Wall clock time and date at job start Tue Mar 31 2020 11:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.39500 * 125.69362 * 74.71080 * 5 2 1 7 7 C 1.36671 * 107.86458 * 179.83382 * 6 5 2 8 8 N 1.38460 * 126.34525 * 180.14158 * 7 6 5 9 9 C 1.34784 * 119.99878 * 0.34106 * 8 7 6 10 10 O 1.21822 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.41474 * 120.00013 * 180.02562 * 9 8 7 12 12 H 1.08001 * 120.00064 * 359.97438 * 11 9 8 13 13 C 1.40167 * 120.00069 * 179.97438 * 11 9 8 14 14 N 1.30612 * 119.99956 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 120.00095 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46976 * 89.99810 * 15 13 11 17 17 H 1.48492 * 109.46804 * 209.99647 * 15 13 11 18 18 H 1.48496 * 109.47167 * 329.99891 * 15 13 11 19 19 N 1.36494 * 107.31205 * 0.42519 * 7 6 5 20 20 C 1.39712 * 126.14980 * 179.77064 * 19 7 6 21 21 C 1.38989 * 119.69083 * 154.98374 * 20 19 7 22 22 C 1.38394 * 119.10441 * 179.97438 * 21 20 19 23 23 C 1.38812 * 118.48935 * 0.02562 * 22 21 20 24 24 C 1.38129 * 119.29692 * 359.97438 * 23 22 21 25 25 N 1.31903 * 120.84491 * 359.74625 * 24 23 22 26 26 N 1.31031 * 125.68787 * 255.02590 * 5 2 1 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 36 36 H 1.07992 * 126.06842 * 0.02562 * 6 5 2 37 37 H 0.97000 * 120.00765 * 180.33522 * 8 7 6 38 38 H 0.97004 * 120.00249 * 179.97438 * 14 13 11 39 39 H 1.07999 * 120.44647 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.75638 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.35458 * 180.02562 * 23 22 21 42 42 H 1.07997 * 119.58174 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 2.0221 -0.1972 -2.5277 7 6 2.5632 -1.1401 -3.3559 8 7 2.7396 -1.0262 -4.7245 9 6 2.3674 0.1025 -5.3603 10 8 1.8753 1.0221 -4.7309 11 6 2.5471 0.2187 -6.7587 12 1 2.9830 -0.5968 -7.3168 13 6 2.1595 1.3922 -7.4201 14 7 1.6320 2.3782 -6.7453 15 14 2.3975 1.5459 -9.2665 16 1 1.1855 1.0476 -9.9650 17 1 2.6217 2.9707 -9.6197 18 1 3.5744 0.7417 -9.6826 19 7 2.8917 -2.2175 -2.5849 20 6 3.4692 -3.4074 -3.0347 21 6 4.2144 -4.1859 -2.1569 22 6 4.7806 -5.3626 -2.6153 23 6 4.5812 -5.7207 -3.9415 24 6 3.8289 -4.8987 -4.7578 25 7 3.2970 -3.7856 -4.2911 26 7 2.5465 -1.9151 -1.2613 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 1.6767 -0.2075 2.1392 36 1 1.6548 0.7741 -2.8243 37 1 3.1311 -1.7585 -5.2257 38 1 1.3641 3.1905 -7.2028 39 1 4.3491 -3.8770 -1.1308 40 1 5.3644 -5.9880 -1.9561 41 1 5.0088 -6.6328 -4.3307 42 1 3.6705 -5.1731 -5.7902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185301527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:52 Heat of formation + Delta-G solvation = 55.671271 kcal Electronic energy + Delta-G solvation = -26067.069610 eV Core-core repulsion = 22434.053775 eV Total energy + Delta-G solvation = -3633.015835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.69818 -40.93825 -39.72155 -37.80521 -35.42071 -34.58959 -33.99766 -33.41773 -30.61780 -30.13549 -28.66744 -28.11981 -27.73231 -25.03424 -24.81350 -23.39956 -22.71274 -21.09289 -20.19671 -19.16456 -18.74526 -17.62880 -17.52319 -17.04272 -16.58751 -16.36261 -16.03267 -15.60929 -15.40755 -15.17753 -15.07200 -14.79762 -14.51748 -14.26235 -14.18738 -13.94945 -13.32867 -13.11654 -13.01417 -12.89186 -12.84103 -12.78647 -12.55144 -12.19900 -12.05651 -12.00773 -11.98531 -11.55246 -11.40506 -11.11355 -10.97086 -10.92127 -10.66765 -9.90271 -9.28586 -8.88337 -8.45555 -7.10988 -0.25878 0.20473 0.97420 1.10362 1.38589 1.39849 1.56202 1.81839 2.18245 2.39243 2.64205 2.81490 3.28013 3.44254 3.55566 3.82016 3.90446 4.02053 4.08527 4.09509 4.27477 4.34198 4.44945 4.66948 4.74177 4.80359 4.81516 4.90869 4.98744 5.01491 5.03273 5.05763 5.13943 5.16642 5.20352 5.34606 5.37599 5.43921 5.49320 5.68295 5.76850 5.89920 6.01595 6.30584 6.51541 6.65376 6.92483 7.27293 8.25599 8.47142 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.005414 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.501424 B = 5170.131667 C = 7934.745736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.011 3.989 3 C -0.132 4.132 4 C -0.124 4.124 5 C 0.122 3.878 6 C -0.322 4.322 7 C 0.340 3.660 8 N -0.656 5.656 9 C 0.528 3.472 10 O -0.593 6.593 11 C -0.556 4.556 12 H 0.089 0.911 13 C 0.034 3.966 14 N -0.793 5.793 15 Si 1.006 2.994 16 H -0.258 1.258 17 H -0.267 1.267 18 H -0.248 1.248 19 N -0.361 5.361 20 C 0.337 3.663 21 C -0.174 4.174 22 C -0.043 4.043 23 C -0.171 4.171 24 C 0.119 3.881 25 N -0.551 5.551 26 N -0.308 5.308 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.409 0.591 38 H 0.283 0.717 39 H 0.142 0.858 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -13.573 8.541 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 C -0.190 4.190 4 C -0.181 4.181 5 C -0.045 4.045 6 C -0.355 4.355 7 C 0.120 3.880 8 N -0.303 5.303 9 C 0.338 3.662 10 O -0.478 6.478 11 C -0.591 4.591 12 H 0.107 0.893 13 C -0.185 4.185 14 N -0.420 5.420 15 Si 0.824 3.176 16 H -0.183 1.183 17 H -0.191 1.191 18 H -0.171 1.171 19 N -0.145 5.145 20 C 0.112 3.888 21 C -0.197 4.197 22 C -0.068 4.068 23 C -0.191 4.191 24 C -0.038 4.038 25 N -0.266 5.266 26 N -0.129 5.129 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.164 0.836 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.160 0.840 40 H 0.201 0.799 41 H 0.204 0.796 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.915 -13.258 8.970 16.745 hybrid contribution 0.267 0.272 -1.262 1.318 sum 5.182 -12.986 7.708 15.966 Atomic orbital electron populations 1.21816 0.92326 1.01941 1.02832 1.19231 0.96279 0.94620 0.88968 1.21819 1.00771 0.93737 1.02707 1.21715 1.00805 1.00117 0.95508 1.22708 0.94635 0.91376 0.95800 1.21474 1.18439 1.03550 0.92016 1.18929 0.95290 0.88503 0.85272 1.43616 1.63320 1.20810 1.02523 1.17470 0.79589 0.79888 0.89291 1.90551 1.49688 1.39698 1.67898 1.20402 1.43492 1.03814 0.91374 0.89331 1.27041 0.91411 0.93518 1.06538 1.70128 1.27369 1.04518 1.40001 0.84898 0.80223 0.78795 0.73712 1.18273 1.19114 1.17145 1.46015 1.52188 1.10466 1.05799 1.18220 0.93870 0.85650 0.91054 1.21785 0.99431 0.97301 1.01173 1.22004 0.94875 0.93348 0.96621 1.22604 1.00026 1.02459 0.94006 1.23226 0.91710 0.87086 1.01765 1.66821 1.24570 1.20747 1.14448 1.77275 1.26242 1.17163 0.92216 0.94102 0.93102 0.88514 0.88636 0.93288 0.94117 0.92697 0.93146 0.89355 0.83564 0.75330 0.90655 0.84009 0.79869 0.79611 0.79216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 8.46 71.98 0.61 -3.13 16 2 C 0.01 0.35 0.96 -52.93 -0.05 0.30 16 3 C -0.13 -3.95 8.20 71.98 0.59 -3.36 16 4 C -0.12 -3.09 8.02 71.98 0.58 -2.52 16 5 C 0.12 5.10 5.64 42.98 0.24 5.34 16 6 C -0.32 -16.50 8.93 22.21 0.20 -16.30 16 7 C 0.34 17.49 7.57 131.40 0.99 18.49 16 8 N -0.66 -34.93 5.30 -316.15 -1.68 -36.60 16 9 C 0.53 32.09 7.52 85.04 0.64 32.73 16 10 O -0.59 -39.81 11.98 -4.74 -0.06 -39.87 16 11 C -0.56 -31.76 9.30 23.54 0.22 -31.54 16 12 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 13 C 0.03 1.86 5.50 85.34 0.47 2.33 16 14 N -0.79 -46.94 11.72 21.86 0.26 -46.69 16 15 Si 1.01 39.52 29.56 68.60 2.03 41.55 16 16 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 17 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 19 N -0.36 -16.02 3.79 -189.63 -0.72 -16.74 16 20 C 0.34 12.54 7.40 132.81 0.98 13.53 16 21 C -0.17 -4.86 9.74 22.49 0.22 -4.64 16 22 C -0.04 -0.76 10.17 22.44 0.23 -0.53 16 23 C -0.17 -2.72 10.11 22.38 0.23 -2.50 16 24 C 0.12 2.78 11.18 84.66 0.95 3.72 16 25 N -0.55 -19.28 8.18 -192.83 -1.58 -20.85 16 26 N -0.31 -12.80 11.39 -47.52 -0.54 -13.34 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.43 7.51 -2.39 -0.02 1.41 16 33 H 0.05 1.42 8.07 -2.39 -0.02 1.40 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.15 8.50 5.46 -2.91 -0.02 8.48 16 37 H 0.41 19.87 6.76 -92.71 -0.63 19.24 16 38 H 0.28 14.97 8.29 -92.71 -0.77 14.20 16 39 H 0.14 3.88 7.91 -2.91 -0.02 3.86 16 40 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -82.21 354.95 5.22 -76.99 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: 0.42 Total: 43.64 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.09 Total: 11.92 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -4.26 Total: -134.23 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.06 Total: -39.87 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -82.21 5.22 -76.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185301527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.661 kcal (2) G-P(sol) polarization free energy of solvation -82.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds