Wall clock time and date at job start Tue Mar 31 2020 10:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30724 * 126.26987 * 2 1 4 4 N 1.28654 * 110.33488 * 180.02562 * 3 2 1 5 5 C 1.32179 * 109.57030 * 0.02562 * 4 3 2 6 6 C 1.41047 * 133.25951 * 179.97438 * 5 4 3 7 7 C 1.35638 * 119.40638 * 180.02562 * 6 5 4 8 8 C 1.41820 * 119.59479 * 359.97438 * 7 6 5 9 9 C 1.47607 * 119.97560 * 180.02562 * 8 7 6 10 10 O 1.21592 * 119.99504 * 152.86778 * 9 8 7 11 11 N 1.34775 * 120.00472 * 332.59325 * 9 8 7 12 12 C 1.46504 * 119.99684 * 357.21278 * 11 9 8 13 13 C 1.50697 * 109.47147 * 106.54520 * 12 11 9 14 14 H 1.07993 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99830 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99791 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99811 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47361 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47291 * 119.99889 * 17 15 13 20 20 H 1.48508 * 109.47079 * 239.99617 * 17 15 13 21 21 C 1.46492 * 120.00106 * 177.21114 * 11 9 8 22 22 C 1.53000 * 109.47347 * 94.87862 * 21 11 9 23 23 C 1.52999 * 117.49570 * 245.87958 * 22 21 11 24 24 C 1.52999 * 117.50154 * 177.21952 * 22 21 11 25 25 C 1.36494 * 120.04066 * 0.27716 * 8 7 6 26 26 N 1.35841 * 120.38385 * 359.44758 * 25 8 7 27 27 H 1.09002 * 109.46641 * 269.97321 * 1 2 3 28 28 H 1.08997 * 109.46996 * 29.97242 * 1 2 3 29 29 H 1.09001 * 109.47105 * 149.97369 * 1 2 3 30 30 H 1.07999 * 120.30055 * 0.05709 * 6 5 4 31 31 H 1.08002 * 120.20135 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.46676 * 226.54402 * 12 11 9 33 33 H 1.09000 * 109.46846 * 346.54054 * 12 11 9 34 34 H 0.96998 * 119.99830 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.47275 * 214.87542 * 21 11 9 36 36 H 1.09001 * 109.47449 * 334.87045 * 21 11 9 37 37 H 1.08994 * 115.55034 * 31.54169 * 22 21 11 38 38 H 1.09000 * 117.50254 * 359.97438 * 23 22 21 39 39 H 1.09002 * 117.50183 * 145.02168 * 23 22 21 40 40 H 1.08994 * 117.50085 * 214.97945 * 24 22 21 41 41 H 1.09007 * 117.49472 * 359.97438 * 24 22 21 42 42 H 1.07997 * 119.80318 * 179.70401 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7007 -0.0005 5 6 3.6013 -0.6184 -0.0015 6 6 4.6877 -1.5179 -0.0028 7 6 4.4471 -2.8528 -0.0041 8 6 3.1092 -3.3233 -0.0035 9 6 2.8378 -4.7742 -0.0042 10 8 1.8051 -5.1997 0.4764 11 7 3.7319 -5.6269 -0.5427 12 6 4.9445 -5.1096 -1.1816 13 6 6.1327 -5.3753 -0.2935 14 1 5.9980 -5.8786 0.6523 15 6 7.3916 -4.9747 -0.6882 16 7 7.5555 -4.3612 -1.8399 17 14 8.8645 -5.3046 0.4122 18 1 8.4160 -6.0040 1.6431 19 1 9.8430 -6.1549 -0.3121 20 1 9.5054 -4.0167 0.7809 21 6 3.4912 -7.0709 -0.4890 22 6 2.8210 -7.5249 -1.7873 23 6 1.3876 -8.0520 -1.6954 24 6 2.5444 -9.0204 -1.9541 25 6 2.0726 -2.4354 -0.0073 26 7 2.3131 -1.0984 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 5.7021 -1.1472 -0.0023 31 1 5.2694 -3.5531 -0.0055 32 1 5.0897 -5.6062 -2.1410 33 1 4.8420 -4.0360 -1.3400 34 1 8.4412 -4.0797 -2.1177 35 1 4.4403 -7.5932 -0.3682 36 1 2.8407 -7.2998 0.3551 37 1 3.0936 -6.9610 -2.6792 38 1 0.9222 -8.0757 -0.7101 39 1 0.7173 -7.8352 -2.5272 40 1 2.6349 -9.4403 -2.9559 41 1 2.8404 -9.6810 -1.1390 42 1 1.0553 -2.7979 -0.0117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264125818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:09 Heat of formation + Delta-G solvation = 115.694072 kcal Electronic energy + Delta-G solvation = -26194.353156 eV Core-core repulsion = 22563.940104 eV Total energy + Delta-G solvation = -3630.413051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.35181 -39.93506 -37.67028 -36.83473 -35.37733 -34.00359 -32.79095 -31.75897 -30.52776 -28.22043 -27.29143 -26.79805 -24.17895 -23.46020 -22.87704 -22.16606 -21.41031 -20.65038 -19.21769 -18.12113 -16.97317 -16.85858 -16.47925 -16.07217 -16.02416 -15.10088 -14.66402 -14.62284 -14.50519 -14.18785 -13.73493 -13.61504 -13.25193 -12.98315 -12.71645 -12.63018 -12.20300 -12.17249 -11.83774 -11.64006 -11.46359 -11.34536 -11.12324 -11.08050 -10.92321 -10.52165 -10.38263 -10.25568 -10.15114 -9.90034 -9.70910 -9.52001 -9.20674 -8.79419 -8.03286 -7.76512 -6.44909 -4.56413 0.69178 1.23566 2.34690 2.66730 3.09109 3.18805 3.20501 3.23129 3.51249 3.80231 4.04339 4.12628 4.24894 4.50140 4.70920 4.77308 4.84576 4.98069 5.00182 5.02616 5.15438 5.22824 5.30444 5.39036 5.57499 5.64342 5.70832 5.77606 5.96738 6.00100 6.05286 6.14811 6.19230 6.27987 6.33381 6.43805 6.49651 6.58094 6.81019 6.95358 7.02072 7.21277 7.48539 7.71135 8.03760 8.47768 8.64967 8.70608 9.13355 10.59661 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.005578 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.446391 B = 5018.123186 C = 7483.149782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.128 3.872 3 N -0.253 5.253 4 N -0.304 5.304 5 C 0.213 3.787 6 C -0.106 4.106 7 C -0.071 4.071 8 C -0.131 4.131 9 C 0.565 3.435 10 O -0.562 6.562 11 N -0.577 5.577 12 C 0.209 3.791 13 C -0.552 4.552 14 H 0.069 0.931 15 C 0.072 3.928 16 N -0.876 5.876 17 Si 0.897 3.103 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.278 1.278 21 C 0.151 3.849 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.178 4.178 25 C 0.111 3.889 26 N -0.393 5.393 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.159 0.841 31 H 0.216 0.784 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.271 0.729 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 -1.830 0.669 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.134 4.134 3 N -0.093 5.093 4 N -0.149 5.149 5 C -0.035 4.035 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.137 4.137 9 C 0.352 3.648 10 O -0.443 6.443 11 N -0.305 5.305 12 C 0.090 3.910 13 C -0.590 4.590 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.512 5.512 17 Si 0.724 3.276 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.204 1.204 21 C 0.028 3.972 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.216 4.216 25 C -0.014 4.014 26 N -0.073 5.073 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.177 0.823 31 H 0.232 0.768 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.878 -0.317 0.772 9.913 hybrid contribution 0.644 -1.435 0.275 1.596 sum -9.234 -1.752 1.047 9.456 Atomic orbital electron populations 1.20157 0.83353 1.04450 1.03925 1.24800 0.96784 0.80992 1.10820 1.74081 0.96872 1.23615 1.14753 1.74868 1.10458 1.06316 1.23270 1.22665 0.85020 0.92543 1.03314 1.20272 0.96919 0.90821 1.04720 1.23272 0.98392 0.97145 0.90542 1.19719 0.93577 0.94462 1.05989 1.17677 0.83433 0.84913 0.78805 1.90719 1.26377 1.78629 1.48575 1.47990 1.22045 1.05663 1.54773 1.20293 0.80133 0.96748 0.93856 1.21440 0.91417 1.40346 1.05756 0.91267 1.25009 0.99091 0.94208 0.95155 1.69927 1.24155 1.37203 1.19882 0.86434 0.82028 0.78545 0.80618 1.19378 1.20593 1.20391 1.20921 1.00669 0.80533 0.95104 1.22730 0.98400 0.96226 1.00599 1.22987 0.91413 1.04179 1.02782 1.22905 1.03597 0.92544 1.02535 1.21522 1.01386 0.79477 0.99026 1.43563 1.09120 1.06633 1.48002 0.89762 0.88646 0.90458 0.82332 0.76833 0.94431 0.91981 0.91932 0.89263 0.90453 0.87758 0.88695 0.89519 0.89103 0.88853 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.40 36.01 0.37 -0.21 16 2 C 0.13 1.96 8.14 -154.12 -1.25 0.71 16 3 N -0.25 -4.62 12.18 32.97 0.40 -4.22 16 4 N -0.30 -6.00 12.29 31.19 0.38 -5.62 16 5 C 0.21 3.95 7.92 -155.95 -1.23 2.72 16 6 C -0.11 -1.89 10.09 -39.45 -0.40 -2.29 16 7 C -0.07 -1.30 7.41 -39.14 -0.29 -1.59 16 8 C -0.13 -2.30 5.47 -105.34 -0.58 -2.87 16 9 C 0.56 10.55 7.46 -12.44 -0.09 10.46 16 10 O -0.56 -11.07 16.12 5.29 0.09 -10.98 16 11 N -0.58 -10.75 2.51 -176.26 -0.44 -11.19 16 12 C 0.21 4.33 4.69 -5.19 -0.02 4.31 16 13 C -0.55 -12.36 7.04 -34.44 -0.24 -12.61 16 14 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.07 1.66 5.41 -17.82 -0.10 1.56 16 16 N -0.88 -21.40 13.29 55.43 0.74 -20.67 16 17 Si 0.90 18.46 29.54 -169.99 -5.02 13.44 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 C 0.15 2.50 5.66 -4.05 -0.02 2.48 16 22 C -0.16 -2.37 6.01 -90.62 -0.54 -2.92 16 23 C -0.18 -2.30 10.18 -26.69 -0.27 -2.58 16 24 C -0.18 -2.17 10.25 -26.69 -0.27 -2.44 16 25 C 0.11 1.74 10.43 -16.41 -0.17 1.57 16 26 N -0.39 -6.51 2.94 -59.37 -0.17 -6.69 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 31 H 0.22 4.35 3.39 -52.49 -0.18 4.17 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.33 4.09 -51.93 -0.21 1.12 16 34 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 35 H 0.09 1.49 7.84 -51.93 -0.41 1.09 16 36 H 0.08 1.28 7.06 -51.93 -0.37 0.91 16 37 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.18 2.28 7.80 -52.49 -0.41 1.87 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -27.34 354.29 -9.15 -36.49 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.34 Total: 7.79 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -5.12 Total: -3.69 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.90 Total: -48.38 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.34 -9.15 -36.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264125818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.185 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds