Wall clock time and date at job start Tue Mar 31 2020 10:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36623 * 126.60342 * 2 1 4 4 C 1.47513 * 125.76810 * 359.97438 * 3 2 1 5 5 O 1.21606 * 119.99583 * 355.07673 * 4 3 2 6 6 N 1.34772 * 120.00278 * 175.06924 * 4 3 2 7 7 C 1.46502 * 119.99977 * 2.47522 * 6 4 3 8 8 C 1.46496 * 120.00172 * 182.47111 * 6 4 3 9 9 H 1.09005 * 109.47108 * 0.02562 * 8 6 4 10 10 C 1.53000 * 109.47314 * 240.00413 * 8 6 4 11 11 C 1.50699 * 109.47270 * 120.00050 * 8 6 4 12 12 H 1.08000 * 119.99897 * 0.02562 * 11 8 6 13 13 C 1.37877 * 120.00160 * 179.97438 * 11 8 6 14 14 N 1.31506 * 120.00049 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99713 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47263 * 60.00725 * 15 13 11 17 17 H 1.48508 * 109.46681 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47380 * 300.00032 * 15 13 11 19 19 N 1.34418 * 108.47020 * 179.97438 * 3 2 1 20 20 N 1.28760 * 109.57536 * 359.72692 * 19 3 2 21 21 N 1.35081 * 126.60480 * 179.97438 * 2 1 3 22 22 C 1.40224 * 126.61055 * 359.97438 * 21 2 1 23 23 C 1.38832 * 120.06324 * 145.00160 * 22 21 2 24 24 C 1.38120 * 119.93376 * 179.97438 * 23 22 21 25 25 C 1.38279 * 120.06576 * 0.02562 * 24 23 22 26 26 C 1.38272 * 120.13077 * 0.02562 * 25 24 23 27 27 C 1.38125 * 120.06772 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46948 * 270.02809 * 1 2 3 29 29 H 1.08995 * 109.46921 * 30.02287 * 1 2 3 30 30 H 1.08997 * 109.46917 * 150.02594 * 1 2 3 31 31 H 1.09006 * 109.47228 * 83.84149 * 7 6 4 32 32 H 1.08995 * 109.47103 * 203.83925 * 7 6 4 33 33 H 1.08997 * 109.47266 * 323.84085 * 7 6 4 34 34 H 1.08992 * 109.46998 * 299.99822 * 10 8 6 35 35 H 1.09003 * 109.47186 * 60.00239 * 10 8 6 36 36 H 1.09004 * 109.46694 * 179.97438 * 10 8 6 37 37 H 0.97007 * 120.00273 * 179.97438 * 14 13 11 38 38 H 1.08004 * 120.03409 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.96578 * 179.72143 * 24 23 22 40 40 H 1.07992 * 119.93224 * 179.97438 * 25 24 23 41 41 H 1.08007 * 119.96736 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03397 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3216 1.0968 0.0000 4 6 1.8749 2.5026 -0.0005 5 8 0.6908 2.7642 -0.0914 6 7 2.7790 3.4971 0.0998 7 6 4.2091 3.1841 0.1548 8 6 2.3317 4.8910 0.1539 9 1 1.2434 4.9257 0.1012 10 6 2.9247 5.6631 -1.0265 11 6 2.7918 5.5166 1.4454 12 1 3.3609 4.9342 2.1548 13 6 2.4871 6.8328 1.7208 14 7 1.7946 7.5421 0.8568 15 14 3.0581 7.6083 3.3215 16 1 4.5406 7.5607 3.3934 17 1 2.6045 9.0213 3.3763 18 1 2.4826 6.8594 4.4674 19 7 3.5991 0.6784 0.0006 20 7 3.6315 -0.6087 0.0067 21 7 2.3125 -1.0844 0.0005 22 6 1.9075 -2.4269 0.0016 23 6 2.6488 -3.3775 -0.6872 24 6 2.2478 -4.6992 -0.6838 25 6 1.1090 -5.0759 0.0041 26 6 0.3681 -4.1312 0.6901 27 6 0.7641 -2.8079 0.6905 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 4.5920 3.0550 -0.8575 32 1 4.7412 4.0005 0.6431 33 1 4.3582 2.2639 0.7198 34 1 4.0127 5.6284 -0.9734 35 1 2.5918 5.2107 -1.9606 36 1 2.5914 6.7002 -0.9864 37 1 1.5799 8.4680 1.0507 38 1 3.5386 -3.0839 -1.2243 39 1 2.8215 -5.4383 -1.2232 40 1 0.7972 -6.1098 0.0049 41 1 -0.5208 -4.4284 1.2269 42 1 0.1852 -2.0705 1.2268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264009286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:53 Heat of formation + Delta-G solvation = 104.536251 kcal Electronic energy + Delta-G solvation = -25694.976546 eV Core-core repulsion = 22064.079655 eV Total energy + Delta-G solvation = -3630.896891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41356 -39.63581 -38.64742 -35.45222 -34.86053 -32.78503 -32.52622 -31.34102 -30.17237 -29.20345 -27.68382 -25.96514 -25.17000 -24.15131 -23.73762 -22.66699 -21.22610 -20.46817 -19.01224 -17.85198 -16.83247 -16.46482 -16.31756 -15.73415 -15.48652 -15.13440 -14.72645 -14.40683 -14.17813 -14.03803 -13.99041 -13.44484 -13.12671 -13.00351 -12.92027 -12.44590 -12.26965 -12.02803 -11.99950 -11.86194 -11.53155 -11.41340 -11.04357 -10.98368 -10.81336 -10.63485 -10.40746 -10.19394 -10.12158 -9.50921 -9.22277 -9.17155 -9.07107 -8.81431 -8.38926 -7.51623 -6.03497 -4.11057 0.34121 0.83158 1.46689 1.92935 1.99456 3.21141 3.31869 3.36121 3.38604 3.83992 3.93314 4.22070 4.28292 4.40542 4.43399 4.61187 4.67133 4.79672 4.85638 4.91525 5.12920 5.18548 5.27644 5.41803 5.48649 5.61176 5.71442 5.82076 5.93602 5.96147 6.04771 6.22957 6.29461 6.35672 6.66388 6.72803 6.83847 6.92751 7.12146 7.47324 7.56548 7.75950 7.98720 8.08251 8.23284 8.55898 8.84341 9.04083 9.54929 11.01829 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.002940 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.861766 B = 9521.324210 C = 9664.745198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.119 3.881 3 C -0.081 4.081 4 C 0.586 3.414 5 O -0.550 6.550 6 N -0.571 5.571 7 C 0.080 3.920 8 C 0.258 3.742 9 H 0.065 0.935 10 C -0.146 4.146 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 N -0.190 5.190 20 N -0.074 5.074 21 N -0.323 5.323 22 C 0.138 3.862 23 C -0.101 4.101 24 C -0.103 4.103 25 C -0.115 4.115 26 C -0.100 4.100 27 C -0.121 4.121 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.011 0.989 36 H 0.094 0.906 37 H 0.264 0.736 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 -24.146 -2.807 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.015 4.015 3 C -0.219 4.219 4 C 0.371 3.629 5 O -0.429 6.429 6 N -0.300 5.300 7 C -0.064 4.064 8 C 0.158 3.842 9 H 0.083 0.917 10 C -0.205 4.205 11 C -0.564 4.564 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 N -0.063 5.063 20 N -0.051 5.051 21 N -0.103 5.103 22 C 0.046 3.954 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.141 4.141 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.956 -24.084 -2.885 24.275 hybrid contribution -0.367 0.594 0.900 1.139 sum -1.323 -23.490 -1.985 23.611 Atomic orbital electron populations 1.20864 0.84656 1.05668 1.04523 1.21990 0.96280 0.85586 0.97656 1.21669 0.88286 0.96356 1.15583 1.16740 0.85904 0.81983 0.78309 1.90701 1.16067 1.82993 1.53120 1.48105 1.06160 1.08073 1.67659 1.21940 0.81551 1.02011 1.00912 1.19017 0.97271 0.73428 0.94435 0.91712 1.22083 0.98946 1.03865 0.95569 1.21297 1.35676 0.96450 1.03003 0.92187 1.24874 0.94903 0.96914 0.96996 1.69870 1.38483 1.09215 1.35065 0.86548 0.79034 0.78141 0.83624 1.20198 1.21190 1.20265 1.74819 1.19134 1.02925 1.09411 1.82076 0.95112 1.04242 1.23710 1.47544 1.07170 1.04616 1.51016 1.17559 0.96920 0.80108 1.00771 1.21067 1.00158 0.92533 0.98366 1.21107 0.96835 0.95113 0.99063 1.21338 0.95000 1.00054 0.96931 1.21066 1.00094 0.91723 0.99012 1.21233 0.96131 0.97687 0.99069 0.89029 0.86350 0.90696 0.93893 0.90503 0.90314 0.95015 0.96947 0.88753 0.92646 0.84531 0.84744 0.85118 0.84635 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 8.12 36.01 0.29 -0.91 16 2 C 0.12 1.84 6.85 -81.75 -0.56 1.28 16 3 C -0.08 -1.52 6.70 -83.54 -0.56 -2.08 16 4 C 0.59 13.02 7.67 -12.48 -0.10 12.93 16 5 O -0.55 -13.14 14.03 5.27 0.07 -13.06 16 6 N -0.57 -13.20 2.75 -176.50 -0.49 -13.68 16 7 C 0.08 1.60 8.50 59.85 0.51 2.10 16 8 C 0.26 6.77 2.63 -69.09 -0.18 6.59 16 9 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 10 C -0.15 -3.61 8.97 37.16 0.33 -3.28 16 11 C -0.53 -14.50 7.95 -34.44 -0.27 -14.78 16 12 H 0.06 1.64 7.44 -52.49 -0.39 1.25 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 14 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 15 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 N -0.19 -3.47 8.80 32.85 0.29 -3.18 16 20 N -0.07 -1.23 13.57 60.35 0.82 -0.41 16 21 N -0.32 -4.65 3.75 -6.72 -0.03 -4.68 16 22 C 0.14 1.54 6.32 -83.58 -0.53 1.02 16 23 C -0.10 -0.96 9.79 -39.41 -0.39 -1.34 16 24 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 25 C -0.11 -0.67 10.04 -39.55 -0.40 -1.07 16 26 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 27 C -0.12 -1.07 8.36 -39.41 -0.33 -1.39 16 28 H 0.09 0.98 7.80 -51.93 -0.41 0.57 16 29 H 0.12 1.69 6.34 -51.93 -0.33 1.36 16 30 H 0.07 0.70 6.98 -51.93 -0.36 0.34 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 33 H 0.08 1.51 5.34 -51.93 -0.28 1.23 16 34 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.14 1.11 6.19 -52.48 -0.33 0.78 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -32.24 347.03 -6.76 -39.01 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.20 Total: 0.47 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.07 Total: -1.36 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 1.22 Total: -46.60 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.06 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.24 -6.76 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264009286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.543 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds