308 -10.86147 -10.77451 -10.74460 -10.69036 -10.39316 -10.05575 -9.86770 -9.72104 -9.69889 -9.51051 -8.95803 -7.92034 -7.74040 -7.00429 -6.43130 -4.95841 0.92093 1.19496 2.47525 2.60429 3.03723 3.10812 3.14457 3.54193 3.81460 3.94851 4.38825 4.43268 4.58402 4.65428 4.82302 4.99912 5.08067 5.12740 5.21048 5.28324 5.54616 5.68299 5.72151 5.74648 5.85586 5.90314 6.05446 6.07779 6.09975 6.16638 6.20702 6.23077 6.36105 6.40198 6.54638 6.61034 6.68136 6.92688 7.16873 7.27296 7.52054 7.77239 7.84043 8.00288 8.11112 8.43367 8.74579 9.23498 10.31828 10.50879 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.005414 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.501424 B = 5170.131667 C = 7934.745736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 C -0.137 4.137 4 C -0.133 4.133 5 C 0.121 3.879 6 C -0.301 4.301 7 C 0.370 3.630 8 N -0.658 5.658 9 C 0.545 3.455 10 O -0.552 6.552 11 C -0.530 4.530 12 H 0.072 0.928 13 C 0.088 3.912 14 N -0.743 5.743 15 Si 0.915 3.085 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.262 1.262 19 N -0.362 5.362 20 C 0.392 3.608 21 C -0.171 4.171 22 C -0.054 4.054 23 C -0.202 4.202 24 C 0.136 3.864 25 N -0.514 5.514 26 N -0.319 5.319 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.181 0.819 37 H 0.403 0.597 38 H 0.274 0.726 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -10.741 8.485 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 C -0.195 4.195 4 C -0.191 4.191 5 C -0.045 4.045 6 C -0.333 4.333 7 C 0.150 3.850 8 N -0.304 5.304 9 C 0.354 3.646 10 O -0.434 6.434 11 C -0.566 4.566 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.370 5.370 15 Si 0.739 3.261 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.186 1.186 19 N -0.145 5.145 20 C 0.164 3.836 21 C -0.194 4.194 22 C -0.080 4.080 23 C -0.223 4.223 24 C -0.022 4.022 25 N -0.229 5.229 26 N -0.140 5.140 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.198 0.802 37 H 0.239 0.761 38 H 0.085 0.915 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.414 -10.341 8.881 14.052 hybrid contribution 0.654 -0.394 -1.280 1.491 sum 4.068 -10.734 7.601 13.768 Atomic orbital electron populations 1.21834 0.93321 1.01980 1.02246 1.18962 0.95500 0.94464 0.89755 1.21845 1.01227 0.94099 1.02327 1.21774 1.01170 1.00342 0.95773 1.22155 0.95087 0.91628 0.95620 1.21660 1.17435 1.04407 0.89820 1.18839 0.93847 0.86825 0.85457 1.44065 1.63012 1.21465 1.01859 1.17035 0.79654 0.79457 0.88465 1.90575 1.47851 1.38060 1.66936 1.19903 1.42836 1.02439 0.91385 0.91016 1.25749 0.92728 0.94686 1.00348 1.69989 1.26524 1.03546 1.36981 0.86231 0.79635 0.78243 0.81961 1.19392 1.20134 1.18647 1.45861 1.52294 1.10023 1.06359 1.17832 0.90951 0.85350 0.89494 1.21624 0.99728 0.96368 1.01700 1.21458 0.96092 0.94800 0.95628 1.22047 1.03130 1.02205 0.94884 1.22551 0.91685 0.87985 1.00002 1.66949 1.23009 1.18556 1.14361 1.77389 1.27159 1.17366 0.92095 0.91635 0.92774 0.92208 0.92371 0.92608 0.91252 0.92256 0.92636 0.92748 0.80196 0.76101 0.91465 0.83873 0.84368 0.84484 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.46 37.16 0.31 -1.61 16 2 C 0.02 0.24 0.96 -155.66 -0.15 0.09 16 3 C -0.14 -1.99 8.20 37.16 0.30 -1.69 16 4 C -0.13 -1.76 8.02 37.16 0.30 -1.46 16 5 C 0.12 2.39 5.64 -82.46 -0.47 1.93 16 6 C -0.30 -7.03 8.93 -39.68 -0.35 -7.39 16 7 C 0.37 8.82 7.57 -152.82 -1.16 7.66 16 8 N -0.66 -16.31 5.30 -13.93 -0.07 -16.39 16 9 C 0.54 15.46 7.52 -15.02 -0.11 15.35 16 10 O -0.55 -17.08 11.98 5.08 0.06 -17.01 16 11 C -0.53 -14.55 9.30 -37.63 -0.35 -14.90 16 12 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 13 C 0.09 2.35 5.50 -17.35 -0.10 2.25 16 14 N -0.74 -21.04 11.72 55.56 0.65 -20.39 16 15 Si 0.92 19.16 29.56 -169.99 -5.02 14.14 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 N -0.36 -7.62 3.79 -11.29 -0.04 -7.66 16 20 C 0.39 7.15 7.40 -154.44 -1.14 6.00 16 21 C -0.17 -2.49 9.74 -39.25 -0.38 -2.87 16 22 C -0.05 -0.58 10.17 -39.31 -0.40 -0.98 16 23 C -0.20 -2.06 10.11 -39.41 -0.40 -2.46 16 24 C 0.14 1.72 11.18 -17.56 -0.20 1.53 16 25 N -0.51 -8.91 8.18 -12.30 -0.10 -9.01 16 26 N -0.32 -6.37 11.39 33.63 0.38 -5.98 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.12 7.51 -51.93 -0.39 0.73 16 33 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.18 4.66 5.46 -52.49 -0.29 4.37 16 37 H 0.40 9.19 6.76 -40.82 -0.28 8.91 16 38 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 39 H 0.14 2.01 7.91 -52.49 -0.42 1.60 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -33.49 354.95 -8.64 -42.14 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.56 Total: 13.37 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -4.29 Total: 1.45 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.82 Total: -59.43 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.06 Total: -17.01 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.49 -8.64 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185301527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.337 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds