Wall clock time and date at job start Tue Mar 31 2020 10:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30724 * 126.26987 * 2 1 4 4 N 1.28654 * 110.33488 * 180.02562 * 3 2 1 5 5 C 1.32179 * 109.57030 * 0.02562 * 4 3 2 6 6 C 1.41047 * 133.25951 * 179.97438 * 5 4 3 7 7 C 1.35638 * 119.40638 * 180.02562 * 6 5 4 8 8 C 1.41820 * 119.59479 * 359.97438 * 7 6 5 9 9 C 1.47607 * 119.97560 * 180.02562 * 8 7 6 10 10 O 1.21592 * 119.99504 * 152.86778 * 9 8 7 11 11 N 1.34775 * 120.00472 * 332.59325 * 9 8 7 12 12 C 1.46504 * 119.99684 * 357.21278 * 11 9 8 13 13 C 1.50697 * 109.47147 * 106.54520 * 12 11 9 14 14 H 1.07993 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99830 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99791 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99811 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47361 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47291 * 119.99889 * 17 15 13 20 20 H 1.48508 * 109.47079 * 239.99617 * 17 15 13 21 21 C 1.46492 * 120.00106 * 177.21114 * 11 9 8 22 22 C 1.53000 * 109.47347 * 94.87862 * 21 11 9 23 23 C 1.52999 * 117.49570 * 245.87958 * 22 21 11 24 24 C 1.52999 * 117.50154 * 177.21952 * 22 21 11 25 25 C 1.36494 * 120.04066 * 0.27716 * 8 7 6 26 26 N 1.35841 * 120.38385 * 359.44758 * 25 8 7 27 27 H 1.09002 * 109.46641 * 269.97321 * 1 2 3 28 28 H 1.08997 * 109.46996 * 29.97242 * 1 2 3 29 29 H 1.09001 * 109.47105 * 149.97369 * 1 2 3 30 30 H 1.07999 * 120.30055 * 0.05709 * 6 5 4 31 31 H 1.08002 * 120.20135 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.46676 * 226.54402 * 12 11 9 33 33 H 1.09000 * 109.46846 * 346.54054 * 12 11 9 34 34 H 0.96998 * 119.99830 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.47275 * 214.87542 * 21 11 9 36 36 H 1.09001 * 109.47449 * 334.87045 * 21 11 9 37 37 H 1.08994 * 115.55034 * 31.54169 * 22 21 11 38 38 H 1.09000 * 117.50254 * 359.97438 * 23 22 21 39 39 H 1.09002 * 117.50183 * 145.02168 * 23 22 21 40 40 H 1.08994 * 117.50085 * 214.97945 * 24 22 21 41 41 H 1.09007 * 117.49472 * 359.97438 * 24 22 21 42 42 H 1.07997 * 119.80318 * 179.70401 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7007 -0.0005 5 6 3.6013 -0.6184 -0.0015 6 6 4.6877 -1.5179 -0.0028 7 6 4.4471 -2.8528 -0.0041 8 6 3.1092 -3.3233 -0.0035 9 6 2.8378 -4.7742 -0.0042 10 8 1.8051 -5.1997 0.4764 11 7 3.7319 -5.6269 -0.5427 12 6 4.9445 -5.1096 -1.1816 13 6 6.1327 -5.3753 -0.2935 14 1 5.9980 -5.8786 0.6523 15 6 7.3916 -4.9747 -0.6882 16 7 7.5555 -4.3612 -1.8399 17 14 8.8645 -5.3046 0.4122 18 1 8.4160 -6.0040 1.6431 19 1 9.8430 -6.1549 -0.3121 20 1 9.5054 -4.0167 0.7809 21 6 3.4912 -7.0709 -0.4890 22 6 2.8210 -7.5249 -1.7873 23 6 1.3876 -8.0520 -1.6954 24 6 2.5444 -9.0204 -1.9541 25 6 2.0726 -2.4354 -0.0073 26 7 2.3131 -1.0984 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 5.7021 -1.1472 -0.0023 31 1 5.2694 -3.5531 -0.0055 32 1 5.0897 -5.6062 -2.1410 33 1 4.8420 -4.0360 -1.3400 34 1 8.4412 -4.0797 -2.1177 35 1 4.4403 -7.5932 -0.3682 36 1 2.8407 -7.2998 0.3551 37 1 3.0936 -6.9610 -2.6792 38 1 0.9222 -8.0757 -0.7101 39 1 0.7173 -7.8352 -2.5272 40 1 2.6349 -9.4403 -2.9559 41 1 2.8404 -9.6810 -1.1390 42 1 1.0553 -2.7979 -0.0117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264125818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:08 Heat of formation + Delta-G solvation = 104.004838 kcal Electronic energy + Delta-G solvation = -26194.860039 eV Core-core repulsion = 22563.940104 eV Total energy + Delta-G solvation = -3630.919935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.69077 -41.38064 -38.96853 -38.10859 -36.85976 -35.32990 -34.50285 -33.01111 -31.77017 -29.79998 -28.50326 -28.18789 -25.56603 -25.03624 -24.35927 -23.16474 -22.67337 -21.87125 -20.61389 -19.51778 -18.59268 -18.31661 -17.82217 -17.53609 -17.39702 -16.53193 -16.11802 -15.99600 -15.82973 -15.39885 -15.09359 -14.82590 -14.45830 -14.33298 -14.07942 -13.57874 -13.53494 -13.46625 -13.26554 -13.06184 -12.88099 -12.76369 -12.53180 -12.32359 -12.29558 -12.18505 -11.77695 -11.69985 -11.55663 -11.32938 -11.01031 -10.80066 -10.71081 -10.47219 -9.55462 -9.12282 -8.23972 -6.39693 -0.63632 -0.14562 1.05623 1.34365 1.43584 1.50190 1.57705 1.78168 2.11149 2.35147 2.45126 2.92911 3.00204 3.07967 3.31730 3.37899 3.55333 3.69403 3.71669 3.87552 4.05435 4.14627 4.25801 4.36486 4.43654 4.63606 4.70156 4.76189 4.80985 4.84588 4.86769 4.87997 4.96702 5.05171 5.06051 5.10488 5.23696 5.30231 5.31238 5.38510 5.62473 5.70717 5.73881 5.96867 6.48001 6.75129 7.11011 7.33503 7.35647 8.80240 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.005578 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.446391 B = 5018.123186 C = 7483.149782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.152 3.848 3 N -0.287 5.287 4 N -0.334 5.334 5 C 0.199 3.801 6 C -0.112 4.112 7 C -0.072 4.072 8 C -0.153 4.153 9 C 0.567 3.433 10 O -0.572 6.572 11 N -0.579 5.579 12 C 0.224 3.776 13 C -0.549 4.549 14 H 0.063 0.937 15 C 0.036 3.964 16 N -0.905 5.905 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.279 1.279 21 C 0.151 3.849 22 C -0.183 4.183 23 C -0.169 4.169 24 C -0.159 4.159 25 C 0.139 3.861 26 N -0.399 5.399 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.196 0.804 32 H 0.017 0.983 33 H 0.059 0.941 34 H 0.271 0.729 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 -2.463 1.036 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.125 5.125 4 N -0.178 5.178 5 C -0.051 4.051 6 C -0.133 4.133 7 C -0.095 4.095 8 C -0.160 4.160 9 C 0.355 3.645 10 O -0.454 6.454 11 N -0.307 5.307 12 C 0.104 3.896 13 C -0.587 4.587 14 H 0.082 0.918 15 C -0.167 4.167 16 N -0.542 5.542 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.205 1.205 21 C 0.029 3.971 22 C -0.203 4.203 23 C -0.206 4.206 24 C -0.196 4.196 25 C 0.014 3.986 26 N -0.080 5.080 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.179 0.821 31 H 0.212 0.788 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.029 -0.941 1.147 12.120 hybrid contribution 1.183 -1.197 0.173 1.691 sum -10.847 -2.137 1.320 11.134 Atomic orbital electron populations 1.20547 0.79065 1.06505 1.05988 1.25937 0.98701 0.79706 1.06777 1.74037 0.96728 1.24966 1.16765 1.74791 1.11668 1.07036 1.24259 1.22687 0.86018 0.92438 1.03910 1.20251 0.97247 0.90659 1.05130 1.22962 0.98442 0.96867 0.91219 1.19617 0.93731 0.94281 1.08366 1.17751 0.83155 0.85251 0.78366 1.90701 1.26644 1.78941 1.49125 1.47972 1.21443 1.06647 1.54637 1.19964 0.80618 0.96299 0.92738 1.21552 0.92059 1.39568 1.05503 0.91838 1.25555 1.01038 0.94154 0.95970 1.70003 1.24514 1.38513 1.21219 0.85632 0.79535 0.78136 0.79235 1.19181 1.20727 1.20453 1.20982 1.00525 0.79353 0.96276 1.22577 1.00247 0.98435 0.98993 1.23020 0.90742 1.03716 1.03135 1.23019 1.01816 0.90947 1.03823 1.21879 1.02193 0.78704 0.95781 1.43765 1.08717 1.07235 1.48278 0.87483 0.86993 0.88000 0.82089 0.78770 0.96479 0.92355 0.91993 0.90014 0.90378 0.89219 0.88896 0.88416 0.87601 0.87750 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.40 71.24 0.74 -0.21 16 2 C 0.15 4.28 8.14 137.68 1.12 5.40 16 3 N -0.29 -10.18 12.18 -49.61 -0.60 -10.78 16 4 N -0.33 -13.19 12.29 -55.23 -0.68 -13.87 16 5 C 0.20 7.37 7.92 134.12 1.06 8.43 16 6 C -0.11 -4.06 10.09 22.36 0.23 -3.84 16 7 C -0.07 -2.67 7.41 22.55 0.17 -2.51 16 8 C -0.15 -5.29 5.47 -20.33 -0.11 -5.40 16 9 C 0.57 20.84 7.46 86.72 0.65 21.49 16 10 O -0.57 -21.68 16.12 -4.00 -0.06 -21.75 16 11 N -0.58 -21.76 2.51 -829.83 -2.08 -23.84 16 12 C 0.22 9.55 4.69 85.63 0.40 9.95 16 13 C -0.55 -25.07 7.04 25.60 0.18 -24.89 16 14 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 15 C 0.04 1.69 5.41 84.66 0.46 2.15 16 16 N -0.91 -45.21 13.29 21.45 0.28 -44.93 16 17 Si 0.95 38.20 29.54 68.60 2.03 40.23 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 20 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 21 C 0.15 5.00 5.66 86.38 0.49 5.49 16 22 C -0.18 -5.30 6.01 -10.79 -0.06 -5.36 16 23 C -0.17 -4.10 10.18 30.62 0.31 -3.78 16 24 C -0.16 -3.54 10.25 30.62 0.31 -3.22 16 25 C 0.14 4.05 10.43 83.66 0.87 4.93 16 26 N -0.40 -12.54 2.94 -341.74 -1.00 -13.54 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.16 5.58 8.06 -2.91 -0.02 5.56 16 31 H 0.20 8.16 3.39 -2.91 -0.01 8.15 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 2.58 4.09 -2.39 -0.01 2.57 16 34 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 35 H 0.08 2.77 7.84 -2.38 -0.02 2.75 16 36 H 0.08 2.55 7.06 -2.39 -0.02 2.53 16 37 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.09 2.30 8.04 -2.39 -0.02 2.28 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.21 4.61 7.80 -2.91 -0.02 4.58 16 Total: -1.00 -59.48 354.29 5.74 -53.73 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 1.05 Total: 26.12 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.81 Total: 8.62 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.08 Total: -106.95 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -59.48 5.74 -53.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264125818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.737 kcal (2) G-P(sol) polarization free energy of solvation -59.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds