Wall clock time and date at job start Tue Mar 31 2020 10:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36623 * 126.60342 * 2 1 4 4 C 1.47513 * 125.76810 * 359.97438 * 3 2 1 5 5 O 1.21606 * 119.99583 * 355.07673 * 4 3 2 6 6 N 1.34772 * 120.00278 * 175.06924 * 4 3 2 7 7 C 1.46502 * 119.99977 * 2.47522 * 6 4 3 8 8 C 1.46496 * 120.00172 * 182.47111 * 6 4 3 9 9 H 1.09005 * 109.47108 * 0.02562 * 8 6 4 10 10 C 1.53000 * 109.47314 * 240.00413 * 8 6 4 11 11 C 1.50699 * 109.47270 * 120.00050 * 8 6 4 12 12 H 1.08000 * 119.99897 * 0.02562 * 11 8 6 13 13 C 1.37877 * 120.00160 * 179.97438 * 11 8 6 14 14 N 1.31506 * 120.00049 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99713 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47263 * 60.00725 * 15 13 11 17 17 H 1.48508 * 109.46681 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47380 * 300.00032 * 15 13 11 19 19 N 1.34418 * 108.47020 * 179.97438 * 3 2 1 20 20 N 1.28760 * 109.57536 * 359.72692 * 19 3 2 21 21 N 1.35081 * 126.60480 * 179.97438 * 2 1 3 22 22 C 1.40224 * 126.61055 * 359.97438 * 21 2 1 23 23 C 1.38832 * 120.06324 * 145.00160 * 22 21 2 24 24 C 1.38120 * 119.93376 * 179.97438 * 23 22 21 25 25 C 1.38279 * 120.06576 * 0.02562 * 24 23 22 26 26 C 1.38272 * 120.13077 * 0.02562 * 25 24 23 27 27 C 1.38125 * 120.06772 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46948 * 270.02809 * 1 2 3 29 29 H 1.08995 * 109.46921 * 30.02287 * 1 2 3 30 30 H 1.08997 * 109.46917 * 150.02594 * 1 2 3 31 31 H 1.09006 * 109.47228 * 83.84149 * 7 6 4 32 32 H 1.08995 * 109.47103 * 203.83925 * 7 6 4 33 33 H 1.08997 * 109.47266 * 323.84085 * 7 6 4 34 34 H 1.08992 * 109.46998 * 299.99822 * 10 8 6 35 35 H 1.09003 * 109.47186 * 60.00239 * 10 8 6 36 36 H 1.09004 * 109.46694 * 179.97438 * 10 8 6 37 37 H 0.97007 * 120.00273 * 179.97438 * 14 13 11 38 38 H 1.08004 * 120.03409 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.96578 * 179.72143 * 24 23 22 40 40 H 1.07992 * 119.93224 * 179.97438 * 25 24 23 41 41 H 1.08007 * 119.96736 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.03397 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3216 1.0968 0.0000 4 6 1.8749 2.5026 -0.0005 5 8 0.6908 2.7642 -0.0914 6 7 2.7790 3.4971 0.0998 7 6 4.2091 3.1841 0.1548 8 6 2.3317 4.8910 0.1539 9 1 1.2434 4.9257 0.1012 10 6 2.9247 5.6631 -1.0265 11 6 2.7918 5.5166 1.4454 12 1 3.3609 4.9342 2.1548 13 6 2.4871 6.8328 1.7208 14 7 1.7946 7.5421 0.8568 15 14 3.0581 7.6083 3.3215 16 1 4.5406 7.5607 3.3934 17 1 2.6045 9.0213 3.3763 18 1 2.4826 6.8594 4.4674 19 7 3.5991 0.6784 0.0006 20 7 3.6315 -0.6087 0.0067 21 7 2.3125 -1.0844 0.0005 22 6 1.9075 -2.4269 0.0016 23 6 2.6488 -3.3775 -0.6872 24 6 2.2478 -4.6992 -0.6838 25 6 1.1090 -5.0759 0.0041 26 6 0.3681 -4.1312 0.6901 27 6 0.7641 -2.8079 0.6905 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 4.5920 3.0550 -0.8575 32 1 4.7412 4.0005 0.6431 33 1 4.3582 2.2639 0.7198 34 1 4.0127 5.6284 -0.9734 35 1 2.5918 5.2107 -1.9606 36 1 2.5914 6.7002 -0.9864 37 1 1.5799 8.4680 1.0507 38 1 3.5386 -3.0839 -1.2243 39 1 2.8215 -5.4383 -1.2232 40 1 0.7972 -6.1098 0.0049 41 1 -0.5208 -4.4284 1.2269 42 1 0.1852 -2.0705 1.2268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264009286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:52 Heat of formation + Delta-G solvation = 85.299327 kcal Electronic energy + Delta-G solvation = -25695.810721 eV Core-core repulsion = 22064.079655 eV Total energy + Delta-G solvation = -3631.731067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.64422 -40.64183 -40.06439 -37.25949 -35.98871 -34.73389 -33.66089 -32.01121 -31.63704 -30.49257 -28.94297 -27.64578 -27.29481 -25.11583 -24.96594 -23.64652 -22.44859 -21.78548 -20.50479 -19.10733 -18.45647 -17.65360 -17.45337 -17.35126 -17.01926 -16.35064 -16.11054 -15.68671 -15.49026 -15.11148 -14.86981 -14.65626 -14.38198 -14.28048 -14.10064 -13.86624 -13.79375 -13.53048 -13.43656 -13.01390 -12.87925 -12.75140 -12.67155 -12.61766 -12.32770 -12.20430 -12.12078 -12.01479 -11.72615 -11.19320 -10.87246 -10.50481 -10.40819 -10.07656 -9.69531 -9.35358 -8.14091 -6.30278 -0.54699 0.26697 0.47699 0.58825 0.87039 1.42678 1.44640 1.52376 2.15701 2.27919 2.45550 2.63363 3.05442 3.13702 3.34198 3.52758 3.60258 3.81155 3.96747 4.16942 4.25038 4.34601 4.44379 4.47787 4.50553 4.58116 4.64473 4.74929 4.76806 4.91095 4.95335 5.03715 5.06023 5.15477 5.27255 5.29514 5.44533 5.46227 5.51464 5.58379 5.66421 5.90324 6.00694 6.15422 6.64349 6.73983 6.79682 7.21404 7.42377 8.90443 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.002940 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.861766 B = 9521.324210 C = 9664.745198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.113 4.113 4 C 0.583 3.417 5 O -0.577 6.577 6 N -0.583 5.583 7 C 0.088 3.912 8 C 0.264 3.736 9 H 0.022 0.978 10 C -0.132 4.132 11 C -0.542 4.542 12 H 0.057 0.943 13 C 0.020 3.980 14 N -0.914 5.914 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.276 1.276 19 N -0.206 5.206 20 N -0.085 5.085 21 N -0.306 5.306 22 C 0.093 3.907 23 C -0.113 4.113 24 C -0.101 4.101 25 C -0.100 4.100 26 C -0.096 4.096 27 C -0.124 4.124 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.266 0.734 38 H 0.127 0.873 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -27.425 -2.028 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.005 4.005 3 C -0.252 4.252 4 C 0.369 3.631 5 O -0.458 6.458 6 N -0.312 5.312 7 C -0.055 4.055 8 C 0.163 3.837 9 H 0.040 0.960 10 C -0.191 4.191 11 C -0.581 4.581 12 H 0.075 0.925 13 C -0.180 4.180 14 N -0.553 5.553 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.202 1.202 19 N -0.078 5.078 20 N -0.062 5.062 21 N -0.086 5.086 22 C 0.003 3.997 23 C -0.133 4.133 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.145 4.145 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.184 0.816 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.238 -27.414 -2.115 27.523 hybrid contribution -0.365 1.329 0.624 1.513 sum -1.603 -26.085 -1.491 26.176 Atomic orbital electron populations 1.20952 0.82416 1.06109 1.05761 1.22323 0.97453 0.85014 0.95690 1.21229 0.89477 0.95259 1.19196 1.17124 0.85441 0.83232 0.77306 1.90668 1.17093 1.83858 1.54154 1.48082 1.07548 1.07199 1.68362 1.21969 0.79757 1.02034 1.01766 1.18661 0.94825 0.75491 0.94751 0.96036 1.21889 0.99398 1.02382 0.95436 1.21507 1.36000 0.96962 1.03601 0.92494 1.25682 0.94815 0.97294 1.00252 1.69997 1.39086 1.09494 1.36709 0.85519 0.78993 0.77247 0.79315 1.19090 1.20514 1.20182 1.74722 1.19126 1.03753 1.10227 1.81960 0.96682 1.03500 1.24058 1.47663 1.06044 1.05795 1.49074 1.18023 0.99083 0.78640 1.03962 1.21176 0.99948 0.93608 0.98582 1.21454 0.97354 0.94205 0.98886 1.21823 0.93677 1.01644 0.94686 1.21478 1.00887 0.90549 0.98536 1.21426 0.95213 0.99113 0.98719 0.87218 0.88585 0.87383 0.92653 0.91143 0.89414 0.93892 0.96118 0.90782 0.92458 0.85541 0.82163 0.81632 0.81581 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 8.12 71.24 0.58 -1.66 16 2 C 0.13 4.07 6.85 41.68 0.29 4.36 16 3 C -0.11 -4.37 6.70 40.82 0.27 -4.10 16 4 C 0.58 27.00 7.67 86.69 0.67 27.67 16 5 O -0.58 -29.00 14.03 -4.05 -0.06 -29.06 16 6 N -0.58 -27.97 2.75 -830.58 -2.29 -30.26 16 7 C 0.09 3.59 8.50 127.77 1.09 4.67 16 8 C 0.26 14.42 2.63 44.25 0.12 14.54 16 9 H 0.02 1.36 6.90 -2.38 -0.02 1.34 16 10 C -0.13 -6.75 8.97 71.98 0.65 -6.10 16 11 C -0.54 -30.69 7.95 25.60 0.20 -30.49 16 12 H 0.06 3.18 7.44 -2.91 -0.02 3.16 16 13 C 0.02 1.09 5.30 84.66 0.45 1.54 16 14 N -0.91 -53.17 11.32 21.45 0.24 -52.93 16 15 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 N -0.21 -7.68 8.80 -49.98 -0.44 -8.12 16 20 N -0.08 -2.84 13.57 37.02 0.50 -2.34 16 21 N -0.31 -8.71 3.75 -175.17 -0.66 -9.36 16 22 C 0.09 1.94 6.32 38.08 0.24 2.18 16 23 C -0.11 -1.96 9.79 22.38 0.22 -1.74 16 24 C -0.10 -1.01 10.04 22.25 0.22 -0.79 16 25 C -0.10 -0.69 10.04 22.29 0.22 -0.47 16 26 C -0.10 -0.83 10.04 22.25 0.22 -0.60 16 27 C -0.12 -1.86 8.36 22.38 0.19 -1.67 16 28 H 0.11 2.21 7.80 -2.39 -0.02 2.19 16 29 H 0.10 2.80 6.34 -2.39 -0.02 2.79 16 30 H 0.11 1.80 6.98 -2.39 -0.02 1.78 16 31 H 0.05 2.08 8.14 -2.38 -0.02 2.07 16 32 H 0.07 2.92 7.12 -2.39 -0.02 2.90 16 33 H 0.09 3.44 5.34 -2.39 -0.01 3.43 16 34 H 0.04 2.03 7.67 -2.39 -0.02 2.01 16 35 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 37 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 38 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.17 0.07 8.06 -2.91 -0.02 0.04 16 41 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 42 H 0.14 1.92 6.19 -2.91 -0.02 1.90 16 Total: -1.00 -73.16 347.03 6.00 -67.16 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.05 Total: 11.52 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.62 Total: 7.34 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -2.64 Total: -103.00 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.06 Total: -29.06 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -73.16 6.00 -67.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264009286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.458 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds